Wall clock time and date at job start Mon Mar 30 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48502 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47069 * 299.99428 * 3 2 1 6 6 H 1.48492 * 109.47494 * 60.00049 * 3 2 1 7 7 C 1.37878 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99907 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.07331 * 55.19257 * 9 7 2 11 11 C 1.54398 * 109.08793 * 296.19936 * 9 7 2 12 12 C 1.50722 * 109.13528 * 164.06078 * 11 9 7 13 13 O 1.44231 * 112.85218 * 91.52267 * 12 11 9 14 14 C 1.43938 * 116.11451 * 318.69294 * 13 12 11 15 15 C 1.50739 * 111.88150 * 319.24144 * 14 13 12 16 16 N 1.40460 * 109.08476 * 174.25166 * 9 7 2 17 17 C 1.46904 * 110.99539 * 308.33233 * 16 9 7 18 18 C 1.52994 * 109.47603 * 293.35653 * 17 16 9 19 19 H 1.09002 * 109.45039 * 321.31927 * 18 17 16 20 20 C 1.52938 * 109.60758 * 201.08974 * 18 17 16 21 21 C 1.53707 * 112.49211 * 209.96798 * 20 18 17 22 22 S 1.83399 * 104.96752 * 2.82391 * 21 20 18 23 23 C 1.55150 * 109.60440 * 81.54945 * 18 17 16 24 24 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52110 * 283.95549 * 11 9 7 26 26 H 1.08995 * 109.52524 * 44.16264 * 11 9 7 27 27 H 1.08991 * 108.80677 * 212.39570 * 12 11 9 28 28 H 1.09009 * 108.80487 * 330.65583 * 12 11 9 29 29 H 1.09000 * 108.99999 * 79.85544 * 14 13 12 30 30 H 1.08993 * 108.99640 * 198.70268 * 14 13 12 31 31 H 1.08999 * 109.63799 * 333.68278 * 15 14 13 32 32 H 1.08997 * 109.63251 * 213.06263 * 15 14 13 33 33 H 1.09009 * 109.46969 * 173.35534 * 17 16 9 34 34 H 1.09000 * 109.47310 * 53.35842 * 17 16 9 35 35 H 1.08996 * 108.89220 * 89.17502 * 20 18 17 36 36 H 1.08997 * 108.88521 * 330.76084 * 20 18 17 37 37 H 1.09006 * 110.34469 * 121.69211 * 21 20 18 38 38 H 1.08998 * 110.34520 * 243.84205 * 21 20 18 39 39 H 1.08997 * 111.13115 * 43.45834 * 23 18 17 40 40 H 1.09008 * 111.16936 * 279.29786 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5633 -2.5133 -0.8461 11 6 0.4412 -2.6145 1.3089 12 6 -0.5978 -3.6953 1.1536 13 8 -0.1290 -4.9892 1.5853 14 6 1.2205 -5.3291 1.2177 15 6 1.5456 -4.8958 -0.1890 16 7 2.1651 -3.5572 -0.1341 17 6 3.0555 -3.3417 -1.2825 18 6 2.2441 -3.4132 -2.5775 19 1 1.4947 -4.2003 -2.4934 20 6 3.1765 -3.7159 -3.7514 21 6 2.6743 -3.1114 -5.0723 22 16 1.1570 -2.1846 -4.6225 23 6 1.5432 -2.0519 -2.8285 24 1 -0.4850 0.8401 -0.0004 25 1 1.1112 -2.8685 2.1303 26 1 -0.0500 -1.6644 1.5185 27 1 -1.4756 -3.4258 1.7407 28 1 -0.8854 -3.7580 0.1041 29 1 1.9097 -4.8418 1.9073 30 1 1.3475 -6.4090 1.2934 31 1 0.6306 -4.8521 -0.7796 32 1 2.2420 -5.6036 -0.6385 33 1 3.8266 -4.1121 -1.2939 34 1 3.5233 -2.3606 -1.2005 35 1 3.2591 -4.7966 -3.8669 36 1 4.1641 -3.3110 -3.5309 37 1 3.4217 -2.4356 -5.4882 38 1 2.4401 -3.9014 -5.7858 39 1 2.2194 -1.2198 -2.6326 40 1 0.6325 -1.9629 -2.2361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260288872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:39 Heat of formation + Delta-G solvation = -30.888609 kcal Electronic energy + Delta-G solvation = -20749.445435 eV Core-core repulsion = 17883.699145 eV Total energy + Delta-G solvation = -2865.746291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49516 -36.89343 -34.65923 -33.08621 -30.89130 -29.88160 -27.93847 -27.05624 -25.23814 -23.52622 -22.89248 -20.37019 -19.78268 -19.11794 -16.89128 -16.34331 -15.90841 -15.56535 -15.09248 -14.80840 -14.32269 -13.95911 -13.71664 -13.50887 -12.86733 -12.64972 -12.56474 -12.04690 -11.87620 -11.57026 -11.35265 -11.29873 -11.17880 -10.99035 -10.78639 -10.65057 -10.47055 -10.12931 -10.00155 -9.91753 -9.86202 -9.44901 -8.91775 -8.74208 -8.48675 -7.36249 -7.08053 -6.14857 -4.19136 2.32578 2.88066 3.22249 3.32358 3.33533 4.29961 4.47731 4.80257 4.89611 4.94317 5.16755 5.28651 5.34634 5.53844 5.60568 5.74582 5.81010 5.87594 5.92307 5.98890 6.06775 6.08028 6.12385 6.24011 6.33649 6.41416 6.45369 6.51237 6.69002 6.77374 7.01078 7.04772 7.35193 7.55012 7.72159 7.83930 8.04423 8.27801 8.57934 8.91297 9.46878 10.91430 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.010658 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.814554 B = 2626.595371 C = 4121.930074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.213 3.787 10 H 0.010 0.990 11 C -0.139 4.139 12 C 0.064 3.936 13 O -0.410 6.410 14 C 0.069 3.931 15 C 0.026 3.974 16 N -0.539 5.539 17 C 0.078 3.922 18 C -0.123 4.123 19 H 0.074 0.926 20 C -0.119 4.119 21 C -0.064 4.064 22 S -0.351 6.351 23 C -0.028 4.028 24 H 0.262 0.738 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -7.465 -4.122 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.105 3.895 10 H 0.027 0.973 11 C -0.178 4.178 12 C -0.012 4.012 13 O -0.330 6.330 14 C -0.008 4.008 15 C -0.102 4.102 16 N -0.262 5.262 17 C -0.052 4.052 18 C -0.146 4.146 19 H 0.092 0.908 20 C -0.159 4.159 21 C -0.213 4.213 22 S -0.124 6.124 23 C -0.174 4.174 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.743 -7.035 -4.295 9.052 hybrid contribution 0.938 0.794 -0.266 1.257 sum 4.681 -6.240 -4.561 9.036 Atomic orbital electron populations 1.69897 1.05790 1.26735 1.49910 1.24888 0.94789 0.98912 0.95132 0.86622 0.80230 0.84047 0.77729 1.19711 1.20982 1.21005 1.21210 0.93146 0.89420 1.50664 0.91734 1.18568 0.90172 0.87901 0.92817 0.97261 1.22061 0.96985 0.98874 0.99850 1.22493 0.97490 0.82791 0.98379 1.88138 1.29740 1.35957 1.79178 1.22266 0.84387 0.98567 0.95541 1.22332 0.98345 0.92398 0.97148 1.59505 1.24936 1.01470 1.40294 1.22277 0.94402 1.02909 0.85614 1.22767 0.98136 0.97042 0.96612 0.90787 1.21980 1.00293 1.01135 0.92469 1.23778 0.96703 1.00746 1.00051 1.87806 1.32500 1.75422 1.16701 1.24990 1.05747 0.99249 0.87459 0.92793 0.93030 0.88032 0.91153 0.94423 0.92077 0.90733 0.94117 0.91162 0.92684 0.88526 0.91246 0.91103 0.89945 0.89363 0.88325 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.94 11.64 55.43 0.65 -22.29 16 2 C 0.07 1.62 5.21 -17.82 -0.09 1.53 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -12.04 5.75 -34.44 -0.20 -12.24 16 8 H 0.06 1.56 6.26 -52.49 -0.33 1.23 16 9 C 0.21 4.67 0.86 -71.47 -0.06 4.61 16 10 H 0.01 0.25 4.22 -51.93 -0.22 0.03 16 11 C -0.14 -3.09 4.86 -27.14 -0.13 -3.23 16 12 C 0.06 1.30 6.26 36.02 0.23 1.52 16 13 O -0.41 -7.98 10.92 -35.23 -0.38 -8.36 16 14 C 0.07 1.17 6.35 36.02 0.23 1.40 16 15 C 0.03 0.43 4.21 -4.57 -0.02 0.41 16 16 N -0.54 -10.24 4.04 -232.75 -0.94 -11.18 16 17 C 0.08 1.31 4.51 -3.83 -0.02 1.30 16 18 C -0.12 -2.00 2.26 -89.52 -0.20 -2.20 16 19 H 0.07 1.26 6.30 -51.93 -0.33 0.94 16 20 C -0.12 -1.58 5.75 -26.40 -0.15 -1.73 16 21 C -0.06 -0.88 7.38 37.52 0.28 -0.60 16 22 S -0.35 -6.29 23.23 -107.50 -2.50 -8.79 16 23 C -0.03 -0.54 5.01 38.30 0.19 -0.34 16 24 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.05 1.17 7.25 -51.93 -0.38 0.79 16 26 H 0.10 2.51 6.17 -51.93 -0.32 2.19 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.04 0.79 6.61 -51.92 -0.34 0.44 16 29 H 0.06 1.09 7.26 -51.93 -0.38 0.72 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.75 6.14 -51.93 -0.32 0.43 16 32 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.05 0.81 7.85 -51.92 -0.41 0.41 16 34 H 0.10 1.81 5.33 -51.93 -0.28 1.53 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.87 7.80 -51.93 -0.41 0.47 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 2.02 7.24 -51.93 -0.38 1.65 16 40 H 0.13 2.91 5.42 -51.92 -0.28 2.63 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -25.44 299.74 -9.64 -35.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.01 Total: 5.70 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.05 Total: -9.57 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.29 Total: -33.47 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.38 Total: -8.36 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -2.50 Total: -8.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.44 -9.64 -35.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260288872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.188 kcal (2) G-P(sol) polarization free energy of solvation -25.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds