Wall clock time and date at job start Mon Mar 30 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00057 * 2 1 4 4 H 1.48506 * 109.46602 * 264.53351 * 3 2 1 5 5 H 1.48496 * 109.46986 * 24.53032 * 3 2 1 6 6 H 1.48496 * 109.47421 * 144.53816 * 3 2 1 7 7 C 1.37874 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00025 * 5.22789 * 7 2 1 9 9 C 1.50702 * 119.99952 * 185.23089 * 7 2 1 10 10 H 1.08996 * 109.19463 * 34.46111 * 9 7 2 11 11 C 1.49643 * 109.28903 * 153.96410 * 9 7 2 12 12 C 1.52411 * 105.20479 * 219.22822 * 11 9 7 13 13 S 1.74756 * 114.40060 * 269.28780 * 12 11 9 14 14 C 1.85019 * 101.65844 * 61.40519 * 13 12 11 15 15 C 1.50342 * 108.77112 * 292.80005 * 14 13 12 16 16 N 1.47459 * 109.22577 * 275.07527 * 9 7 2 17 17 C 1.46903 * 111.00205 * 327.65824 * 16 9 7 18 18 C 1.53001 * 109.47064 * 149.20998 * 17 16 9 19 19 H 1.09008 * 109.82344 * 305.56974 * 18 17 16 20 20 C 1.54380 * 109.83224 * 184.59261 * 18 17 16 21 21 C 1.55298 * 102.25102 * 219.13062 * 20 18 17 22 22 C 1.54941 * 100.94561 * 34.13217 * 21 20 18 23 23 O 1.43232 * 109.82996 * 66.45464 * 18 17 16 24 24 H 0.97003 * 119.99996 * 0.02562 * 1 2 3 25 25 H 1.09005 * 110.41263 * 100.26658 * 11 9 7 26 26 H 1.08997 * 110.21974 * 338.09408 * 11 9 7 27 27 H 1.09000 * 108.46951 * 148.06900 * 12 11 9 28 28 H 1.08993 * 108.47367 * 30.51463 * 12 11 9 29 29 H 1.08991 * 109.58525 * 52.59120 * 14 13 12 30 30 H 1.09000 * 109.58158 * 172.87486 * 14 13 12 31 31 H 1.08989 * 107.96128 * 212.61195 * 15 14 13 32 32 H 1.09005 * 107.95812 * 328.89727 * 15 14 13 33 33 H 1.09000 * 109.47053 * 269.21005 * 17 16 9 34 34 H 1.09006 * 109.46706 * 29.21182 * 17 16 9 35 35 H 1.08998 * 110.84409 * 337.31773 * 20 18 17 36 36 H 1.09001 * 110.84733 * 100.93739 * 20 18 17 37 37 H 1.09005 * 111.12320 * 276.20572 * 21 20 18 38 38 H 1.09005 * 111.15954 * 152.06833 * 21 20 18 39 39 H 1.09004 * 110.30968 * 204.64180 * 22 21 20 40 40 H 1.08995 * 110.30979 * 82.47268 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6121 1.9797 -1.3938 5 1 1.3936 2.6833 0.5813 6 1 3.4842 1.4763 0.8122 7 6 2.0045 -1.1940 0.0005 8 1 1.4679 -2.1274 -0.0843 9 6 3.5068 -1.1966 0.1195 10 1 3.8165 -0.3757 0.7662 11 6 3.9530 -2.4933 0.7187 12 6 5.0898 -2.1261 1.6651 13 16 6.6768 -2.1585 0.9339 14 6 6.5072 -0.8717 -0.3847 15 6 5.5334 -1.3643 -1.4189 16 7 4.1001 -1.0118 -1.2177 17 6 3.2577 -1.6202 -2.2561 18 6 3.4051 -0.8317 -3.5590 19 1 3.1895 0.2217 -3.3800 20 6 2.4374 -1.3928 -4.6230 21 6 3.2941 -1.3244 -5.9165 22 6 4.7059 -1.6192 -5.3502 23 8 4.7368 -0.9758 -4.0662 24 1 -0.4850 0.8401 -0.0004 25 1 4.3117 -3.1678 -0.0588 26 1 3.1347 -2.9539 1.2721 27 1 5.0811 -2.8239 2.5024 28 1 4.9077 -1.1232 2.0509 29 1 6.1368 0.0546 0.0542 30 1 7.4774 -0.6940 -0.8486 31 1 5.8436 -0.9709 -2.3868 32 1 5.6090 -2.4509 -1.4611 33 1 3.5695 -2.6519 -2.4186 34 1 2.2160 -1.6015 -1.9359 35 1 2.1631 -2.4224 -4.3934 36 1 1.5510 -0.7644 -4.7111 37 1 3.2500 -0.3318 -6.3649 38 1 2.9898 -2.0893 -6.6310 39 1 5.4708 -1.1984 -6.0028 40 1 4.8520 -2.6936 -5.2386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:18 Heat of formation + Delta-G solvation = -34.966062 kcal Electronic energy + Delta-G solvation = -20547.148890 eV Core-core repulsion = 17681.225788 eV Total energy + Delta-G solvation = -2865.923102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.23068 -37.46128 -32.96527 -32.46971 -31.85130 -31.02113 -29.02698 -26.78427 -24.42398 -23.09615 -22.13522 -21.40835 -20.53781 -18.61876 -16.99635 -16.59489 -16.38932 -15.67346 -15.01771 -14.61327 -14.29841 -13.96202 -13.42479 -13.25901 -13.10504 -12.95270 -12.52669 -12.44430 -12.19137 -11.89525 -11.65586 -11.37926 -11.20976 -10.98275 -10.89231 -10.56578 -10.50484 -10.15012 -10.10650 -9.94441 -9.69115 -9.31747 -8.99520 -8.96462 -8.65930 -7.28741 -6.95459 -6.19852 -4.21694 2.24962 2.96355 3.35576 3.40669 3.49693 4.21676 4.41145 4.59858 4.80828 5.06192 5.18606 5.24817 5.43889 5.48106 5.50581 5.60022 5.63135 5.77978 5.84683 5.91388 5.91944 6.01236 6.07042 6.15459 6.19237 6.33679 6.44360 6.49105 6.60931 6.69246 6.75961 6.84330 7.10682 7.24202 7.52366 7.56716 8.09283 8.46753 8.52079 8.83079 9.43129 10.89754 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.010232 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.125045 B = 2735.790969 C = 4156.668298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.083 3.917 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.177 3.823 10 H 0.049 0.951 11 C -0.127 4.127 12 C -0.107 4.107 13 S -0.276 6.276 14 C -0.060 4.060 15 C 0.064 3.936 16 N -0.572 5.572 17 C 0.059 3.941 18 C 0.084 3.916 19 H 0.080 0.920 20 C -0.148 4.148 21 C -0.156 4.156 22 C 0.049 3.951 23 O -0.376 6.376 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.014 0.986 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -2.302 -7.147 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.122 4.122 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.093 0.907 9 C 0.073 3.927 10 H 0.067 0.933 11 C -0.168 4.168 12 C -0.256 4.256 13 S -0.050 6.050 14 C -0.208 4.208 15 C -0.064 4.064 16 N -0.299 5.299 17 C -0.068 4.068 18 C 0.027 3.973 19 H 0.098 0.902 20 C -0.186 4.186 21 C -0.194 4.194 22 C -0.028 4.028 23 O -0.296 6.296 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.193 -2.320 -6.749 11.638 hybrid contribution -0.845 0.732 -0.217 1.139 sum 8.348 -1.588 -6.966 10.988 Atomic orbital electron populations 1.69930 1.06508 1.27450 1.48860 1.25048 0.94561 0.99467 0.93101 0.86543 0.79298 0.82289 0.79340 1.19492 1.22819 1.19388 1.20899 0.88415 0.94488 1.51195 0.90738 1.19633 0.95048 0.92106 0.85946 0.93319 1.21823 0.95987 1.00921 0.98088 1.22770 0.95860 1.05316 1.01663 1.85883 1.19357 1.55265 1.44538 1.23417 1.02455 0.98432 0.96515 1.21974 0.88377 0.98051 0.98033 1.60643 0.99232 1.64080 1.05958 1.22448 1.02418 0.92984 0.88995 1.23043 0.80391 1.00553 0.93319 0.90169 1.23108 0.99082 1.02507 0.93883 1.23237 0.95872 1.02224 0.98076 1.23273 0.96635 0.97137 0.85770 1.88440 1.28161 1.80247 1.32787 0.92468 0.91939 0.90394 0.89340 0.90264 0.89564 0.88098 0.89183 0.95316 0.96741 0.85415 0.90577 0.90189 0.90859 0.90634 0.90755 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.90 21.73 27.25 -169.99 -4.63 17.10 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.27 -6.42 6.14 56.52 0.35 -6.07 16 7 C -0.51 -13.10 5.83 -34.44 -0.20 -13.30 16 8 H 0.07 2.07 7.97 -52.49 -0.42 1.65 16 9 C 0.18 3.93 1.45 -70.22 -0.10 3.83 16 10 H 0.05 1.17 4.31 -51.93 -0.22 0.94 16 11 C -0.13 -2.54 5.25 -28.69 -0.15 -2.69 16 12 C -0.11 -1.93 5.49 36.86 0.20 -1.73 16 13 S -0.28 -4.72 21.73 -107.50 -2.34 -7.05 16 14 C -0.06 -1.01 6.30 35.83 0.23 -0.78 16 15 C 0.06 1.17 4.38 -4.00 -0.02 1.15 16 16 N -0.57 -11.89 3.84 -229.43 -0.88 -12.77 16 17 C 0.06 1.19 4.49 -3.82 -0.02 1.17 16 18 C 0.08 1.51 3.75 -26.01 -0.10 1.41 16 19 H 0.08 1.61 8.14 -51.92 -0.42 1.18 16 20 C -0.15 -2.17 6.54 -24.79 -0.16 -2.34 16 21 C -0.16 -1.89 7.15 -24.49 -0.18 -2.06 16 22 C 0.05 0.64 7.78 38.18 0.30 0.93 16 23 O -0.38 -6.38 8.22 -35.23 -0.29 -6.67 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.06 1.26 6.60 -51.93 -0.34 0.92 16 26 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 27 H 0.09 1.45 8.14 -48.77 -0.40 1.06 16 28 H 0.08 1.49 6.87 -48.77 -0.34 1.16 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.65 5.52 -51.94 -0.29 1.36 16 32 H 0.03 0.55 6.53 -51.93 -0.34 0.21 16 33 H 0.01 0.29 7.86 -51.93 -0.41 -0.12 16 34 H 0.13 2.93 5.28 -51.93 -0.27 2.66 16 35 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -27.32 307.28 -9.43 -36.75 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.40 Total: 4.90 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.30 Total: -12.26 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.11 Total: -37.40 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.29 Total: -6.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.63 Total: 17.10 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -2.34 Total: -7.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.32 -9.43 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.788 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds