Wall clock time and date at job start Mon Mar 30 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48502 * 109.46769 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47069 * 299.99428 * 3 2 1 6 6 H 1.48492 * 109.47494 * 60.00049 * 3 2 1 7 7 C 1.37878 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99907 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.07331 * 55.19257 * 9 7 2 11 11 C 1.54398 * 109.08793 * 296.19936 * 9 7 2 12 12 C 1.50722 * 109.13528 * 164.06078 * 11 9 7 13 13 O 1.44231 * 112.85218 * 91.52267 * 12 11 9 14 14 C 1.43938 * 116.11451 * 318.69294 * 13 12 11 15 15 C 1.50739 * 111.88150 * 319.24144 * 14 13 12 16 16 N 1.40460 * 109.08476 * 174.25166 * 9 7 2 17 17 C 1.46904 * 110.99539 * 308.33233 * 16 9 7 18 18 C 1.52994 * 109.47603 * 293.35653 * 17 16 9 19 19 H 1.09002 * 109.45039 * 321.31927 * 18 17 16 20 20 C 1.52938 * 109.60758 * 201.08974 * 18 17 16 21 21 C 1.53707 * 112.49211 * 209.96798 * 20 18 17 22 22 S 1.83399 * 104.96752 * 2.82391 * 21 20 18 23 23 C 1.55150 * 109.60440 * 81.54945 * 18 17 16 24 24 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52110 * 283.95549 * 11 9 7 26 26 H 1.08995 * 109.52524 * 44.16264 * 11 9 7 27 27 H 1.08991 * 108.80677 * 212.39570 * 12 11 9 28 28 H 1.09009 * 108.80487 * 330.65583 * 12 11 9 29 29 H 1.09000 * 108.99999 * 79.85544 * 14 13 12 30 30 H 1.08993 * 108.99640 * 198.70268 * 14 13 12 31 31 H 1.08999 * 109.63799 * 333.68278 * 15 14 13 32 32 H 1.08997 * 109.63251 * 213.06263 * 15 14 13 33 33 H 1.09009 * 109.46969 * 173.35534 * 17 16 9 34 34 H 1.09000 * 109.47310 * 53.35842 * 17 16 9 35 35 H 1.08996 * 108.89220 * 89.17502 * 20 18 17 36 36 H 1.08997 * 108.88521 * 330.76084 * 20 18 17 37 37 H 1.09006 * 110.34469 * 121.69211 * 21 20 18 38 38 H 1.08998 * 110.34520 * 243.84205 * 21 20 18 39 39 H 1.08997 * 111.13115 * 43.45834 * 23 18 17 40 40 H 1.09008 * 111.16936 * 279.29786 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5633 -2.5133 -0.8461 11 6 0.4412 -2.6145 1.3089 12 6 -0.5978 -3.6953 1.1536 13 8 -0.1290 -4.9892 1.5853 14 6 1.2205 -5.3291 1.2177 15 6 1.5456 -4.8958 -0.1890 16 7 2.1651 -3.5572 -0.1341 17 6 3.0555 -3.3417 -1.2825 18 6 2.2441 -3.4132 -2.5775 19 1 1.4947 -4.2003 -2.4934 20 6 3.1765 -3.7159 -3.7514 21 6 2.6743 -3.1114 -5.0723 22 16 1.1570 -2.1846 -4.6225 23 6 1.5432 -2.0519 -2.8285 24 1 -0.4850 0.8401 -0.0004 25 1 1.1112 -2.8685 2.1303 26 1 -0.0500 -1.6644 1.5185 27 1 -1.4756 -3.4258 1.7407 28 1 -0.8854 -3.7580 0.1041 29 1 1.9097 -4.8418 1.9073 30 1 1.3475 -6.4090 1.2934 31 1 0.6306 -4.8521 -0.7796 32 1 2.2420 -5.6036 -0.6385 33 1 3.8266 -4.1121 -1.2939 34 1 3.5233 -2.3606 -1.2005 35 1 3.2591 -4.7966 -3.8669 36 1 4.1641 -3.3110 -3.5309 37 1 3.4217 -2.4356 -5.4882 38 1 2.4401 -3.9014 -5.7858 39 1 2.2194 -1.2198 -2.6326 40 1 0.6325 -1.9629 -2.2361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260288872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:38 Heat of formation + Delta-G solvation = -46.078047 kcal Electronic energy + Delta-G solvation = -20750.104099 eV Core-core repulsion = 17883.699145 eV Total energy + Delta-G solvation = -2866.404954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01499 -38.32845 -36.10541 -34.79909 -32.61877 -31.18453 -29.38630 -28.75472 -26.75849 -25.19739 -24.19193 -21.74680 -21.47033 -20.53279 -18.62681 -17.83019 -17.34433 -17.20214 -16.49016 -16.39857 -15.96368 -15.47686 -15.07822 -14.83374 -14.44071 -14.21738 -14.07355 -13.43528 -13.35901 -13.07121 -12.94244 -12.87954 -12.72932 -12.51524 -12.35746 -12.17857 -11.91020 -11.84229 -11.59704 -11.42939 -11.35703 -10.85559 -10.65945 -10.39220 -10.31435 -8.83334 -8.60150 -8.07550 -6.14706 1.02698 1.38534 1.44641 1.50860 1.51951 2.42893 2.98830 3.22438 3.38664 3.67380 3.81576 4.09827 4.16009 4.19854 4.24083 4.37615 4.44148 4.46401 4.55263 4.62255 4.72842 4.77477 4.81611 4.82101 4.93860 4.98220 5.05714 5.12347 5.20424 5.26221 5.32182 5.50142 5.57134 5.74709 5.84819 6.20215 6.38808 6.54052 6.91073 7.07843 7.54745 8.97731 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.010658 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.814554 B = 2626.595371 C = 4121.930074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.226 3.774 10 H -0.012 1.012 11 C -0.132 4.132 12 C 0.076 3.924 13 O -0.416 6.416 14 C 0.064 3.936 15 C 0.031 3.969 16 N -0.550 5.550 17 C 0.080 3.920 18 C -0.112 4.112 19 H 0.067 0.933 20 C -0.115 4.115 21 C -0.047 4.047 22 S -0.403 6.403 23 C -0.017 4.017 24 H 0.257 0.743 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.025 0.975 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -9.662 -4.998 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.118 3.882 10 H 0.005 0.995 11 C -0.171 4.171 12 C 0.000 4.000 13 O -0.337 6.337 14 C -0.012 4.012 15 C -0.097 4.097 16 N -0.272 5.272 17 C -0.050 4.050 18 C -0.135 4.135 19 H 0.086 0.914 20 C -0.154 4.154 21 C -0.195 4.195 22 S -0.177 6.177 23 C -0.164 4.164 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.043 0.957 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.928 -9.245 -5.172 12.139 hybrid contribution 0.308 1.429 -0.024 1.462 sum 6.236 -7.816 -5.196 11.268 Atomic orbital electron populations 1.70010 1.06841 1.26740 1.51519 1.25412 0.95224 1.01215 0.95497 0.85888 0.79737 0.81407 0.76965 1.18822 1.21694 1.21437 1.21410 0.92975 0.90380 1.48994 0.92083 1.18268 0.89954 0.88371 0.91653 0.99526 1.21900 0.97255 0.98170 0.99805 1.22248 0.97081 0.82857 0.97835 1.88128 1.31343 1.34848 1.79346 1.22517 0.82754 1.00715 0.95240 1.22383 0.98465 0.91704 0.97113 1.59450 1.24430 1.01716 1.41638 1.22289 0.94563 1.02981 0.85122 1.22677 0.98204 0.94716 0.97860 0.91434 1.21955 0.99766 1.03123 0.90586 1.23960 0.93854 1.00797 1.00840 1.87955 1.36511 1.76965 1.16240 1.24642 1.03583 1.00530 0.87683 0.93341 0.93734 0.90955 0.90567 0.95528 0.93066 0.86968 0.95708 0.87518 0.89162 0.90638 0.88208 0.89523 0.88385 0.86956 0.90510 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.37 11.64 21.45 0.25 -49.12 16 2 C 0.03 1.33 5.21 84.66 0.44 1.77 16 3 Si 0.93 41.81 29.54 68.60 2.03 43.84 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.50 -24.25 5.75 25.60 0.15 -24.10 16 8 H 0.06 2.97 6.26 -2.91 -0.02 2.96 16 9 C 0.23 10.09 0.86 45.81 0.04 10.13 16 10 H -0.01 -0.61 4.22 -2.39 -0.01 -0.62 16 11 C -0.13 -6.05 4.86 30.33 0.15 -5.90 16 12 C 0.08 3.11 6.26 71.24 0.45 3.56 16 13 O -0.42 -15.71 10.92 -148.98 -1.63 -17.34 16 14 C 0.06 2.01 6.35 71.25 0.45 2.46 16 15 C 0.03 0.96 4.21 85.43 0.36 1.32 16 16 N -0.55 -20.22 4.04 -890.29 -3.60 -23.82 16 17 C 0.08 2.52 4.51 86.30 0.39 2.91 16 18 C -0.11 -3.44 2.26 -10.08 -0.02 -3.46 16 19 H 0.07 2.18 6.30 -2.39 -0.02 2.17 16 20 C -0.12 -2.58 5.75 30.81 0.18 -2.40 16 21 C -0.05 -1.11 7.38 72.22 0.53 -0.58 16 22 S -0.40 -14.34 23.23 -56.49 -1.31 -15.65 16 23 C -0.02 -0.68 5.01 72.72 0.36 -0.31 16 24 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 25 H 0.04 2.04 7.25 -2.39 -0.02 2.02 16 26 H 0.07 3.74 6.17 -2.39 -0.01 3.72 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.03 1.14 6.61 -2.38 -0.02 1.13 16 29 H 0.05 1.73 7.26 -2.39 -0.02 1.71 16 30 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.02 0.87 6.14 -2.39 -0.01 0.86 16 32 H 0.11 2.57 7.77 -2.39 -0.02 2.55 16 33 H 0.09 2.26 7.85 -2.38 -0.02 2.24 16 34 H 0.08 2.74 5.33 -2.39 -0.01 2.73 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.72 7.80 -2.39 -0.02 1.70 16 37 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 3.26 7.24 -2.39 -0.02 3.24 16 40 H 0.09 4.19 5.42 -2.38 -0.01 4.17 16 Total: -1.00 -57.41 299.74 0.25 -57.17 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.03 Total: 19.53 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.47 Total: -14.61 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -3.35 Total: -72.94 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.63 Total: -17.34 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -14.34 SS G_CDS: -1.31 Total: -15.65 kcal Total: -57.41 0.25 -57.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260288872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.087 kcal (2) G-P(sol) polarization free energy of solvation -57.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds