Wall clock time and date at job start Mon Mar 30 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48497 * 109.46801 * 239.99936 * 3 2 1 5 5 H 1.48500 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46932 * 119.99885 * 3 2 1 7 7 C 1.37877 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50712 * 120.00064 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.22198 * 26.54650 * 9 7 2 11 11 C 1.49436 * 109.22584 * 145.95420 * 9 7 2 12 12 C 1.52401 * 105.29117 * 219.10696 * 11 9 7 13 13 S 1.74765 * 114.53112 * 269.47781 * 12 11 9 14 14 C 1.85007 * 101.65368 * 61.32161 * 13 12 11 15 15 C 1.50340 * 108.78061 * 292.81469 * 14 13 12 16 16 N 1.47456 * 109.22419 * 267.18193 * 9 7 2 17 17 C 1.46899 * 111.00296 * 327.66260 * 16 9 7 18 18 C 1.53005 * 109.47413 * 168.52349 * 17 16 9 19 19 H 1.08995 * 109.86358 * 58.99647 * 18 17 16 20 20 C 1.54098 * 109.87681 * 179.97438 * 18 17 16 21 21 C 1.54814 * 104.18709 * 121.45893 * 20 18 17 22 22 C 1.54994 * 102.09218 * 20.87676 * 21 20 18 23 23 O 1.43739 * 109.87623 * 297.83239 * 18 17 16 24 24 H 0.97008 * 120.00154 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.27511 * 100.16928 * 11 9 7 26 26 H 1.09002 * 110.40063 * 338.11206 * 11 9 7 27 27 H 1.09003 * 108.47637 * 148.16622 * 12 11 9 28 28 H 1.08999 * 108.47137 * 30.78204 * 12 11 9 29 29 H 1.08997 * 109.58543 * 52.61083 * 14 13 12 30 30 H 1.09007 * 109.58249 * 173.02612 * 14 13 12 31 31 H 1.08994 * 107.96511 * 212.61118 * 15 14 13 32 32 H 1.09006 * 107.95924 * 328.85488 * 15 14 13 33 33 H 1.09002 * 109.47162 * 288.52936 * 17 16 9 34 34 H 1.09004 * 109.47078 * 48.52331 * 17 16 9 35 35 H 1.09000 * 110.48858 * 240.12811 * 20 18 17 36 36 H 1.09000 * 110.49398 * 2.77545 * 20 18 17 37 37 H 1.08994 * 110.90870 * 139.07860 * 21 20 18 38 38 H 1.09001 * 110.90286 * 262.64835 * 21 20 18 39 39 H 1.08995 * 110.61882 * 81.47699 * 22 21 20 40 40 H 1.09003 * 110.62085 * 204.32540 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4993 0.0005 10 1 0.2743 -2.3498 -0.4598 11 6 2.0176 -3.5102 -0.7889 12 6 0.9664 -4.2998 -1.5596 13 16 0.3636 -5.7121 -0.7253 14 6 -0.3893 -4.9593 0.7878 15 6 0.7074 -4.3783 1.6362 16 7 1.0669 -2.9536 1.3912 17 6 2.1988 -2.5440 2.2331 18 6 1.8495 -2.7744 3.7048 19 1 1.6212 -3.8271 3.8709 20 6 3.0316 -2.3481 4.5968 21 6 2.4345 -1.2624 5.5249 22 6 0.9170 -1.5683 5.4479 23 8 0.7218 -1.9625 4.0723 24 1 -0.4851 0.8401 0.0004 25 1 2.5712 -4.1703 -0.1210 26 1 2.6997 -3.0149 -1.4800 27 1 1.3996 -4.6176 -2.5080 28 1 0.1257 -3.6394 -1.7724 29 1 -1.0831 -4.1706 0.4969 30 1 -0.9203 -5.7262 1.3518 31 1 0.4116 -4.4755 2.6808 32 1 1.6032 -4.9813 1.4868 33 1 3.0779 -3.1332 1.9718 34 1 2.4086 -1.4868 2.0706 35 1 3.3924 -3.1939 5.1821 36 1 3.8362 -1.9316 3.9908 37 1 2.8030 -1.3765 6.5443 38 1 2.6503 -0.2640 5.1446 39 1 0.6552 -2.3842 6.1214 40 1 0.3335 -0.6775 5.6808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:15 Heat of formation + Delta-G solvation = -50.834325 kcal Electronic energy + Delta-G solvation = -20414.546660 eV Core-core repulsion = 17547.935458 eV Total energy + Delta-G solvation = -2866.611202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45072 -38.90887 -34.81901 -34.04295 -32.96723 -32.34608 -30.29778 -28.14400 -25.90340 -24.64306 -23.95392 -22.75843 -21.75790 -20.32751 -18.48484 -17.88519 -17.25716 -16.79234 -16.55700 -16.24048 -15.88878 -15.73068 -15.08310 -14.60355 -14.43923 -14.37994 -14.05462 -13.88879 -13.24750 -13.19267 -13.06827 -12.82493 -12.59259 -12.49472 -12.44510 -12.19445 -12.00245 -11.80128 -11.60527 -11.39488 -11.22654 -11.04573 -10.66664 -10.47350 -10.31799 -8.63553 -8.32923 -8.07354 -6.17329 0.92055 1.40392 1.41110 1.48007 1.57332 2.42774 2.95705 3.19379 3.55274 3.77614 3.91887 3.99610 4.07145 4.09373 4.16823 4.26386 4.42099 4.46612 4.50105 4.55670 4.69372 4.79550 4.86870 4.92441 4.95787 4.97575 5.00163 5.05889 5.07982 5.11096 5.23015 5.31405 5.54401 5.62523 5.83472 6.08342 6.30221 6.85006 6.91523 7.18362 7.47646 8.99556 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.009607 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.550169 B = 2913.759325 C = 4518.650160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.035 3.965 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.050 0.950 9 C 0.222 3.778 10 H 0.029 0.971 11 C -0.125 4.125 12 C -0.105 4.105 13 S -0.252 6.252 14 C -0.057 4.057 15 C 0.071 3.929 16 N -0.573 5.573 17 C 0.092 3.908 18 C 0.077 3.923 19 H 0.065 0.935 20 C -0.148 4.148 21 C -0.147 4.147 22 C 0.033 3.967 23 O -0.385 6.385 24 H 0.258 0.742 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -7.254 8.608 11.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.117 3.883 10 H 0.047 0.953 11 C -0.166 4.166 12 C -0.253 4.253 13 S -0.026 6.026 14 C -0.205 4.205 15 C -0.057 4.057 16 N -0.300 5.300 17 C -0.036 4.036 18 C 0.019 3.981 19 H 0.083 0.917 20 C -0.186 4.186 21 C -0.185 4.185 22 C -0.043 4.043 23 O -0.304 6.304 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.325 -7.957 8.222 11.916 hybrid contribution 0.907 2.068 -0.204 2.267 sum 4.232 -5.889 8.018 10.811 Atomic orbital electron populations 1.70077 1.07338 1.26943 1.49575 1.25603 0.95271 1.01913 0.93979 0.85893 0.78607 0.79984 0.78831 1.19490 1.21477 1.19664 1.21185 0.92242 0.91415 1.51345 0.93228 1.18776 0.94612 0.91177 0.83694 0.95312 1.21774 0.97372 0.98126 0.99359 1.22614 1.01884 0.98748 1.02091 1.85660 1.74102 1.15600 1.27244 1.23387 0.99678 1.02515 0.94926 1.21836 0.96104 0.88604 0.99179 1.60323 1.41932 1.16053 1.11706 1.21828 0.90417 1.01161 0.90161 1.22956 0.86101 0.94324 0.94704 0.91686 1.22984 0.97836 0.99915 0.97830 1.23089 0.95344 0.98896 1.01163 1.23726 0.96367 1.00165 0.84055 1.89115 1.43499 1.70089 1.27740 0.93299 0.92225 0.91575 0.87955 0.91985 0.91131 0.84977 0.90713 0.95400 0.96206 0.91343 0.88451 0.91074 0.87586 0.92048 0.90914 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.22 12.81 21.45 0.27 -52.95 16 2 C 0.03 1.90 5.46 84.65 0.46 2.36 16 3 Si 0.94 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -27.82 5.40 25.60 0.14 -27.68 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.22 10.86 2.14 42.93 0.09 10.95 16 10 H 0.03 1.64 5.96 -2.39 -0.01 1.63 16 11 C -0.12 -5.22 5.25 29.26 0.15 -5.07 16 12 C -0.10 -3.95 5.48 71.78 0.39 -3.55 16 13 S -0.25 -8.51 21.74 -56.49 -1.23 -9.74 16 14 C -0.06 -1.94 6.29 71.12 0.45 -1.49 16 15 C 0.07 2.59 4.22 85.04 0.36 2.94 16 16 N -0.57 -25.64 4.37 -880.16 -3.85 -29.49 16 17 C 0.09 3.84 4.00 86.31 0.34 4.19 16 18 C 0.08 2.65 3.05 30.97 0.09 2.74 16 19 H 0.07 2.06 6.35 -2.39 -0.02 2.04 16 20 C -0.15 -3.90 6.64 31.58 0.21 -3.69 16 21 C -0.15 -3.60 7.15 31.90 0.23 -3.37 16 22 C 0.03 0.94 7.72 72.66 0.56 1.50 16 23 O -0.39 -15.20 11.10 -148.98 -1.65 -16.86 16 24 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 25 H 0.06 2.41 6.57 -2.39 -0.02 2.40 16 26 H 0.07 2.80 7.70 -2.39 -0.02 2.79 16 27 H 0.10 3.45 8.14 -4.39 -0.04 3.41 16 28 H 0.06 2.62 6.88 -4.40 -0.03 2.59 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.13 3.54 8.14 -2.38 -0.02 3.52 16 31 H 0.07 2.56 6.25 -2.39 -0.01 2.54 16 32 H 0.03 1.00 6.71 -2.38 -0.02 0.98 16 33 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.07 3.36 6.05 -2.39 -0.01 3.35 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.97 7.70 -2.39 -0.02 1.95 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -62.58 313.22 0.04 -62.54 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.98 Total: 21.14 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.48 Total: -20.16 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.57 Total: -82.43 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.65 Total: -16.86 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.23 Total: -9.74 kcal Total: -62.58 0.04 -62.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.709 kcal (2) G-P(sol) polarization free energy of solvation -62.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds