Wall clock time and date at job start Mon Mar 30 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47211 * 239.99879 * 3 2 1 5 5 H 1.48501 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47232 * 119.99862 * 3 2 1 7 7 C 1.37883 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99474 * 359.97438 * 7 2 1 10 10 H 1.08991 * 108.87031 * 356.13015 * 9 7 2 11 11 C 1.46581 * 108.88626 * 114.72711 * 9 7 2 12 12 C 1.54361 * 111.40809 * 181.59274 * 11 9 7 13 13 O 1.40356 * 108.90771 * 282.93561 * 12 11 9 14 14 C 1.44247 * 117.09780 * 93.19542 * 13 12 11 15 15 C 1.53839 * 112.83442 * 317.91403 * 14 13 12 16 16 N 1.44343 * 112.11676 * 318.51054 * 15 14 13 17 17 C 1.46906 * 110.99936 * 215.89007 * 16 15 14 18 18 C 1.52996 * 109.47312 * 70.74495 * 17 16 15 19 19 H 1.09002 * 110.69681 * 300.70442 * 18 17 16 20 20 C 1.54261 * 110.78910 * 177.39316 * 18 17 16 21 21 C 1.52332 * 112.58435 * 217.19806 * 20 18 17 22 22 C 1.54260 * 112.59006 * 359.97438 * 21 20 18 23 23 S 1.83957 * 110.78808 * 64.01641 * 18 17 16 24 24 H 0.97001 * 119.99709 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.08165 * 302.06443 * 11 9 7 26 26 H 1.09001 * 109.08406 * 61.11811 * 11 9 7 27 27 H 1.09000 * 109.56373 * 42.83647 * 12 11 9 28 28 H 1.09003 * 109.56046 * 163.16704 * 12 11 9 29 29 H 1.09000 * 108.81129 * 197.05029 * 14 13 12 30 30 H 1.08998 * 108.72059 * 78.72284 * 14 13 12 31 31 H 1.08995 * 108.95521 * 197.82589 * 15 14 13 32 32 H 1.09000 * 108.94716 * 79.18348 * 15 14 13 33 33 H 1.08993 * 109.47384 * 190.74729 * 17 16 15 34 34 H 1.09006 * 109.46680 * 310.74362 * 17 16 15 35 35 H 1.08998 * 108.86206 * 338.00901 * 20 18 17 36 36 H 1.08994 * 108.87216 * 96.37507 * 20 18 17 37 37 H 1.09007 * 108.86870 * 120.81659 * 21 20 18 38 38 H 1.08996 * 108.86880 * 239.32008 * 21 20 18 39 39 H 1.09000 * 110.78730 * 142.79970 * 22 21 20 40 40 H 1.08994 * 110.78747 * 266.06460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.1837 -2.2899 0.0716 11 6 1.5156 -3.2010 -1.2577 12 6 0.7380 -4.5322 -1.3350 13 8 1.3890 -5.4863 -0.5376 14 6 0.9342 -5.6251 0.8242 15 6 0.6545 -4.2722 1.5011 16 7 1.6606 -3.2872 1.1831 17 6 1.9235 -2.4128 2.3339 18 6 2.6634 -3.2021 3.4157 19 1 2.0727 -4.0591 3.7392 20 6 3.0127 -2.2946 4.6132 21 6 4.3710 -2.6231 5.2195 22 6 5.0781 -3.7865 4.4940 23 16 4.3178 -3.7384 2.8162 24 1 -0.4850 0.8401 -0.0004 25 1 1.2160 -2.5644 -2.0901 26 1 2.5833 -3.4072 -1.3332 27 1 -0.2785 -4.3828 -0.9708 28 1 0.7099 -4.8789 -2.3681 29 1 1.6960 -6.1539 1.3970 30 1 0.0185 -6.2163 0.8286 31 1 0.6283 -4.4155 2.5812 32 1 -0.3171 -3.9052 1.1705 33 1 2.5362 -1.5690 2.0166 34 1 0.9786 -2.0453 2.7343 35 1 3.0174 -1.2570 4.2795 36 1 2.2468 -2.4121 5.3797 37 1 5.0043 -1.7374 5.1665 38 1 4.2335 -2.8951 6.2660 39 1 6.1525 -3.6116 4.4380 40 1 4.8674 -4.7352 4.9876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:30 Heat of formation + Delta-G solvation = -57.331463 kcal Electronic energy + Delta-G solvation = -20258.381526 eV Core-core repulsion = 17391.488587 eV Total energy + Delta-G solvation = -2866.892939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45039 -37.89023 -36.60944 -34.92796 -33.27814 -31.74147 -29.18586 -28.39148 -26.58144 -25.21213 -23.76780 -21.90370 -21.09241 -20.90281 -18.80551 -17.76827 -17.27960 -17.19735 -16.52172 -16.17393 -15.88055 -15.64650 -15.22057 -14.90359 -14.71833 -14.38456 -14.20336 -13.69435 -13.27690 -12.97794 -12.85348 -12.68917 -12.58936 -12.55729 -12.27498 -12.20744 -12.06909 -11.85423 -11.63693 -11.20438 -11.13495 -10.98769 -10.66526 -10.50591 -10.17279 -8.85617 -8.44333 -8.17716 -6.24870 1.12146 1.37989 1.38989 1.47110 1.68287 2.38081 2.89402 3.08803 3.43571 3.75738 3.88052 4.03446 4.12463 4.17376 4.25718 4.33701 4.41980 4.46053 4.52439 4.60145 4.63027 4.66443 4.75686 4.83508 4.86054 4.98872 5.07689 5.09248 5.11507 5.20645 5.27939 5.35818 5.56191 5.67875 5.84063 6.17772 6.42590 6.61547 6.85749 6.94937 7.40233 8.88643 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.009568 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.056194 B = 2925.643833 C = 4463.010519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.044 0.956 9 C 0.195 3.805 10 H 0.010 0.990 11 C -0.114 4.114 12 C 0.076 3.924 13 O -0.397 6.397 14 C 0.079 3.921 15 C 0.021 3.979 16 N -0.524 5.524 17 C 0.097 3.903 18 C -0.014 4.014 19 H 0.093 0.907 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.069 4.069 23 S -0.324 6.324 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 -7.499 10.245 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.089 3.911 10 H 0.028 0.972 11 C -0.153 4.153 12 C -0.001 4.001 13 O -0.316 6.316 14 C 0.003 3.997 15 C -0.109 4.109 16 N -0.248 5.248 17 C -0.032 4.032 18 C -0.143 4.143 19 H 0.111 0.889 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.217 4.217 23 S -0.098 6.098 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.575 -7.975 8.931 12.817 hybrid contribution -1.309 2.048 0.991 2.625 sum 3.265 -5.927 9.922 12.010 Atomic orbital electron populations 1.69999 1.07128 1.27459 1.51769 1.25607 0.95490 1.02064 0.94462 0.85789 0.78548 0.79447 0.79060 1.19907 1.20901 1.19373 1.21155 0.92651 0.91143 1.49832 0.93747 1.18393 0.94930 0.90213 0.87529 0.97175 1.21130 0.99785 0.95883 0.98475 1.22376 0.94337 0.88531 0.94857 1.87322 1.63058 1.58235 1.23015 1.23047 0.99815 0.95044 0.81820 1.22504 0.93237 0.94579 1.00570 1.61582 1.42823 1.15391 1.05013 1.21698 0.97153 0.95435 0.88954 1.23961 0.93887 1.00145 0.96297 0.88915 1.22126 0.98608 0.99699 0.95964 1.21922 0.94553 0.98187 1.00844 1.24278 1.02943 1.01957 0.92514 1.88786 1.14128 1.90781 1.16089 0.92819 0.93229 0.93828 0.94383 0.88905 0.89036 0.91694 0.90078 0.96775 0.90402 0.96787 0.92123 0.89210 0.90782 0.88436 0.87228 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 12.59 21.45 0.27 -52.55 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.51 -27.82 5.70 25.60 0.15 -27.67 16 8 H 0.04 2.54 7.74 -2.91 -0.02 2.51 16 9 C 0.19 9.82 1.99 42.01 0.08 9.91 16 10 H 0.01 0.59 6.12 -2.39 -0.01 0.58 16 11 C -0.11 -5.32 4.92 29.07 0.14 -5.18 16 12 C 0.08 2.96 6.39 72.44 0.46 3.42 16 13 O -0.40 -15.54 10.28 -143.71 -1.48 -17.02 16 14 C 0.08 2.65 7.02 72.26 0.51 3.15 16 15 C 0.02 0.78 4.90 87.06 0.43 1.20 16 16 N -0.52 -22.95 4.06 -889.76 -3.62 -26.56 16 17 C 0.10 4.05 3.79 86.30 0.33 4.38 16 18 C -0.01 -0.45 3.23 31.02 0.10 -0.35 16 19 H 0.09 2.75 6.67 -2.39 -0.02 2.74 16 20 C -0.12 -3.22 5.93 30.80 0.18 -3.03 16 21 C -0.12 -2.37 6.30 30.80 0.19 -2.17 16 22 C -0.07 -1.53 7.47 72.41 0.54 -0.99 16 23 S -0.32 -11.12 22.54 -56.49 -1.27 -12.39 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 26 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.04 1.47 7.14 -2.39 -0.02 1.45 16 28 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.63 6.09 -2.39 -0.01 2.61 16 32 H 0.01 0.58 6.72 -2.39 -0.02 0.56 16 33 H 0.08 3.80 5.88 -2.39 -0.01 3.79 16 34 H 0.01 0.62 8.06 -2.38 -0.02 0.60 16 35 H 0.06 1.79 7.76 -2.39 -0.02 1.77 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -63.07 315.31 0.51 -62.56 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.00 Total: 16.02 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.58 Total: -15.60 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.35 Total: -79.12 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.48 Total: -17.02 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -11.12 SS G_CDS: -1.27 Total: -12.39 kcal Total: -63.07 0.51 -62.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.231 kcal (2) G-P(sol) polarization free energy of solvation -63.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds