Wall clock time and date at job start Mon Mar 30 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99880 * 2 1 4 4 H 1.48498 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47326 * 300.00229 * 3 2 1 6 6 H 1.48499 * 109.46831 * 60.00292 * 3 2 1 7 7 C 1.37877 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99558 * 359.97438 * 7 2 1 10 10 H 1.08991 * 108.79144 * 304.85092 * 9 7 2 11 11 C 1.46576 * 108.89214 * 63.40820 * 9 7 2 12 12 C 1.54355 * 111.47655 * 181.56032 * 11 9 7 13 13 O 1.40310 * 108.92430 * 283.01950 * 12 11 9 14 14 C 1.44246 * 117.15653 * 93.11034 * 13 12 11 15 15 C 1.53842 * 112.83339 * 317.92225 * 14 13 12 16 16 N 1.44352 * 112.12349 * 318.50002 * 15 14 13 17 17 C 1.46899 * 111.00171 * 215.88632 * 16 15 14 18 18 C 1.53004 * 109.47260 * 315.60440 * 17 16 15 19 19 H 1.08998 * 108.82447 * 54.55805 * 18 17 16 20 20 C 1.52329 * 108.87127 * 173.09106 * 18 17 16 21 21 C 1.54257 * 112.59058 * 120.81876 * 20 18 17 22 22 S 1.83962 * 102.57884 * 24.53004 * 21 20 18 23 23 C 1.54260 * 108.86708 * 296.16706 * 18 17 16 24 24 H 0.97002 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.08202 * 302.07289 * 11 9 7 26 26 H 1.08996 * 109.08327 * 61.04387 * 11 9 7 27 27 H 1.08999 * 109.56093 * 42.85198 * 12 11 9 28 28 H 1.08998 * 109.56365 * 163.07540 * 12 11 9 29 29 H 1.08996 * 108.80809 * 78.78201 * 14 13 12 30 30 H 1.08996 * 108.81009 * 197.06008 * 14 13 12 31 31 H 1.09004 * 108.94901 * 197.82068 * 15 14 13 32 32 H 1.08997 * 108.95439 * 79.18121 * 15 14 13 33 33 H 1.09002 * 109.47147 * 75.60193 * 17 16 15 34 34 H 1.09000 * 109.47609 * 195.60432 * 17 16 15 35 35 H 1.08998 * 108.86978 * 241.63954 * 20 18 17 36 36 H 1.08999 * 108.86808 * 0.14021 * 20 18 17 37 37 H 1.08995 * 110.78570 * 142.79830 * 21 20 18 38 38 H 1.09003 * 110.78433 * 266.25889 * 21 20 18 39 39 H 1.08995 * 110.78565 * 332.92303 * 23 18 17 40 40 H 1.09006 * 110.78428 * 96.37779 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5652 -2.5085 0.8465 11 6 0.4757 -2.5995 -1.2404 12 6 -0.3524 -3.9013 -1.2852 13 8 0.4989 -4.9716 -1.5990 14 6 1.0699 -5.7041 -0.4954 15 6 1.5468 -4.7889 0.6456 16 7 2.2156 -3.6086 0.1523 17 6 3.3247 -3.2240 1.0354 18 6 2.8689 -3.3097 2.4935 19 1 2.4745 -4.3084 2.6806 20 6 4.0709 -3.0769 3.3999 21 6 3.8806 -1.8665 4.3372 22 16 2.0495 -1.7357 4.4559 23 6 1.7436 -2.2804 2.7257 24 1 -0.4850 0.8401 0.0004 25 1 -0.1986 -1.7458 -1.3090 26 1 1.1583 -2.5820 -2.0900 27 1 -0.8131 -4.0745 -0.3127 28 1 -1.1280 -3.8145 -2.0462 29 1 0.3199 -6.3915 -0.1043 30 1 1.9185 -6.2831 -0.8594 31 1 2.2348 -5.3457 1.2819 32 1 0.6849 -4.4852 1.2396 33 1 4.1658 -3.8991 0.8775 34 1 3.6313 -2.2026 0.8101 35 1 4.2343 -3.9688 4.0047 36 1 4.9514 -2.9056 2.7807 37 1 4.3186 -2.0626 5.3158 38 1 4.3051 -0.9649 3.8956 39 1 1.8367 -1.4430 2.0342 40 1 0.7644 -2.7509 2.6356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260288869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:36 Heat of formation + Delta-G solvation = -20.755974 kcal Electronic energy + Delta-G solvation = -20868.675569 eV Core-core repulsion = 18003.368662 eV Total energy + Delta-G solvation = -2865.306907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47423 -36.99795 -34.61470 -33.25648 -31.04426 -29.56594 -27.87309 -27.04746 -25.43723 -23.55106 -22.88275 -20.66614 -19.58010 -18.82286 -16.89702 -16.36536 -15.74505 -15.56363 -15.12868 -14.68835 -14.49393 -14.03758 -13.63544 -13.35175 -13.10011 -12.77630 -12.33704 -12.28019 -11.64067 -11.48548 -11.34744 -11.18344 -11.08119 -10.96703 -10.76839 -10.72880 -10.52062 -10.24484 -9.92261 -9.65884 -9.59342 -9.27591 -9.00357 -8.63564 -8.34048 -7.24108 -7.17709 -6.19935 -4.24298 2.40571 2.90739 3.21684 3.31250 3.31760 4.26876 4.45887 4.89351 4.94261 5.03648 5.11909 5.28080 5.47187 5.51952 5.58014 5.72988 5.79219 5.87751 5.95619 6.02404 6.06812 6.10623 6.17114 6.27890 6.35331 6.40921 6.41310 6.48009 6.75622 6.95364 7.05848 7.33231 7.40228 7.64330 7.72203 8.07161 8.14346 8.24934 8.47870 8.82911 9.39016 10.85286 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.010800 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.083417 B = 2592.067439 C = 4030.553712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.205 3.795 10 H 0.015 0.985 11 C -0.130 4.130 12 C 0.065 3.935 13 O -0.387 6.387 14 C 0.077 3.923 15 C 0.023 3.977 16 N -0.524 5.524 17 C 0.055 3.945 18 C -0.124 4.124 19 H 0.069 0.931 20 C -0.114 4.114 21 C -0.059 4.059 22 S -0.353 6.353 23 C -0.056 4.056 24 H 0.264 0.736 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 -6.723 4.023 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.100 3.900 10 H 0.032 0.968 11 C -0.168 4.168 12 C -0.012 4.012 13 O -0.306 6.306 14 C 0.000 4.000 15 C -0.107 4.107 16 N -0.247 5.247 17 C -0.074 4.074 18 C -0.146 4.146 19 H 0.087 0.913 20 C -0.153 4.153 21 C -0.207 4.207 22 S -0.126 6.126 23 C -0.202 4.202 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.170 0.830 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.867 -6.410 4.296 8.631 hybrid contribution 0.608 0.754 0.331 1.024 sum 4.475 -5.656 4.627 8.569 Atomic orbital electron populations 1.69858 1.05866 1.26953 1.49223 1.24928 0.94887 0.99144 0.94722 0.86576 0.80216 0.83788 0.77859 1.19588 1.20848 1.20727 1.21418 0.93437 0.89940 1.51063 0.90879 1.18534 0.89825 0.87322 0.94347 0.96763 1.21290 0.99488 0.96191 0.99847 1.22539 0.92169 0.87932 0.98583 1.87323 1.64491 1.46458 1.32342 1.22890 0.96365 0.92615 0.88122 1.22443 0.97829 0.94477 0.95949 1.61579 1.11880 1.04903 1.46357 1.22727 0.93540 1.04004 0.87143 1.22446 0.94393 0.99382 0.98337 0.91319 1.21977 0.99165 0.97159 0.97041 1.23998 0.93372 1.01089 1.02222 1.87767 1.08969 1.91431 1.24481 1.25261 0.99796 1.04040 0.91143 0.92591 0.88164 0.92869 0.94894 0.91532 0.94537 0.90372 0.91657 0.95012 0.92930 0.87149 0.91681 0.90826 0.88839 0.89613 0.82952 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.98 11.47 55.43 0.64 -22.35 16 2 C 0.07 1.66 4.99 -17.82 -0.09 1.58 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -12.50 5.20 -34.44 -0.18 -12.68 16 8 H 0.07 1.76 5.29 -52.49 -0.28 1.48 16 9 C 0.21 4.59 0.80 -71.43 -0.06 4.53 16 10 H 0.02 0.36 4.76 -51.93 -0.25 0.12 16 11 C -0.13 -2.96 4.85 -29.09 -0.14 -3.10 16 12 C 0.06 1.29 6.39 37.87 0.24 1.53 16 13 O -0.39 -7.64 10.27 -33.66 -0.35 -7.98 16 14 C 0.08 1.28 7.02 37.60 0.26 1.55 16 15 C 0.02 0.39 3.72 -4.75 -0.02 0.38 16 16 N -0.52 -10.30 4.55 -232.57 -1.06 -11.35 16 17 C 0.05 0.97 4.43 -3.82 -0.02 0.95 16 18 C -0.12 -2.02 2.28 -90.30 -0.21 -2.23 16 19 H 0.07 1.10 5.88 -51.93 -0.31 0.79 16 20 C -0.11 -1.57 5.98 -26.42 -0.16 -1.73 16 21 C -0.06 -0.85 7.46 37.82 0.28 -0.57 16 22 S -0.35 -6.50 23.27 -107.50 -2.50 -9.01 16 23 C -0.06 -1.09 4.84 37.82 0.18 -0.91 16 24 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 25 H 0.10 2.50 6.05 -51.93 -0.31 2.19 16 26 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.99 6.30 -51.93 -0.33 0.66 16 32 H 0.03 0.59 6.05 -51.93 -0.31 0.27 16 33 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.11 2.18 4.60 -51.93 -0.24 1.94 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.15 3.44 4.20 -51.93 -0.22 3.22 16 40 H 0.09 1.82 6.41 -51.93 -0.33 1.49 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -25.88 295.93 -9.57 -35.45 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.85 Total: 6.54 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.11 Total: -10.69 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.42 Total: -33.70 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.35 Total: -7.98 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -2.50 Total: -9.01 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.88 -9.57 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260288869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.699 kcal (2) G-P(sol) polarization free energy of solvation -25.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds