Wall clock time and date at job start Mon Mar 30 2020 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47405 * 89.99961 * 3 2 1 5 5 H 1.48505 * 109.47516 * 210.00310 * 3 2 1 6 6 H 1.48506 * 109.47403 * 329.99918 * 3 2 1 7 7 C 1.37873 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00339 * 186.16210 * 7 2 1 9 9 C 1.50708 * 120.00069 * 6.15436 * 7 2 1 10 10 H 1.08998 * 109.51728 * 35.03822 * 9 7 2 11 11 C 1.53124 * 109.52257 * 274.85416 * 9 7 2 12 12 C 1.53031 * 109.27506 * 297.74232 * 11 9 7 13 13 N 1.46854 * 109.52765 * 300.82600 * 12 11 9 14 14 C 1.46840 * 111.19624 * 61.74111 * 13 12 11 15 15 H 1.09000 * 109.45880 * 58.26969 * 14 13 12 16 16 C 1.53001 * 109.46135 * 178.24783 * 14 13 12 17 17 C 1.52580 * 109.22880 * 61.28580 * 16 14 13 18 18 C 1.53099 * 109.95462 * 169.00611 * 17 16 14 19 19 S 1.81739 * 108.84148 * 63.02753 * 18 17 16 20 20 O 1.42101 * 109.47217 * 190.73905 * 19 18 17 21 21 C 1.81747 * 102.22143 * 306.73217 * 19 18 17 22 22 C 1.52592 * 109.22208 * 300.05002 * 16 14 13 23 23 C 1.53039 * 109.52625 * 298.26043 * 14 13 12 24 24 H 0.97008 * 119.99922 * 175.07657 * 1 2 3 25 25 H 1.08998 * 109.50487 * 57.68346 * 11 9 7 26 26 H 1.08997 * 109.49805 * 177.80734 * 11 9 7 27 27 H 1.08999 * 109.46420 * 180.80739 * 12 11 9 28 28 H 1.09008 * 109.45705 * 60.83738 * 12 11 9 29 29 H 1.00897 * 111.00248 * 185.83995 * 13 12 11 30 30 H 1.09005 * 109.22358 * 180.65234 * 16 14 13 31 31 H 1.09000 * 109.39128 * 289.15458 * 17 16 14 32 32 H 1.09002 * 109.38604 * 48.85685 * 17 16 14 33 33 H 1.09000 * 109.57426 * 303.21640 * 18 17 16 34 34 H 1.09003 * 109.57303 * 182.83691 * 18 17 16 35 35 H 1.08997 * 109.57619 * 293.45543 * 21 19 18 36 36 H 1.09004 * 109.57410 * 173.07448 * 21 19 18 37 37 H 1.08992 * 109.39119 * 311.14530 * 22 16 14 38 38 H 1.08998 * 109.38906 * 70.85062 * 22 16 14 39 39 H 1.09000 * 109.49927 * 299.24244 * 23 14 13 40 40 H 1.08999 * 109.53936 * 179.14464 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0999 9 6 1.2577 -2.4954 -0.1410 10 1 0.4055 -2.3562 -0.8063 11 6 0.7651 -2.9537 1.2344 12 6 1.9695 -3.2048 2.1445 13 7 2.8313 -4.2322 1.5458 14 6 3.3544 -3.7946 0.2454 15 1 3.9130 -2.8672 0.3721 16 6 4.2795 -4.8735 -0.3212 17 6 3.4848 -6.1599 -0.5259 18 6 4.3107 -7.1604 -1.3388 19 16 5.7994 -7.5983 -0.3929 20 8 6.6932 -8.3244 -1.2256 21 6 6.5102 -5.9682 -0.0177 22 6 5.4368 -5.1019 0.6466 23 6 2.1913 -3.5611 -0.7215 24 1 -0.4850 -0.8370 -0.0721 25 1 0.1339 -2.1800 1.6714 26 1 0.1918 -3.8745 1.1273 27 1 1.6228 -3.5451 3.1202 28 1 2.5347 -2.2802 2.2621 29 1 3.5819 -4.4839 2.1713 30 1 4.6745 -4.5398 -1.2808 31 1 3.2429 -6.5941 0.4442 32 1 2.5619 -5.9340 -1.0599 33 1 4.6004 -6.7091 -2.2877 34 1 3.7190 -8.0569 -1.5243 35 1 6.8429 -5.4937 -0.9408 36 1 7.3557 -6.0857 0.6601 37 1 5.8693 -4.1414 0.9267 38 1 5.0675 -5.6051 1.5401 39 1 1.6404 -4.4915 -0.8593 40 1 2.5784 -3.2217 -1.6822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:27 Heat of formation + Delta-G solvation = -85.463627 kcal Electronic energy + Delta-G solvation = -19931.191889 eV Core-core repulsion = 17063.079048 eV Total energy + Delta-G solvation = -2868.112841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46974 -37.55484 -36.71763 -34.89492 -32.62470 -31.96625 -31.66608 -27.52597 -26.58816 -24.38500 -23.90687 -23.11048 -21.24605 -20.30654 -18.39136 -18.07306 -17.30741 -16.56990 -16.12791 -15.99131 -15.63898 -15.45144 -15.29294 -14.87949 -14.84816 -14.25979 -14.19668 -13.66806 -13.47420 -13.44699 -12.90604 -12.76584 -12.66063 -12.50304 -12.27746 -12.17897 -12.00225 -11.83787 -11.61640 -11.53901 -11.08708 -10.70641 -10.66230 -10.45938 -10.22996 -9.20055 -9.10929 -8.52989 -6.21926 0.71440 1.49650 1.57802 1.67224 1.73766 2.57080 2.84422 3.26241 3.44404 3.72955 3.83676 3.90960 4.15104 4.27237 4.33670 4.43613 4.51454 4.52974 4.59514 4.66593 4.77944 4.85921 4.89556 4.99704 5.07881 5.11198 5.17979 5.21442 5.25825 5.31792 5.42704 5.47592 5.57157 5.60560 5.72342 6.19785 6.26585 6.34042 6.74506 6.85516 7.56314 8.86038 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.032418 B = 0.004736 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.497872 B = 5911.026003 C = 6169.565252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.034 4.034 3 Si 1.106 2.894 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.582 4.582 8 H 0.043 0.957 9 C 0.016 3.984 10 H -0.013 1.013 11 C -0.096 4.096 12 C 0.081 3.919 13 N -0.664 5.664 14 C 0.114 3.886 15 H 0.018 0.982 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.434 4.434 19 S 1.292 4.708 20 O -0.934 6.934 21 C -0.431 4.431 22 C -0.090 4.090 23 C -0.091 4.091 24 H 0.258 0.742 25 H 0.021 0.979 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.013 0.987 29 H 0.350 0.650 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 -14.232 6.134 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.232 4.232 3 Si 0.930 3.070 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.620 4.620 8 H 0.061 0.939 9 C -0.003 4.003 10 H 0.006 0.994 11 C -0.135 4.135 12 C -0.049 4.049 13 N -0.297 5.297 14 C 0.004 3.996 15 H 0.036 0.964 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.573 4.573 19 S 1.493 4.507 20 O -0.929 6.929 21 C -0.570 4.570 22 C -0.129 4.129 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.031 0.969 29 H 0.171 0.829 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.046 -13.869 6.146 17.662 hybrid contribution 0.925 0.847 -2.369 2.680 sum 9.971 -13.022 3.777 16.831 Atomic orbital electron populations 1.70869 1.07828 1.30426 1.49185 1.26972 0.96628 1.05931 0.93675 0.83052 0.74154 0.72315 0.77469 1.20111 1.20175 1.21465 1.22220 0.94225 0.92813 1.52726 0.93860 1.18957 0.94124 0.94203 0.92989 0.99432 1.21462 0.96922 0.97336 0.97752 1.21585 0.94056 0.92665 0.96574 1.60340 1.24142 1.40950 1.04297 1.21178 0.93606 0.94631 0.90228 0.96365 1.21290 0.95423 0.95977 0.98576 1.21166 0.97090 0.91891 1.01752 1.27612 1.14514 1.06892 1.08244 1.69563 0.87060 0.85252 1.08827 1.92953 1.63933 1.63000 1.73050 1.27538 1.07529 1.15723 1.06188 1.21243 0.92500 1.00123 0.98998 1.21529 0.96924 0.97643 0.96789 0.93160 0.96018 0.93584 0.90213 0.96916 0.82943 0.93236 0.86682 0.91843 0.91927 0.85393 0.91768 0.84840 0.91520 0.86348 0.91825 0.95100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.63 21.45 0.29 -56.85 16 2 C -0.03 -1.93 5.45 84.65 0.46 -1.47 16 3 Si 1.11 50.12 29.91 68.60 2.05 52.17 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.58 -31.04 6.86 25.60 0.18 -30.86 16 8 H 0.04 2.30 6.24 -2.91 -0.02 2.28 16 9 C 0.02 0.77 2.22 -11.46 -0.03 0.75 16 10 H -0.01 -0.69 6.97 -2.39 -0.02 -0.71 16 11 C -0.10 -4.12 5.49 30.65 0.17 -3.95 16 12 C 0.08 2.80 6.34 86.32 0.55 3.35 16 13 N -0.66 -18.05 5.97 -491.68 -2.93 -20.99 16 14 C 0.11 3.56 2.00 44.94 0.09 3.65 16 15 H 0.02 0.69 6.44 -2.39 -0.02 0.68 16 16 C -0.09 -2.17 1.81 -11.07 -0.02 -2.19 16 17 C -0.08 -1.57 4.64 30.49 0.14 -1.43 16 18 C -0.43 -8.00 6.44 72.02 0.46 -7.53 16 19 S 1.29 21.52 13.75 -56.49 -0.78 20.74 16 20 O -0.93 -29.13 18.14 -148.98 -2.70 -31.83 16 21 C -0.43 -7.11 6.44 72.01 0.46 -6.65 16 22 C -0.09 -1.48 4.41 30.49 0.13 -1.34 16 23 C -0.09 -3.55 4.53 30.64 0.14 -3.41 16 24 H 0.26 15.78 6.36 -92.70 -0.59 15.19 16 25 H 0.02 1.04 7.78 -2.39 -0.02 1.02 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.01 0.51 7.31 -2.38 -0.02 0.49 16 29 H 0.35 6.98 7.01 -89.70 -0.63 6.35 16 30 H 0.05 1.33 8.08 -2.38 -0.02 1.31 16 31 H 0.11 1.62 7.87 -2.39 -0.02 1.60 16 32 H 0.06 1.50 5.80 -2.39 -0.01 1.49 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.12 1.12 6.99 -2.39 -0.02 1.10 16 39 H 0.06 2.26 6.11 -2.39 -0.01 2.25 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -75.76 307.37 -0.75 -76.51 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.58 Total: 11.34 kcal Atomic # 6 Polarization: -53.84 SS G_CDS: 2.74 Total: -51.10 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.64 Total: -77.83 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.70 Total: -31.83 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Atomic # 16 Polarization: 21.52 SS G_CDS: -0.78 Total: 20.74 kcal Total: -75.76 -0.75 -76.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.955 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds