Wall clock time and date at job start Mon Mar 30 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48509 * 109.47306 * 270.00698 * 3 2 1 5 5 H 1.48501 * 109.47301 * 30.00484 * 3 2 1 6 6 H 1.48500 * 109.47415 * 150.00392 * 3 2 1 7 7 C 1.37881 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00059 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.07688 * 55.28780 * 9 7 2 11 11 C 1.54396 * 109.08373 * 296.29549 * 9 7 2 12 12 C 1.50729 * 109.13236 * 164.06147 * 11 9 7 13 13 O 1.44232 * 112.84831 * 91.52287 * 12 11 9 14 14 C 1.43932 * 116.11599 * 318.69335 * 13 12 11 15 15 C 1.50737 * 111.88539 * 319.23946 * 14 13 12 16 16 N 1.40463 * 109.08165 * 174.34643 * 9 7 2 17 17 C 1.46900 * 110.99953 * 308.33188 * 16 9 7 18 18 C 1.53008 * 109.46858 * 163.82354 * 17 16 9 19 19 H 1.08996 * 110.44661 * 60.92985 * 18 17 16 20 20 C 1.54271 * 110.39721 * 183.31994 * 18 17 16 21 21 C 1.54393 * 109.00133 * 146.75735 * 20 18 17 22 22 C 1.55135 * 106.63138 * 312.80523 * 21 20 18 23 23 S 1.83102 * 110.39842 * 298.54663 * 18 17 16 24 24 H 0.97002 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.52287 * 283.95639 * 11 9 7 26 26 H 1.08992 * 109.52821 * 44.09333 * 11 9 7 27 27 H 1.08999 * 108.80418 * 212.39386 * 12 11 9 28 28 H 1.08995 * 108.80372 * 330.65839 * 12 11 9 29 29 H 1.08999 * 109.00374 * 79.86088 * 14 13 12 30 30 H 1.09001 * 108.99579 * 198.62050 * 14 13 12 31 31 H 1.09007 * 109.63838 * 333.69091 * 15 14 13 32 32 H 1.08992 * 109.64007 * 213.07045 * 15 14 13 33 33 H 1.08996 * 109.46871 * 43.82519 * 17 16 9 34 34 H 1.08998 * 109.47212 * 283.82105 * 17 16 9 35 35 H 1.09000 * 109.60573 * 266.66107 * 20 18 17 36 36 H 1.09001 * 109.61103 * 26.82683 * 20 18 17 37 37 H 1.09000 * 110.22650 * 193.46342 * 21 20 18 38 38 H 1.08997 * 109.98226 * 72.01720 * 21 20 18 39 39 H 1.09000 * 110.85838 * 283.79049 * 22 21 20 40 40 H 1.09002 * 110.85152 * 160.35285 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8681 -0.6077 0.8457 11 6 4.0158 -0.5474 -1.3093 12 6 5.4714 -0.1884 -1.1537 13 8 6.3572 -1.2404 -1.5883 14 6 5.9770 -2.5799 -1.2237 15 6 5.4398 -2.6482 0.1830 16 7 3.9707 -2.5151 0.1292 17 6 3.3394 -3.1812 1.2762 18 6 3.5360 -4.6941 1.1590 19 1 4.5974 -4.9416 1.1629 20 6 2.8098 -5.4214 2.3096 21 6 2.2938 -6.7833 1.7970 22 6 1.5927 -6.5104 0.4403 23 16 2.7390 -5.3251 -0.3639 24 1 -0.4850 0.8401 0.0004 25 1 3.9004 -1.2527 -2.1324 26 1 3.4376 0.3528 -1.5171 27 1 5.6766 0.7080 -1.7389 28 1 5.6699 0.0268 -0.1038 29 1 5.2101 -2.9314 -1.9139 30 1 6.8483 -3.2300 -1.3028 31 1 5.8597 -1.8352 0.7755 32 1 5.7048 -3.6062 0.6302 33 1 2.2736 -2.9531 1.2874 34 1 3.7968 -2.8259 2.1996 35 1 3.5023 -5.5810 3.1361 36 1 1.9693 -4.8174 2.6514 37 1 1.5821 -7.2074 2.5053 38 1 3.1295 -7.4681 1.6533 39 1 0.6125 -6.0590 0.5939 40 1 1.5089 -7.4266 -0.1442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:33 Heat of formation + Delta-G solvation = -47.887475 kcal Electronic energy + Delta-G solvation = -20290.182707 eV Core-core repulsion = 17423.699290 eV Total energy + Delta-G solvation = -2866.483417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85106 -37.94683 -36.63988 -34.94981 -33.37092 -31.74539 -29.79170 -28.57949 -26.49842 -24.94882 -23.56382 -22.07075 -21.37518 -21.23490 -19.14527 -17.80914 -17.59506 -17.26798 -16.55545 -16.24450 -16.12220 -15.60575 -15.52850 -14.84986 -14.55907 -14.47057 -14.06804 -13.78516 -13.56649 -13.31168 -13.11703 -13.02616 -12.56212 -12.45538 -12.31872 -12.14823 -12.05319 -11.79328 -11.75439 -11.50793 -11.40846 -10.96828 -10.66518 -10.55417 -10.44620 -8.87983 -8.37566 -8.25362 -6.27549 1.08535 1.27255 1.32154 1.40666 1.73954 2.30980 2.86315 3.02155 3.11080 3.75313 3.79093 4.00167 4.02254 4.04511 4.13748 4.20273 4.28333 4.34680 4.41610 4.50320 4.51993 4.61220 4.68486 4.77846 4.82567 4.84073 4.88826 4.97918 4.99375 5.03367 5.17149 5.21808 5.34466 5.40125 5.61638 6.06669 6.23675 6.41500 6.81152 6.89781 7.37599 8.89278 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.008050 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.935981 B = 3477.353462 C = 4563.468416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.248 1.248 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.209 3.791 10 H -0.023 1.023 11 C -0.150 4.150 12 C 0.064 3.936 13 O -0.406 6.406 14 C 0.067 3.933 15 C 0.026 3.974 16 N -0.538 5.538 17 C 0.080 3.920 18 C -0.020 4.020 19 H 0.107 0.893 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.080 4.080 23 S -0.322 6.322 24 H 0.264 0.736 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.114 0.886 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -10.967 4.778 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.100 3.900 10 H -0.006 1.006 11 C -0.188 4.188 12 C -0.012 4.012 13 O -0.326 6.326 14 C -0.009 4.009 15 C -0.101 4.101 16 N -0.261 5.261 17 C -0.049 4.049 18 C -0.149 4.149 19 H 0.125 0.875 20 C -0.166 4.166 21 C -0.151 4.151 22 C -0.228 4.228 23 S -0.096 6.096 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.316 -10.759 3.119 15.228 hybrid contribution -0.640 1.334 1.695 2.250 sum 9.676 -9.425 4.814 14.340 Atomic orbital electron populations 1.70028 1.07855 1.27626 1.52907 1.25696 0.95330 1.02255 0.94823 0.86137 0.79651 0.79894 0.78767 1.19130 1.22366 1.17210 1.21311 0.90233 0.93334 1.48716 0.92876 1.18444 0.93963 0.86239 0.91392 1.00556 1.22297 0.95256 1.00635 1.00602 1.22391 0.89182 0.90341 0.99301 1.88155 1.49405 1.15762 1.79279 1.22464 1.00535 0.82957 0.94986 1.22504 0.87596 1.02368 0.97643 1.58919 1.05997 1.18275 1.42949 1.22074 1.00874 0.91487 0.90442 1.23858 1.01821 0.96406 0.92803 0.87501 1.22521 1.00688 0.95863 0.97514 1.22596 1.00965 0.96909 0.94620 1.24347 0.99466 0.99799 0.99209 1.88169 1.50573 1.52600 1.18282 0.92740 0.91537 0.92478 0.88824 0.93884 0.93535 0.86790 0.94468 0.87781 0.90977 0.94641 0.87659 0.91935 0.88032 0.89161 0.90687 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.02 0.94 5.44 84.66 0.46 1.40 16 3 Si 0.93 44.20 24.60 68.60 1.69 45.89 16 4 H -0.27 -12.11 6.80 99.48 0.68 -11.43 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -11.01 6.41 99.48 0.64 -10.37 16 7 C -0.50 -27.74 7.94 25.60 0.20 -27.53 16 8 H 0.05 3.32 6.62 -2.91 -0.02 3.31 16 9 C 0.21 9.69 1.10 45.81 0.05 9.74 16 10 H -0.02 -1.09 6.33 -2.39 -0.02 -1.10 16 11 C -0.15 -6.51 4.33 30.33 0.13 -6.37 16 12 C 0.06 2.35 6.26 71.24 0.45 2.79 16 13 O -0.41 -14.30 10.92 -148.98 -1.63 -15.93 16 14 C 0.07 2.11 6.35 71.25 0.45 2.57 16 15 C 0.03 0.82 5.16 85.43 0.44 1.26 16 16 N -0.54 -21.29 3.49 -890.27 -3.11 -24.40 16 17 C 0.08 2.95 4.06 86.31 0.35 3.30 16 18 C -0.02 -0.58 3.17 31.03 0.10 -0.48 16 19 H 0.11 2.65 6.43 -2.39 -0.02 2.64 16 20 C -0.13 -2.83 5.95 31.50 0.19 -2.64 16 21 C -0.11 -2.09 6.51 31.80 0.21 -1.88 16 22 C -0.08 -1.98 7.36 72.71 0.54 -1.45 16 23 S -0.32 -10.86 22.38 -56.49 -1.26 -12.13 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.07 3.03 7.25 -2.38 -0.02 3.01 16 26 H 0.06 2.61 3.97 -2.39 -0.01 2.60 16 27 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.04 1.57 6.61 -2.39 -0.02 1.55 16 29 H 0.05 1.69 7.26 -2.39 -0.02 1.67 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.04 1.22 6.85 -2.38 -0.02 1.20 16 32 H 0.10 2.68 6.00 -2.39 -0.01 2.67 16 33 H 0.07 3.30 5.42 -2.39 -0.01 3.28 16 34 H 0.04 1.22 8.11 -2.39 -0.02 1.21 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.61 7.83 -2.39 -0.02 1.59 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -66.62 303.25 0.47 -66.15 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.92 Total: 17.80 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.56 Total: -19.29 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.81 Total: -82.50 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.63 Total: -15.93 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.69 Total: 45.89 kcal Atomic # 16 Polarization: -10.86 SS G_CDS: -1.26 Total: -12.13 kcal Total: -66.62 0.47 -66.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.261 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds