Wall clock time and date at job start Mon Mar 30 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.52105 * 60.12200 * 9 7 2 11 11 C 1.53127 * 109.51986 * 300.00144 * 9 7 2 12 12 C 1.53033 * 109.27542 * 182.44103 * 11 9 7 13 13 N 1.46845 * 109.52602 * 59.17839 * 12 11 9 14 14 C 1.46846 * 111.19622 * 298.25851 * 13 12 11 15 15 H 1.08994 * 109.46093 * 301.73208 * 14 13 12 16 16 C 1.53008 * 109.46199 * 181.76071 * 14 13 12 17 17 C 1.52576 * 109.22620 * 180.59576 * 16 14 13 18 18 C 1.53115 * 109.94755 * 168.95725 * 17 16 14 19 19 S 1.81752 * 108.80730 * 63.08515 * 18 17 16 20 20 O 1.42099 * 109.47298 * 190.72035 * 19 18 17 21 21 C 1.81755 * 102.22066 * 306.71770 * 19 18 17 22 22 C 1.52573 * 109.22687 * 59.39714 * 16 14 13 23 23 C 1.53028 * 109.52745 * 61.74237 * 14 13 12 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.49762 * 302.37965 * 11 9 7 26 26 H 1.08998 * 109.50489 * 62.45740 * 11 9 7 27 27 H 1.09000 * 109.45862 * 179.19172 * 12 11 9 28 28 H 1.09004 * 109.46435 * 299.17063 * 12 11 9 29 29 H 1.00900 * 111.00238 * 174.15571 * 13 12 11 30 30 H 1.09008 * 109.21981 * 299.99339 * 16 14 13 31 31 H 1.08994 * 109.39334 * 289.14848 * 17 16 14 32 32 H 1.09006 * 109.39314 * 48.85140 * 17 16 14 33 33 H 1.08995 * 109.61226 * 303.28263 * 18 17 16 34 34 H 1.08997 * 109.68634 * 182.93481 * 18 17 16 35 35 H 1.09007 * 109.57164 * 293.45644 * 21 19 18 36 36 H 1.08997 * 109.57189 * 173.07534 * 21 19 18 37 37 H 1.09001 * 109.39392 * 311.14426 * 22 16 14 38 38 H 1.09000 * 109.39390 * 70.85173 * 22 16 14 39 39 H 1.08998 * 109.50616 * 180.87853 * 23 14 13 40 40 H 1.09001 * 109.50764 * 60.76040 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6261 -2.5581 -0.8927 11 6 0.3697 -2.5823 1.2478 12 6 -0.3460 -3.9347 1.2721 13 7 0.6477 -5.0158 1.2793 14 6 1.4747 -4.9849 0.0663 15 1 0.8350 -5.0726 -0.8118 16 6 2.4646 -6.1513 0.0943 17 6 3.3308 -6.1054 -1.1609 18 6 4.4985 -7.0866 -1.0259 19 16 3.8344 -8.7737 -0.8991 20 8 4.8758 -9.6659 -0.5267 21 6 2.6503 -8.6191 0.4712 22 6 1.6915 -7.4646 0.1681 23 6 2.2449 -3.6639 0.0059 24 1 -0.4849 0.8401 0.0004 25 1 0.9906 -2.4830 2.1382 26 1 -0.3677 -1.7799 1.2271 27 1 -0.9633 -4.0028 2.1679 28 1 -0.9772 -4.0276 0.3882 29 1 0.2032 -5.9148 1.3911 30 1 3.1020 -6.0600 0.9738 31 1 2.7275 -6.3767 -2.0271 32 1 3.7205 -5.0962 -1.2950 33 1 5.0721 -6.8516 -0.1294 34 1 5.1432 -7.0128 -1.9017 35 1 3.1880 -8.4139 1.3970 36 1 2.0858 -9.5459 0.5722 37 1 0.9424 -7.3998 0.9573 38 1 1.1957 -7.6469 -0.7854 39 1 2.8467 -3.6347 -0.9024 40 1 2.8953 -3.5816 0.8768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260234068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:31 Heat of formation + Delta-G solvation = -81.207257 kcal Electronic energy + Delta-G solvation = -19606.841641 eV Core-core repulsion = 16738.913370 eV Total energy + Delta-G solvation = -2867.928271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26447 -37.44343 -36.68650 -35.00294 -32.83420 -31.94034 -31.59538 -27.69511 -27.03006 -24.36255 -23.18430 -22.92128 -20.96703 -20.33549 -18.38313 -18.34737 -17.47846 -16.54212 -16.48243 -15.99421 -15.55492 -15.43850 -15.00641 -14.74301 -14.48342 -14.39462 -14.10752 -13.86708 -13.54315 -13.32254 -12.87141 -12.80926 -12.69982 -12.53666 -12.29788 -12.09775 -11.96938 -11.86330 -11.58916 -11.46943 -11.27947 -10.75304 -10.64283 -10.46515 -10.30146 -9.21072 -9.15305 -8.06694 -6.19638 0.73055 1.40792 1.41754 1.49119 1.68595 2.43832 2.85701 3.19760 3.33741 3.78492 3.89533 3.98268 4.16377 4.29722 4.38798 4.46418 4.48360 4.58377 4.64368 4.64985 4.87852 4.89981 4.98628 5.00040 5.05255 5.15595 5.20359 5.22693 5.31322 5.35762 5.50025 5.54995 5.63869 5.69575 6.05616 6.07838 6.36846 6.43882 6.79394 6.93252 7.47859 8.96969 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.004390 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.039910 B = 6377.153573 C = 7059.991517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.044 3.956 10 H -0.005 1.005 11 C -0.100 4.100 12 C 0.070 3.930 13 N -0.690 5.690 14 C 0.103 3.897 15 H 0.045 0.955 16 C -0.091 4.091 17 C -0.098 4.098 18 C -0.431 4.431 19 S 1.290 4.710 20 O -0.934 6.934 21 C -0.429 4.429 22 C -0.092 4.092 23 C -0.095 4.095 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.347 0.653 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -16.546 -4.464 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.064 0.936 9 C 0.026 3.974 10 H 0.013 0.987 11 C -0.139 4.139 12 C -0.059 4.059 13 N -0.324 5.324 14 C -0.006 4.006 15 H 0.063 0.937 16 C -0.110 4.110 17 C -0.136 4.136 18 C -0.570 4.570 19 S 1.490 4.510 20 O -0.930 6.930 21 C -0.568 4.568 22 C -0.130 4.130 23 C -0.132 4.132 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.168 0.832 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.463 -16.904 -4.618 17.530 hybrid contribution 0.996 1.867 1.751 2.747 sum 1.458 -15.037 -2.867 15.377 Atomic orbital electron populations 1.69996 1.06960 1.27001 1.51514 1.25673 0.95658 1.02064 0.94967 0.85779 0.78546 0.79667 0.78652 1.19589 1.20837 1.20233 1.21568 0.92798 0.92566 1.50311 0.93610 1.18659 0.93214 0.92442 0.93100 0.98706 1.21456 0.99136 0.95431 0.97839 1.21836 0.92857 0.91890 0.99328 1.60295 1.25645 1.06682 1.39813 1.21391 0.94098 0.94314 0.90840 0.93730 1.21235 0.96577 0.94551 0.98656 1.21340 0.94627 0.99032 0.98636 1.27547 1.06141 1.16252 1.07012 1.69506 0.93383 0.81552 1.06527 1.92960 1.58935 1.56821 1.84253 1.27509 1.10319 1.05762 1.13180 1.21289 0.96892 0.89760 1.05075 1.21643 0.97797 0.94085 0.99709 0.93119 0.96183 0.92266 0.91087 0.96056 0.83175 0.92898 0.86722 0.91495 0.91869 0.85429 0.91627 0.84793 0.90330 0.86783 0.92124 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 11.35 21.45 0.24 -52.27 16 2 C 0.01 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.53 -29.60 8.57 25.60 0.22 -29.38 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.04 2.18 2.17 -11.46 -0.02 2.16 16 10 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 11 C -0.10 -4.74 5.12 30.65 0.16 -4.59 16 12 C 0.07 2.53 6.55 86.32 0.57 3.10 16 13 N -0.69 -21.03 6.49 -491.70 -3.19 -24.22 16 14 C 0.10 3.04 2.08 44.94 0.09 3.13 16 15 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 16 C -0.09 -2.01 1.71 -11.07 -0.02 -2.02 16 17 C -0.10 -1.82 4.94 30.49 0.15 -1.67 16 18 C -0.43 -7.84 6.44 72.02 0.46 -7.37 16 19 S 1.29 20.72 13.75 -56.49 -0.78 19.94 16 20 O -0.93 -28.87 18.14 -148.98 -2.70 -31.58 16 21 C -0.43 -6.57 6.44 72.02 0.46 -6.11 16 22 C -0.09 -1.34 4.96 30.49 0.15 -1.19 16 23 C -0.09 -3.73 4.22 30.64 0.13 -3.60 16 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 3.17 6.15 -2.39 -0.01 3.15 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.35 8.10 6.53 -89.69 -0.59 7.51 16 30 H 0.05 1.42 8.08 -2.38 -0.02 1.40 16 31 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 32 H 0.07 1.55 5.86 -2.38 -0.01 1.54 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.17 5.97 -2.39 -0.01 1.15 16 38 H 0.11 0.90 8.05 -2.39 -0.02 0.88 16 39 H 0.06 2.26 6.21 -2.39 -0.01 2.25 16 40 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.14 311.46 -1.17 -76.31 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.43 Total: 12.24 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 2.80 Total: -46.26 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.95 Total: -76.50 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -2.70 Total: -31.58 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 20.72 SS G_CDS: -0.78 Total: 19.94 kcal Total: -75.14 -1.17 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.896 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds