Wall clock time and date at job start Mon Mar 30 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47336 * 89.99601 * 3 2 1 5 5 H 1.48501 * 109.47167 * 209.99855 * 3 2 1 6 6 H 1.48497 * 109.47117 * 329.99621 * 3 2 1 7 7 C 1.37870 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.94780 * 54.76242 * 9 7 2 11 11 C 1.53013 * 109.96907 * 293.53579 * 9 7 2 12 12 C 1.45860 * 115.26393 * 148.14995 * 11 9 7 13 13 S 1.83749 * 109.14541 * 64.21603 * 12 11 9 14 14 C 1.80177 * 102.69034 * 292.58960 * 13 12 11 15 15 C 1.53619 * 113.03751 * 84.92856 * 14 13 12 16 16 N 1.45544 * 109.96535 * 175.98276 * 9 7 2 17 17 C 1.46895 * 111.00229 * 346.70484 * 16 9 7 18 18 C 1.52997 * 109.47281 * 178.10822 * 17 16 9 19 19 H 1.09001 * 109.87126 * 58.99066 * 18 17 16 20 20 C 1.54101 * 109.88008 * 180.02562 * 18 17 16 21 21 C 1.54808 * 104.18549 * 121.45584 * 20 18 17 22 22 C 1.54998 * 102.09720 * 20.87729 * 21 20 18 23 23 O 1.43742 * 109.87688 * 297.83223 * 18 17 16 24 24 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 25 25 H 1.08995 * 108.32375 * 269.65282 * 11 9 7 26 26 H 1.09003 * 108.32277 * 26.84119 * 11 9 7 27 27 H 1.09004 * 109.52321 * 184.11042 * 12 11 9 28 28 H 1.09001 * 109.52752 * 304.24524 * 12 11 9 29 29 H 1.09000 * 108.77272 * 205.84947 * 14 13 12 30 30 H 1.08996 * 108.77136 * 324.01414 * 14 13 12 31 31 H 1.09000 * 108.14696 * 77.31881 * 15 14 13 32 32 H 1.08998 * 108.15274 * 193.86737 * 15 14 13 33 33 H 1.08998 * 109.47340 * 298.11035 * 17 16 9 34 34 H 1.09008 * 109.47109 * 58.10657 * 17 16 9 35 35 H 1.09003 * 110.48433 * 240.12403 * 20 18 17 36 36 H 1.08996 * 110.48549 * 2.64277 * 20 18 17 37 37 H 1.08999 * 110.91255 * 139.07820 * 21 20 18 38 38 H 1.09001 * 110.90546 * 262.68187 * 21 20 18 39 39 H 1.09002 * 110.61675 * 81.47873 * 22 21 20 40 40 H 1.08995 * 110.62138 * 204.31851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5528 -2.5262 -0.8349 11 6 0.4929 -2.6637 1.3206 12 6 -0.7627 -3.4004 1.2292 13 16 -0.4104 -5.1310 0.7220 14 6 0.1876 -4.9347 -0.9663 15 6 1.6891 -4.6184 -1.0393 16 7 2.1843 -3.6119 -0.0937 17 6 3.5235 -3.1445 -0.4758 18 6 4.4853 -4.3335 -0.5198 19 1 4.1281 -5.0727 -1.2368 20 6 5.8941 -3.8533 -0.9192 21 6 6.7921 -4.2845 0.2658 22 6 5.9455 -5.4034 0.9245 23 8 4.5905 -4.9256 0.7858 24 1 -0.4851 0.8400 -0.0004 25 1 1.1426 -3.1801 2.0272 26 1 0.2770 -1.6718 1.7178 27 1 -1.2574 -3.3991 2.2005 28 1 -1.4096 -2.9276 0.4902 29 1 -0.0038 -5.8566 -1.5156 30 1 -0.3650 -4.1246 -1.4421 31 1 2.2396 -5.5439 -0.8704 32 1 1.9150 -4.2747 -2.0487 33 1 3.4783 -2.6771 -1.4594 34 1 3.8772 -2.4179 0.2558 35 1 6.2166 -4.3408 -1.8393 36 1 5.9087 -2.7699 -1.0371 37 1 7.7448 -4.6763 -0.0905 38 1 6.9477 -3.4565 0.9573 39 1 6.0765 -6.3466 0.3940 40 1 6.2096 -5.5160 1.9760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:21 Heat of formation + Delta-G solvation = -27.955331 kcal Electronic energy + Delta-G solvation = -20281.843472 eV Core-core repulsion = 17416.224377 eV Total energy + Delta-G solvation = -2865.619094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27441 -37.45799 -33.39422 -32.10121 -31.74224 -30.86138 -29.04804 -26.41843 -24.68503 -22.89283 -22.25988 -21.33434 -20.20047 -18.99178 -16.73630 -16.17773 -15.64007 -15.29530 -15.05074 -14.84216 -14.36386 -14.13003 -13.77963 -13.36902 -13.07689 -12.68654 -12.39962 -12.27110 -11.64009 -11.60147 -11.50763 -11.35498 -11.09176 -10.94905 -10.84801 -10.73110 -10.53789 -10.38089 -9.94548 -9.78387 -9.68058 -9.14271 -8.97361 -8.64017 -8.42330 -7.10355 -6.82974 -6.12006 -4.17961 2.57936 3.23559 3.30921 3.32009 3.33431 4.22712 4.33766 4.79714 4.88948 5.05959 5.16242 5.20336 5.34188 5.45428 5.55869 5.58757 5.82600 5.85453 5.89676 5.90502 5.95513 6.08729 6.15001 6.17146 6.23628 6.28140 6.43970 6.52453 6.73727 6.81353 7.10166 7.26845 7.34162 7.41417 7.70088 7.82680 8.00174 8.31031 8.58487 8.92574 9.49596 10.95323 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.009206 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.745677 B = 3040.886863 C = 4762.266043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.213 3.787 10 H 0.016 0.984 11 C -0.107 4.107 12 C -0.039 4.039 13 S -0.294 6.294 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.512 5.512 17 C 0.074 3.926 18 C 0.074 3.926 19 H 0.057 0.943 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.346 6.346 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -7.837 -1.886 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.106 3.894 10 H 0.033 0.967 11 C -0.147 4.147 12 C -0.186 4.186 13 S -0.069 6.069 14 C -0.223 4.223 15 C -0.067 4.067 16 N -0.236 5.236 17 C -0.054 4.054 18 C 0.015 3.985 19 H 0.074 0.926 20 C -0.191 4.191 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.264 6.264 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.842 -8.885 -0.691 11.236 hybrid contribution 0.638 2.450 -1.743 3.074 sum 7.480 -6.436 -2.434 10.164 Atomic orbital electron populations 1.69959 1.05915 1.26720 1.49731 1.24977 0.94820 0.99135 0.94806 0.86614 0.79827 0.83476 0.78230 1.20540 1.19931 1.21298 1.21766 0.93828 0.90171 1.51533 0.90698 1.19079 0.90345 0.87068 0.92896 0.96669 1.20523 0.93232 0.99667 1.01233 1.22434 1.02252 0.90999 1.02916 1.86239 1.84259 1.17529 1.18833 1.23202 0.98758 1.04239 0.96070 1.22098 0.93369 0.97408 0.93864 1.62151 1.02091 1.13741 1.45583 1.22384 0.88931 0.93980 1.00125 1.23014 0.94710 0.95451 0.85282 0.92558 1.22984 0.95180 1.02631 0.98283 1.23110 0.98612 0.99525 0.97912 1.23481 0.83441 0.95821 1.00867 1.89101 1.27016 1.76996 1.33332 0.92907 0.92640 0.90350 0.89881 0.90617 0.88940 0.90367 0.92106 0.96225 0.94075 0.88622 0.91337 0.90230 0.90990 0.90566 0.93129 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 12.16 55.43 0.67 -23.49 16 2 C 0.07 1.73 5.07 -17.82 -0.09 1.64 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -13.82 7.50 -34.44 -0.26 -14.08 16 8 H 0.08 1.89 4.70 -52.48 -0.25 1.64 16 9 C 0.21 5.13 1.81 -69.59 -0.13 5.01 16 10 H 0.02 0.41 6.07 -51.93 -0.32 0.10 16 11 C -0.11 -2.51 4.40 -30.10 -0.13 -2.64 16 12 C -0.04 -0.81 6.15 33.78 0.21 -0.60 16 13 S -0.29 -5.75 21.84 -107.50 -2.35 -8.10 16 14 C -0.07 -1.34 5.60 37.48 0.21 -1.13 16 15 C 0.06 1.20 4.46 -3.60 -0.02 1.19 16 16 N -0.51 -10.96 4.06 -228.86 -0.93 -11.89 16 17 C 0.07 1.45 3.04 -3.83 -0.01 1.44 16 18 C 0.07 1.21 3.09 -26.16 -0.08 1.13 16 19 H 0.06 0.91 6.64 -51.93 -0.34 0.56 16 20 C -0.15 -2.01 6.64 -25.20 -0.17 -2.18 16 21 C -0.15 -1.81 7.15 -24.72 -0.18 -1.99 16 22 C 0.04 0.54 7.72 38.21 0.29 0.84 16 23 O -0.35 -6.19 11.10 -35.23 -0.39 -6.58 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.05 1.35 7.88 -51.93 -0.41 0.94 16 26 H 0.08 2.04 6.50 -51.93 -0.34 1.70 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.09 1.43 8.14 -51.74 -0.42 1.01 16 30 H 0.08 1.50 7.03 -51.75 -0.36 1.14 16 31 H 0.06 1.11 6.95 -51.93 -0.36 0.75 16 32 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 33 H 0.04 0.83 7.82 -51.93 -0.41 0.42 16 34 H 0.10 2.06 5.95 -51.92 -0.31 1.76 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -27.86 311.24 -10.09 -37.95 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.42 Total: 3.34 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.35 Total: -11.39 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.26 Total: -35.38 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.39 Total: -6.58 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -2.35 Total: -8.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.86 -10.09 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.998 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds