Wall clock time and date at job start Mon Mar 30 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47211 * 239.99879 * 3 2 1 5 5 H 1.48501 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47232 * 119.99862 * 3 2 1 7 7 C 1.37883 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99474 * 359.97438 * 7 2 1 10 10 H 1.08991 * 108.87031 * 356.13015 * 9 7 2 11 11 C 1.46581 * 108.88626 * 114.72711 * 9 7 2 12 12 C 1.54361 * 111.40809 * 181.59274 * 11 9 7 13 13 O 1.40356 * 108.90771 * 282.93561 * 12 11 9 14 14 C 1.44247 * 117.09780 * 93.19542 * 13 12 11 15 15 C 1.53839 * 112.83442 * 317.91403 * 14 13 12 16 16 N 1.44343 * 112.11676 * 318.51054 * 15 14 13 17 17 C 1.46906 * 110.99936 * 215.89007 * 16 15 14 18 18 C 1.52996 * 109.47312 * 70.74495 * 17 16 15 19 19 H 1.09002 * 110.69681 * 300.70442 * 18 17 16 20 20 C 1.54261 * 110.78910 * 177.39316 * 18 17 16 21 21 C 1.52332 * 112.58435 * 217.19806 * 20 18 17 22 22 C 1.54260 * 112.59006 * 359.97438 * 21 20 18 23 23 S 1.83957 * 110.78808 * 64.01641 * 18 17 16 24 24 H 0.97001 * 119.99709 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.08165 * 302.06443 * 11 9 7 26 26 H 1.09001 * 109.08406 * 61.11811 * 11 9 7 27 27 H 1.09000 * 109.56373 * 42.83647 * 12 11 9 28 28 H 1.09003 * 109.56046 * 163.16704 * 12 11 9 29 29 H 1.09000 * 108.81129 * 197.05029 * 14 13 12 30 30 H 1.08998 * 108.72059 * 78.72284 * 14 13 12 31 31 H 1.08995 * 108.95521 * 197.82589 * 15 14 13 32 32 H 1.09000 * 108.94716 * 79.18348 * 15 14 13 33 33 H 1.08993 * 109.47384 * 190.74729 * 17 16 15 34 34 H 1.09006 * 109.46680 * 310.74362 * 17 16 15 35 35 H 1.08998 * 108.86206 * 338.00901 * 20 18 17 36 36 H 1.08994 * 108.87216 * 96.37507 * 20 18 17 37 37 H 1.09007 * 108.86870 * 120.81659 * 21 20 18 38 38 H 1.08996 * 108.86880 * 239.32008 * 21 20 18 39 39 H 1.09000 * 110.78730 * 142.79970 * 22 21 20 40 40 H 1.08994 * 110.78747 * 266.06460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.1837 -2.2899 0.0716 11 6 1.5156 -3.2010 -1.2577 12 6 0.7380 -4.5322 -1.3350 13 8 1.3890 -5.4863 -0.5376 14 6 0.9342 -5.6251 0.8242 15 6 0.6545 -4.2722 1.5011 16 7 1.6606 -3.2872 1.1831 17 6 1.9235 -2.4128 2.3339 18 6 2.6634 -3.2021 3.4157 19 1 2.0727 -4.0591 3.7392 20 6 3.0127 -2.2946 4.6132 21 6 4.3710 -2.6231 5.2195 22 6 5.0781 -3.7865 4.4940 23 16 4.3178 -3.7384 2.8162 24 1 -0.4850 0.8401 -0.0004 25 1 1.2160 -2.5644 -2.0901 26 1 2.5833 -3.4072 -1.3332 27 1 -0.2785 -4.3828 -0.9708 28 1 0.7099 -4.8789 -2.3681 29 1 1.6960 -6.1539 1.3970 30 1 0.0185 -6.2163 0.8286 31 1 0.6283 -4.4155 2.5812 32 1 -0.3171 -3.9052 1.1705 33 1 2.5362 -1.5690 2.0166 34 1 0.9786 -2.0453 2.7343 35 1 3.0174 -1.2570 4.2795 36 1 2.2468 -2.4121 5.3797 37 1 5.0043 -1.7374 5.1665 38 1 4.2335 -2.8951 6.2660 39 1 6.1525 -3.6116 4.4380 40 1 4.8674 -4.7352 4.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:30 Heat of formation + Delta-G solvation = -40.249828 kcal Electronic energy + Delta-G solvation = -20257.640811 eV Core-core repulsion = 17391.488587 eV Total energy + Delta-G solvation = -2866.152224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.78447 -36.45162 -35.20603 -33.12089 -31.40680 -30.38113 -27.66731 -26.60607 -25.26582 -23.39182 -22.34261 -20.39876 -19.61797 -19.30140 -16.87842 -16.39614 -15.71477 -15.46352 -15.09473 -14.58254 -14.34145 -14.08968 -13.83155 -13.51212 -13.22007 -12.68029 -12.46164 -12.39201 -11.73201 -11.46054 -11.33453 -11.11706 -11.04594 -10.91318 -10.75035 -10.58142 -10.44826 -10.28909 -10.12651 -9.77397 -9.37583 -9.21040 -9.07884 -8.66786 -8.45475 -7.18771 -6.96939 -6.11735 -4.13803 2.35819 2.89679 3.26706 3.31680 3.35841 4.34469 4.46535 4.70534 4.90488 4.95807 5.17001 5.31042 5.38350 5.46470 5.64120 5.68417 5.72490 5.79405 5.89895 5.94113 6.04493 6.12284 6.14073 6.18858 6.25260 6.31267 6.31746 6.48040 6.62996 6.86741 7.04784 7.13942 7.46238 7.75935 7.81576 8.03278 8.15501 8.34260 8.65952 9.00981 9.48930 10.95259 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.009568 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.056194 B = 2925.643833 C = 4463.010519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.189 3.811 10 H 0.044 0.956 11 C -0.117 4.117 12 C 0.065 3.935 13 O -0.384 6.384 14 C 0.080 3.920 15 C 0.021 3.979 16 N -0.522 5.522 17 C 0.088 3.912 18 C -0.030 4.030 19 H 0.080 0.920 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.093 4.093 23 S -0.241 6.241 24 H 0.263 0.737 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -6.407 8.317 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.084 3.916 10 H 0.062 0.938 11 C -0.156 4.156 12 C -0.012 4.012 13 O -0.302 6.302 14 C 0.003 3.997 15 C -0.109 4.109 16 N -0.247 5.247 17 C -0.041 4.041 18 C -0.159 4.159 19 H 0.098 0.902 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.242 4.242 23 S -0.015 6.015 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.130 0.870 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.898 -6.871 6.992 10.550 hybrid contribution -1.135 1.750 1.536 2.590 sum 2.763 -5.121 8.527 10.324 Atomic orbital electron populations 1.69888 1.05991 1.26911 1.50521 1.25004 0.94845 0.99318 0.94612 0.86662 0.79609 0.82859 0.79025 1.20012 1.21420 1.19988 1.21073 0.93486 0.89699 1.50192 0.92004 1.18558 0.97339 0.90106 0.85559 0.93848 1.21225 1.00446 0.94174 0.99716 1.22500 0.95185 0.90217 0.93324 1.87344 1.62410 1.58609 1.21855 1.22885 0.97993 0.95791 0.83038 1.22427 0.94908 0.94603 0.98927 1.61592 1.42203 1.15472 1.05432 1.21874 0.98217 0.95760 0.88207 1.24134 0.94959 0.99895 0.96950 0.90219 1.22089 0.96339 1.01474 0.96573 1.21939 0.96114 0.98306 0.99504 1.24177 1.02595 1.00536 0.96894 1.88550 1.12068 1.90610 1.10287 0.92751 0.91983 0.92152 0.94479 0.91493 0.90204 0.94720 0.92318 0.95116 0.86979 0.95073 0.90314 0.91537 0.91062 0.91741 0.88678 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 12.59 55.43 0.70 -24.10 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.26 5.70 -34.44 -0.20 -13.46 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.19 4.58 1.99 -71.43 -0.14 4.44 16 10 H 0.04 1.19 6.12 -51.93 -0.32 0.87 16 11 C -0.12 -2.65 4.92 -29.08 -0.14 -2.80 16 12 C 0.06 1.28 6.39 37.87 0.24 1.52 16 13 O -0.38 -7.75 10.28 -33.76 -0.35 -8.09 16 14 C 0.08 1.41 7.02 37.59 0.26 1.68 16 15 C 0.02 0.41 4.90 -4.75 -0.02 0.38 16 16 N -0.52 -11.23 4.06 -232.58 -0.95 -12.18 16 17 C 0.09 1.81 3.79 -3.82 -0.01 1.79 16 18 C -0.03 -0.50 3.23 -26.07 -0.08 -0.59 16 19 H 0.08 1.27 6.67 -51.93 -0.35 0.92 16 20 C -0.12 -1.74 5.93 -26.41 -0.16 -1.90 16 21 C -0.12 -1.43 6.30 -26.41 -0.17 -1.60 16 22 C -0.09 -1.19 7.47 37.82 0.28 -0.91 16 23 S -0.24 -4.24 22.54 -107.50 -2.42 -6.66 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.06 1.43 8.13 -51.93 -0.42 1.01 16 26 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.04 0.72 7.14 -51.93 -0.37 0.35 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.00 6.09 -51.93 -0.32 0.68 16 32 H 0.03 0.62 6.72 -51.93 -0.35 0.28 16 33 H 0.11 2.61 5.88 -51.93 -0.31 2.31 16 34 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.08 1.18 7.76 -51.93 -0.40 0.78 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -28.11 315.31 -10.12 -38.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.59 Total: 2.15 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.24 Total: -9.81 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.25 Total: -36.28 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.35 Total: -8.09 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.42 Total: -6.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.11 -10.12 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.025 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds