Wall clock time and date at job start Mon Mar 30 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48509 * 109.47306 * 270.00698 * 3 2 1 5 5 H 1.48501 * 109.47301 * 30.00484 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00392 * 3 2 1 7 7 C 1.37881 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00059 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.07688 * 55.28780 * 9 7 2 11 11 C 1.54396 * 109.08373 * 296.29549 * 9 7 2 12 12 C 1.50729 * 109.13236 * 164.06147 * 11 9 7 13 13 O 1.44232 * 112.84831 * 91.52287 * 12 11 9 14 14 C 1.43932 * 116.11599 * 318.69335 * 13 12 11 15 15 C 1.50737 * 111.88539 * 319.23946 * 14 13 12 16 16 N 1.40463 * 109.08165 * 174.34643 * 9 7 2 17 17 C 1.46900 * 110.99953 * 308.33188 * 16 9 7 18 18 C 1.53008 * 109.46858 * 163.82354 * 17 16 9 19 19 H 1.08996 * 110.44661 * 60.92985 * 18 17 16 20 20 C 1.54271 * 110.39721 * 183.31994 * 18 17 16 21 21 C 1.54393 * 109.00133 * 146.75735 * 20 18 17 22 22 C 1.55135 * 106.63138 * 312.80523 * 21 20 18 23 23 S 1.83102 * 110.39842 * 298.54663 * 18 17 16 24 24 H 0.97002 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.52287 * 283.95639 * 11 9 7 26 26 H 1.08992 * 109.52821 * 44.09333 * 11 9 7 27 27 H 1.08999 * 108.80418 * 212.39386 * 12 11 9 28 28 H 1.08995 * 108.80372 * 330.65839 * 12 11 9 29 29 H 1.08999 * 109.00374 * 79.86088 * 14 13 12 30 30 H 1.09001 * 108.99579 * 198.62050 * 14 13 12 31 31 H 1.09007 * 109.63838 * 333.69091 * 15 14 13 32 32 H 1.08992 * 109.64007 * 213.07045 * 15 14 13 33 33 H 1.08996 * 109.46871 * 43.82519 * 17 16 9 34 34 H 1.08998 * 109.47212 * 283.82105 * 17 16 9 35 35 H 1.09000 * 109.60573 * 266.66107 * 20 18 17 36 36 H 1.09001 * 109.61103 * 26.82683 * 20 18 17 37 37 H 1.09000 * 110.22650 * 193.46342 * 21 20 18 38 38 H 1.08997 * 109.98226 * 72.01720 * 21 20 18 39 39 H 1.09000 * 110.85838 * 283.79049 * 22 21 20 40 40 H 1.09002 * 110.85152 * 160.35285 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8681 -0.6077 0.8457 11 6 4.0158 -0.5474 -1.3093 12 6 5.4714 -0.1884 -1.1537 13 8 6.3572 -1.2404 -1.5883 14 6 5.9770 -2.5799 -1.2237 15 6 5.4398 -2.6482 0.1830 16 7 3.9707 -2.5151 0.1292 17 6 3.3394 -3.1812 1.2762 18 6 3.5360 -4.6941 1.1590 19 1 4.5974 -4.9416 1.1629 20 6 2.8098 -5.4214 2.3096 21 6 2.2938 -6.7833 1.7970 22 6 1.5927 -6.5104 0.4403 23 16 2.7390 -5.3251 -0.3639 24 1 -0.4850 0.8401 0.0004 25 1 3.9004 -1.2527 -2.1324 26 1 3.4376 0.3528 -1.5171 27 1 5.6766 0.7080 -1.7389 28 1 5.6699 0.0268 -0.1038 29 1 5.2101 -2.9314 -1.9139 30 1 6.8483 -3.2300 -1.3028 31 1 5.8597 -1.8352 0.7755 32 1 5.7048 -3.6062 0.6302 33 1 2.2736 -2.9531 1.2874 34 1 3.7968 -2.8259 2.1996 35 1 3.5023 -5.5810 3.1361 36 1 1.9693 -4.8174 2.6514 37 1 1.5821 -7.2074 2.5053 38 1 3.1295 -7.4681 1.6533 39 1 0.6125 -6.0590 0.5939 40 1 1.5089 -7.4266 -0.1442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:34 Heat of formation + Delta-G solvation = -28.278409 kcal Electronic energy + Delta-G solvation = -20289.332394 eV Core-core repulsion = 17423.699290 eV Total energy + Delta-G solvation = -2865.633104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27832 -36.60894 -35.34549 -33.13280 -31.50650 -30.46527 -28.29665 -26.88390 -25.21978 -23.18727 -22.28469 -20.77071 -20.00348 -19.57823 -17.20381 -16.33458 -16.22052 -15.69461 -15.36041 -14.61263 -14.42438 -14.14580 -14.05844 -13.61124 -13.16865 -12.66113 -12.54537 -12.40276 -12.00745 -11.83286 -11.67909 -11.40278 -11.36009 -11.15359 -10.87063 -10.75009 -10.52077 -10.35965 -10.14804 -9.93381 -9.60640 -9.33561 -9.04234 -8.89099 -8.57101 -7.28127 -7.03776 -6.09227 -4.07624 2.26510 2.89372 3.22259 3.33218 3.34242 4.29194 4.36776 4.49712 4.79423 4.89388 5.06278 5.16758 5.21640 5.37552 5.46159 5.59192 5.62446 5.69283 5.72968 5.78288 5.82870 5.87059 5.89213 5.95486 6.10461 6.13177 6.20208 6.23741 6.38903 6.50913 6.62270 6.79099 6.90525 7.22254 7.50534 7.67529 8.03633 8.15637 8.70877 9.01525 9.53250 11.02554 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.008050 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.935981 B = 3477.353462 C = 4563.468416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.092 0.908 9 C 0.199 3.801 10 H -0.012 1.012 11 C -0.154 4.154 12 C 0.059 3.941 13 O -0.403 6.403 14 C 0.068 3.932 15 C 0.021 3.979 16 N -0.525 5.525 17 C 0.076 3.924 18 C -0.039 4.039 19 H 0.087 0.913 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.095 4.095 23 S -0.238 6.238 24 H 0.263 0.737 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -10.002 3.794 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.110 0.890 9 C 0.090 3.910 10 H 0.005 0.995 11 C -0.193 4.193 12 C -0.017 4.017 13 O -0.323 6.323 14 C -0.009 4.009 15 C -0.107 4.107 16 N -0.249 5.249 17 C -0.053 4.053 18 C -0.169 4.169 19 H 0.105 0.895 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.243 4.243 23 S -0.012 6.012 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.648 -9.772 2.136 12.591 hybrid contribution 0.253 1.170 1.999 2.330 sum 7.901 -8.602 4.134 12.390 Atomic orbital electron populations 1.69878 1.06053 1.26802 1.50584 1.24935 0.94668 0.98613 0.94739 0.87075 0.80340 0.84295 0.78138 1.20253 1.22155 1.19072 1.21127 0.87898 0.94911 1.50403 0.88990 1.18675 0.96651 0.84442 0.91220 0.99464 1.22432 0.93181 1.01693 1.01953 1.22485 0.91238 0.89364 0.98643 1.88151 1.49842 1.15202 1.79091 1.22328 0.99511 0.83362 0.95707 1.22435 0.90057 1.00848 0.97316 1.58973 1.03788 1.20123 1.41977 1.22213 1.03576 0.88942 0.90530 1.23927 1.00733 0.99000 0.93207 0.89478 1.22474 1.00823 0.95596 0.97776 1.22602 1.00106 0.97590 0.95882 1.24269 1.01184 1.00829 0.98040 1.87937 1.48453 1.50109 1.14687 0.92654 0.90279 0.91222 0.90843 0.94148 0.91482 0.90375 0.94385 0.90728 0.86665 0.95556 0.90660 0.90250 0.90490 0.90938 0.89406 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 2.02 5.44 -17.82 -0.10 1.92 16 3 Si 0.87 21.25 24.60 -169.99 -4.18 17.07 16 4 H -0.28 -6.58 6.80 56.52 0.38 -6.20 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.24 6.41 56.52 0.36 -5.88 16 7 C -0.51 -13.52 7.94 -34.44 -0.27 -13.80 16 8 H 0.09 2.69 6.62 -52.48 -0.35 2.34 16 9 C 0.20 4.58 1.10 -71.47 -0.08 4.50 16 10 H -0.01 -0.29 6.33 -51.93 -0.33 -0.62 16 11 C -0.15 -3.40 4.33 -27.14 -0.12 -3.52 16 12 C 0.06 1.14 6.26 36.02 0.23 1.37 16 13 O -0.40 -7.63 10.92 -35.23 -0.38 -8.02 16 14 C 0.07 1.15 6.35 36.02 0.23 1.38 16 15 C 0.02 0.36 5.16 -4.57 -0.02 0.34 16 16 N -0.53 -10.46 3.49 -232.75 -0.81 -11.28 16 17 C 0.08 1.40 4.06 -3.82 -0.02 1.38 16 18 C -0.04 -0.59 3.17 -26.06 -0.08 -0.67 16 19 H 0.09 1.22 6.43 -51.93 -0.33 0.89 16 20 C -0.13 -1.56 5.95 -25.34 -0.15 -1.71 16 21 C -0.12 -1.33 6.51 -24.87 -0.16 -1.49 16 22 C -0.09 -1.22 7.36 38.29 0.28 -0.94 16 23 S -0.24 -3.99 22.38 -107.50 -2.41 -6.40 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.08 1.79 7.25 -51.93 -0.38 1.41 16 26 H 0.07 1.62 3.97 -51.93 -0.21 1.41 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.04 0.79 6.61 -51.93 -0.34 0.45 16 29 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.68 6.85 -51.93 -0.36 0.32 16 32 H 0.07 1.10 6.00 -51.93 -0.31 0.79 16 33 H 0.12 2.49 5.42 -51.93 -0.28 2.21 16 34 H 0.03 0.47 8.11 -51.93 -0.42 0.04 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.05 7.83 -51.93 -0.41 0.64 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -29.30 303.25 -8.94 -38.25 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.24 Total: 2.81 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.26 Total: -11.23 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.04 Total: -37.05 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.38 Total: -8.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.18 Total: 17.07 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -2.41 Total: -6.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.30 -8.94 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.969 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds