Wall clock time and date at job start Mon Mar 30 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.52105 * 60.12200 * 9 7 2 11 11 C 1.53127 * 109.51986 * 300.00144 * 9 7 2 12 12 C 1.53033 * 109.27542 * 182.44103 * 11 9 7 13 13 N 1.46845 * 109.52602 * 59.17839 * 12 11 9 14 14 C 1.46846 * 111.19622 * 298.25851 * 13 12 11 15 15 H 1.08994 * 109.46093 * 301.73208 * 14 13 12 16 16 C 1.53008 * 109.46199 * 181.76071 * 14 13 12 17 17 C 1.52576 * 109.22620 * 180.59576 * 16 14 13 18 18 C 1.53115 * 109.94755 * 168.95725 * 17 16 14 19 19 S 1.81752 * 108.80730 * 63.08515 * 18 17 16 20 20 O 1.42099 * 109.47298 * 190.72035 * 19 18 17 21 21 C 1.81755 * 102.22066 * 306.71770 * 19 18 17 22 22 C 1.52573 * 109.22687 * 59.39714 * 16 14 13 23 23 C 1.53028 * 109.52745 * 61.74237 * 14 13 12 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.49762 * 302.37965 * 11 9 7 26 26 H 1.08998 * 109.50489 * 62.45740 * 11 9 7 27 27 H 1.09000 * 109.45862 * 179.19172 * 12 11 9 28 28 H 1.09004 * 109.46435 * 299.17063 * 12 11 9 29 29 H 1.00900 * 111.00238 * 174.15571 * 13 12 11 30 30 H 1.09008 * 109.21981 * 299.99339 * 16 14 13 31 31 H 1.08994 * 109.39334 * 289.14848 * 17 16 14 32 32 H 1.09006 * 109.39314 * 48.85140 * 17 16 14 33 33 H 1.08995 * 109.61226 * 303.28263 * 18 17 16 34 34 H 1.08997 * 109.68634 * 182.93481 * 18 17 16 35 35 H 1.09007 * 109.57164 * 293.45644 * 21 19 18 36 36 H 1.08997 * 109.57189 * 173.07534 * 21 19 18 37 37 H 1.09001 * 109.39392 * 311.14426 * 22 16 14 38 38 H 1.09000 * 109.39390 * 70.85173 * 22 16 14 39 39 H 1.08998 * 109.50616 * 180.87853 * 23 14 13 40 40 H 1.09001 * 109.50764 * 60.76040 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6261 -2.5581 -0.8927 11 6 0.3697 -2.5823 1.2478 12 6 -0.3460 -3.9347 1.2721 13 7 0.6477 -5.0158 1.2793 14 6 1.4747 -4.9849 0.0663 15 1 0.8350 -5.0726 -0.8118 16 6 2.4646 -6.1513 0.0943 17 6 3.3308 -6.1054 -1.1609 18 6 4.4985 -7.0866 -1.0259 19 16 3.8344 -8.7737 -0.8991 20 8 4.8758 -9.6659 -0.5267 21 6 2.6503 -8.6191 0.4712 22 6 1.6915 -7.4646 0.1681 23 6 2.2449 -3.6639 0.0059 24 1 -0.4849 0.8401 0.0004 25 1 0.9906 -2.4830 2.1382 26 1 -0.3677 -1.7799 1.2271 27 1 -0.9633 -4.0028 2.1679 28 1 -0.9772 -4.0276 0.3882 29 1 0.2032 -5.9148 1.3911 30 1 3.1020 -6.0600 0.9738 31 1 2.7275 -6.3767 -2.0271 32 1 3.7205 -5.0962 -1.2950 33 1 5.0721 -6.8516 -0.1294 34 1 5.1432 -7.0128 -1.9017 35 1 3.1880 -8.4139 1.3970 36 1 2.0858 -9.5459 0.5722 37 1 0.9424 -7.3998 0.9573 38 1 1.1957 -7.6469 -0.7854 39 1 2.8467 -3.6347 -0.9024 40 1 2.8953 -3.5816 0.8768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:32 Heat of formation + Delta-G solvation = -57.051089 kcal Electronic energy + Delta-G solvation = -19605.794151 eV Core-core repulsion = 16738.913370 eV Total energy + Delta-G solvation = -2866.880781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.98502 -36.18756 -35.57672 -33.19494 -31.73950 -30.43881 -30.19720 -26.34214 -25.31770 -23.30128 -21.88548 -21.43793 -19.87554 -18.68359 -17.52246 -16.58105 -15.98608 -15.44202 -15.15993 -14.58632 -14.48069 -14.32695 -13.84629 -13.59068 -13.12825 -12.90609 -12.63465 -12.45450 -12.17987 -12.13704 -11.80003 -11.55434 -11.11906 -10.93410 -10.85117 -10.79051 -10.52728 -10.37975 -10.14621 -9.99722 -9.73367 -9.37727 -8.96501 -8.71194 -8.32633 -8.29918 -7.81345 -5.97988 -4.03517 1.50211 2.45390 3.31852 3.36571 3.39426 3.69814 4.43471 4.51435 4.67964 4.77955 4.96430 4.99101 5.13426 5.27467 5.32177 5.48850 5.65941 5.70142 5.80229 5.89081 5.94535 6.01442 6.02633 6.13501 6.21062 6.38049 6.44687 6.60174 6.64159 6.85412 7.09206 7.16212 7.47689 7.61372 7.79213 7.94928 8.07014 8.16200 8.47592 8.99919 9.60974 11.07876 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.004390 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.039910 B = 6377.153573 C = 7059.991517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.049 3.951 10 H 0.020 0.980 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.686 5.686 14 C 0.097 3.903 15 H 0.034 0.966 16 C -0.097 4.097 17 C -0.097 4.097 18 C -0.431 4.431 19 S 1.223 4.777 20 O -0.867 6.867 21 C -0.432 4.432 22 C -0.094 4.094 23 C -0.102 4.102 24 H 0.260 0.740 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.323 0.677 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -14.993 -3.620 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.030 3.970 10 H 0.038 0.962 11 C -0.145 4.145 12 C -0.070 4.070 13 N -0.319 5.319 14 C -0.012 4.012 15 H 0.052 0.948 16 C -0.116 4.116 17 C -0.136 4.136 18 C -0.569 4.569 19 S 1.423 4.577 20 O -0.863 6.863 21 C -0.570 4.570 22 C -0.133 4.133 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.975 -15.327 -3.771 15.814 hybrid contribution 0.850 1.312 1.457 2.137 sum 1.825 -14.015 -2.315 14.322 Atomic orbital electron populations 1.69866 1.05846 1.26389 1.51000 1.24953 0.94829 0.98954 0.95190 0.86711 0.79646 0.83374 0.78562 1.20360 1.21353 1.20371 1.21162 0.92792 0.90721 1.50264 0.92915 1.18670 0.92678 0.91661 0.93964 0.96174 1.21668 1.00168 0.93310 0.99312 1.22086 0.92867 0.93665 0.98352 1.60430 1.26039 1.06082 1.39336 1.21482 0.93795 0.95284 0.90661 0.94830 1.21309 0.97336 0.94319 0.98676 1.21315 0.94331 0.99889 0.98038 1.27541 1.06122 1.15979 1.07239 1.70268 0.95788 0.83858 1.07819 1.93081 1.56420 1.53936 1.82837 1.27535 1.10442 1.04533 1.14470 1.21260 0.97320 0.91913 1.02815 1.21782 0.98676 0.93234 1.00250 0.93060 0.94046 0.89083 0.92778 0.96288 0.85854 0.90597 0.90411 0.89493 0.89612 0.87028 0.89593 0.87241 0.90625 0.90563 0.92875 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.35 55.43 0.63 -24.39 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.78 8.57 -34.44 -0.30 -14.08 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.17 2.17 -91.64 -0.20 0.97 16 10 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 11 C -0.11 -2.46 5.12 -26.65 -0.14 -2.59 16 12 C 0.06 1.10 6.55 -3.84 -0.03 1.07 16 13 N -0.69 -11.14 6.49 -106.77 -0.69 -11.83 16 14 C 0.10 1.52 2.08 -67.72 -0.14 1.38 16 15 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 16 C -0.10 -1.18 1.71 -91.05 -0.16 -1.34 16 17 C -0.10 -1.02 4.94 -26.89 -0.13 -1.15 16 18 C -0.43 -4.30 6.44 37.22 0.24 -4.06 16 19 S 1.22 11.33 13.75 -107.50 -1.48 9.85 16 20 O -0.87 -13.89 18.14 -35.23 -0.64 -14.53 16 21 C -0.43 -3.99 6.44 37.21 0.24 -3.75 16 22 C -0.09 -0.88 4.96 -26.90 -0.13 -1.01 16 23 C -0.10 -2.00 4.22 -26.66 -0.11 -2.11 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 2.35 6.15 -51.93 -0.32 2.04 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.32 4.32 6.53 -39.29 -0.26 4.07 16 30 H 0.08 1.06 8.08 -51.92 -0.42 0.64 16 31 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.09 1.06 5.86 -51.93 -0.30 0.76 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 38 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.05 0.99 6.21 -51.93 -0.32 0.67 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -33.33 311.46 -9.99 -43.32 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.54 Total: 1.88 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -0.95 Total: -25.08 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.06 Total: -36.23 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.64 Total: -14.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 11.33 SS G_CDS: -1.48 Total: 9.85 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.33 -9.99 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.734 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds