Wall clock time and date at job start Mon Mar 30 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47336 * 89.99601 * 3 2 1 5 5 H 1.48501 * 109.47167 * 209.99855 * 3 2 1 6 6 H 1.48497 * 109.47117 * 329.99621 * 3 2 1 7 7 C 1.37870 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.94780 * 54.76242 * 9 7 2 11 11 C 1.53013 * 109.96907 * 293.53579 * 9 7 2 12 12 C 1.45860 * 115.26393 * 148.14995 * 11 9 7 13 13 S 1.83749 * 109.14541 * 64.21603 * 12 11 9 14 14 C 1.80177 * 102.69034 * 292.58960 * 13 12 11 15 15 C 1.53619 * 113.03751 * 84.92856 * 14 13 12 16 16 N 1.45544 * 109.96535 * 175.98276 * 9 7 2 17 17 C 1.46895 * 111.00229 * 346.70484 * 16 9 7 18 18 C 1.52997 * 109.47281 * 178.10822 * 17 16 9 19 19 H 1.09001 * 109.87126 * 58.99066 * 18 17 16 20 20 C 1.54101 * 109.88008 * 180.02562 * 18 17 16 21 21 C 1.54808 * 104.18549 * 121.45584 * 20 18 17 22 22 C 1.54998 * 102.09720 * 20.87729 * 21 20 18 23 23 O 1.43742 * 109.87688 * 297.83223 * 18 17 16 24 24 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 25 25 H 1.08995 * 108.32375 * 269.65282 * 11 9 7 26 26 H 1.09003 * 108.32277 * 26.84119 * 11 9 7 27 27 H 1.09004 * 109.52321 * 184.11042 * 12 11 9 28 28 H 1.09001 * 109.52752 * 304.24524 * 12 11 9 29 29 H 1.09000 * 108.77272 * 205.84947 * 14 13 12 30 30 H 1.08996 * 108.77136 * 324.01414 * 14 13 12 31 31 H 1.09000 * 108.14696 * 77.31881 * 15 14 13 32 32 H 1.08998 * 108.15274 * 193.86737 * 15 14 13 33 33 H 1.08998 * 109.47340 * 298.11035 * 17 16 9 34 34 H 1.09008 * 109.47109 * 58.10657 * 17 16 9 35 35 H 1.09003 * 110.48433 * 240.12403 * 20 18 17 36 36 H 1.08996 * 110.48549 * 2.64277 * 20 18 17 37 37 H 1.08999 * 110.91255 * 139.07820 * 21 20 18 38 38 H 1.09001 * 110.90546 * 262.68187 * 21 20 18 39 39 H 1.09002 * 110.61675 * 81.47873 * 22 21 20 40 40 H 1.08995 * 110.62138 * 204.31851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5528 -2.5262 -0.8349 11 6 0.4929 -2.6637 1.3206 12 6 -0.7627 -3.4004 1.2292 13 16 -0.4104 -5.1310 0.7220 14 6 0.1876 -4.9347 -0.9663 15 6 1.6891 -4.6184 -1.0393 16 7 2.1843 -3.6119 -0.0937 17 6 3.5235 -3.1445 -0.4758 18 6 4.4853 -4.3335 -0.5198 19 1 4.1281 -5.0727 -1.2368 20 6 5.8941 -3.8533 -0.9192 21 6 6.7921 -4.2845 0.2658 22 6 5.9455 -5.4034 0.9245 23 8 4.5905 -4.9256 0.7858 24 1 -0.4851 0.8400 -0.0004 25 1 1.1426 -3.1801 2.0272 26 1 0.2770 -1.6718 1.7178 27 1 -1.2574 -3.3991 2.2005 28 1 -1.4096 -2.9276 0.4902 29 1 -0.0038 -5.8566 -1.5156 30 1 -0.3650 -4.1246 -1.4421 31 1 2.2396 -5.5439 -0.8704 32 1 1.9150 -4.2747 -2.0487 33 1 3.4783 -2.6771 -1.4594 34 1 3.8772 -2.4179 0.2558 35 1 6.2166 -4.3408 -1.8393 36 1 5.9087 -2.7699 -1.0371 37 1 7.7448 -4.6763 -0.0905 38 1 6.9477 -3.4565 0.9573 39 1 6.0765 -6.3466 0.3940 40 1 6.2096 -5.5160 1.9760 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:21 Heat of formation + Delta-G solvation = -44.708176 kcal Electronic energy + Delta-G solvation = -20282.569930 eV Core-core repulsion = 17416.224377 eV Total energy + Delta-G solvation = -2866.345552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58898 -39.05871 -35.20622 -33.91180 -32.97847 -32.33671 -30.49545 -28.19932 -26.19505 -24.62401 -23.66996 -22.58142 -21.58609 -20.79705 -18.49338 -17.55507 -17.20783 -16.87215 -16.37237 -16.26683 -16.00125 -15.87042 -15.33981 -14.76548 -14.40188 -14.27179 -14.11676 -13.91246 -13.34168 -13.09168 -12.98756 -12.85101 -12.68312 -12.50482 -12.27729 -12.01243 -11.90053 -11.83559 -11.65321 -11.57329 -11.18647 -10.82031 -10.68230 -10.39562 -10.24776 -8.81335 -8.44636 -8.13395 -6.25719 0.99246 1.38918 1.41194 1.48942 1.71655 2.40118 3.05180 3.15377 3.42238 3.76294 3.85629 4.00130 4.06219 4.14354 4.18980 4.26100 4.42592 4.45543 4.56834 4.64073 4.69889 4.75873 4.86827 4.88522 4.96371 4.98689 4.99390 5.05018 5.14839 5.23044 5.31538 5.38044 5.53215 5.70319 5.87731 6.06634 6.22716 6.44815 6.80293 6.95697 7.45476 8.92315 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.009206 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.745677 B = 3040.886863 C = 4762.266043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.220 3.780 10 H -0.012 1.012 11 C -0.091 4.091 12 C -0.040 4.040 13 S -0.281 6.281 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.522 5.522 17 C 0.079 3.921 18 C 0.079 3.921 19 H 0.063 0.937 20 C -0.150 4.150 21 C -0.147 4.147 22 C 0.034 3.966 23 O -0.383 6.383 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -9.064 -2.482 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.190 1.190 6 H -0.212 1.212 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.113 3.887 10 H 0.006 0.994 11 C -0.131 4.131 12 C -0.187 4.187 13 S -0.055 6.055 14 C -0.222 4.222 15 C -0.068 4.068 16 N -0.246 5.246 17 C -0.049 4.049 18 C 0.021 3.979 19 H 0.081 0.919 20 C -0.188 4.188 21 C -0.184 4.184 22 C -0.042 4.042 23 O -0.303 6.303 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.503 -10.126 -1.289 13.286 hybrid contribution 0.153 2.762 -1.553 3.172 sum 8.656 -7.365 -2.842 11.715 Atomic orbital electron populations 1.70073 1.07106 1.27258 1.50631 1.25681 0.95558 1.02130 0.94672 0.85685 0.78922 0.79746 0.78100 1.20472 1.19032 1.21218 1.22128 0.94238 0.91232 1.51016 0.90486 1.18859 0.90286 0.87690 0.91912 0.99425 1.20335 0.94164 0.98139 1.00438 1.22280 1.00666 0.92139 1.03627 1.86143 1.84320 1.15257 1.19777 1.23313 0.97971 1.05507 0.95430 1.22137 0.94022 0.97029 0.93565 1.62126 1.02379 1.13046 1.47008 1.22268 0.88874 0.95269 0.98525 1.22918 0.95654 0.94096 0.85276 0.91890 1.22986 0.93436 1.02401 0.99977 1.23099 0.99442 0.98887 0.96987 1.23736 0.81516 0.96873 1.02072 1.89047 1.29926 1.77423 1.33877 0.93057 0.93914 0.93452 0.88287 0.91823 0.85442 0.91662 0.90819 0.95630 0.95019 0.91204 0.88845 0.90972 0.87864 0.91247 0.91308 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.10 12.16 21.44 0.26 -50.84 16 2 C 0.02 1.06 5.07 84.65 0.43 1.49 16 3 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.55 -29.04 7.50 25.60 0.19 -28.85 16 8 H 0.08 3.98 4.70 -2.91 -0.01 3.97 16 9 C 0.22 10.89 1.81 44.43 0.08 10.97 16 10 H -0.01 -0.65 6.07 -2.39 -0.01 -0.66 16 11 C -0.09 -4.40 4.40 28.41 0.12 -4.27 16 12 C -0.04 -1.67 6.15 69.79 0.43 -1.24 16 13 S -0.28 -10.70 21.84 -56.49 -1.23 -11.93 16 14 C -0.07 -2.59 5.60 72.19 0.40 -2.18 16 15 C 0.06 2.32 4.46 86.55 0.39 2.70 16 16 N -0.52 -22.48 4.06 -877.98 -3.57 -26.05 16 17 C 0.08 3.11 3.04 86.30 0.26 3.37 16 18 C 0.08 2.48 3.09 30.97 0.10 2.58 16 19 H 0.06 1.90 6.64 -2.39 -0.02 1.88 16 20 C -0.15 -3.61 6.64 31.58 0.21 -3.40 16 21 C -0.15 -3.04 7.15 31.90 0.23 -2.81 16 22 C 0.03 0.82 7.72 72.67 0.56 1.38 16 23 O -0.38 -13.23 11.10 -148.98 -1.65 -14.89 16 24 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 25 H 0.04 2.13 7.88 -2.39 -0.02 2.11 16 26 H 0.05 2.56 6.50 -2.39 -0.02 2.54 16 27 H 0.10 3.80 8.14 -2.38 -0.02 3.78 16 28 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.13 3.58 8.14 -2.50 -0.02 3.56 16 30 H 0.06 2.48 7.03 -2.51 -0.02 2.47 16 31 H 0.07 2.55 6.95 -2.39 -0.02 2.53 16 32 H 0.03 0.92 7.89 -2.39 -0.02 0.90 16 33 H 0.03 1.29 7.82 -2.39 -0.02 1.27 16 34 H 0.07 3.09 5.95 -2.38 -0.01 3.08 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.85 7.70 -2.39 -0.02 1.83 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -60.60 311.24 0.25 -60.35 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.01 Total: 19.00 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.40 Total: -20.26 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -3.31 Total: -76.89 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.65 Total: -14.89 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -1.23 Total: -11.93 kcal Total: -60.60 0.25 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.641 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds