Wall clock time and date at job start Mon Mar 30 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47470 * 264.99848 * 3 2 1 5 5 H 1.48497 * 109.46941 * 25.00250 * 3 2 1 6 6 H 1.48506 * 109.46870 * 144.99743 * 3 2 1 7 7 C 1.37884 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00161 * 190.19206 * 7 2 1 9 9 C 1.50701 * 119.99395 * 10.19037 * 7 2 1 10 10 O 1.42897 * 113.41399 * 52.27998 * 9 7 2 11 11 C 1.53500 * 114.20367 * 185.47742 * 9 7 2 12 12 N 1.47070 * 87.98438 * 139.65573 * 11 9 7 13 13 C 1.34775 * 136.05897 * 152.84952 * 12 11 9 14 14 O 1.21289 * 119.99527 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00086 * 180.02562 * 13 12 11 16 16 H 1.09003 * 109.47419 * 59.99485 * 15 13 12 17 17 C 1.52993 * 109.46980 * 299.99325 * 15 13 12 18 18 C 1.53004 * 109.47437 * 180.02562 * 17 15 13 19 19 C 1.53005 * 109.46636 * 60.00081 * 18 17 15 20 20 C 1.52993 * 109.47142 * 300.00100 * 19 18 17 21 21 H 1.08998 * 109.47329 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47617 * 300.00240 * 20 19 18 23 23 C 1.53004 * 109.47437 * 60.00391 * 20 19 18 24 24 C 1.47066 * 87.88540 * 333.10076 * 12 11 9 25 25 H 0.97003 * 119.99697 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00529 * 317.21067 * 10 9 7 27 27 H 1.08998 * 113.46461 * 24.88086 * 11 9 7 28 28 H 1.08992 * 113.47111 * 254.43733 * 11 9 7 29 29 H 1.09002 * 109.46987 * 60.00198 * 17 15 13 30 30 H 1.08998 * 109.47546 * 300.00608 * 17 15 13 31 31 H 1.08997 * 109.46685 * 300.00803 * 18 17 15 32 32 H 1.08993 * 109.47495 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.46555 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47194 * 60.00222 * 19 18 17 35 35 H 1.08998 * 109.47207 * 59.99235 * 23 20 19 36 36 H 1.08993 * 109.47495 * 179.97438 * 23 20 19 37 37 H 1.08998 * 113.47126 * 141.67657 * 24 12 11 38 38 H 1.09003 * 113.47294 * 272.11987 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6024 1.9855 -1.3947 5 1 1.3978 2.6808 0.5917 6 1 3.4899 1.4730 0.8031 7 6 2.0046 -1.1941 -0.0005 8 1 3.0718 -1.2015 0.1649 9 6 1.2689 -2.4887 -0.2320 10 8 0.4613 -2.4800 -1.4109 11 6 2.1386 -3.7437 -0.0742 12 7 1.0012 -4.3833 0.6042 13 6 0.5579 -5.6445 0.7758 14 8 1.1703 -6.5734 0.2930 15 6 -0.6993 -5.9002 1.5664 16 1 -1.5371 -5.3888 1.0924 17 6 -0.5211 -5.3741 2.9919 18 6 -1.7973 -5.6343 3.7949 19 6 -2.0752 -7.1383 3.8374 20 6 -2.2534 -7.6644 2.4119 21 1 -2.4510 -8.7359 2.4421 22 9 -3.3290 -7.0084 1.8036 23 6 -0.9773 -7.4042 1.6089 24 6 0.5570 -3.0407 1.0077 25 1 -0.4850 0.8401 0.0004 26 1 -0.0388 -1.6624 -1.5390 27 1 3.0023 -3.5945 0.5737 28 1 2.3985 -4.2138 -1.0226 29 1 -0.3226 -4.3027 2.9616 30 1 0.3166 -5.8854 3.4660 31 1 -2.6352 -5.1232 3.3209 32 1 -1.6705 -5.2590 4.8103 33 1 -2.9846 -7.3236 4.4091 34 1 -1.2372 -7.6494 4.3113 35 1 -0.1392 -7.9153 2.0828 36 1 -1.1040 -7.7794 0.5934 37 1 -0.5252 -2.9140 0.9773 38 1 0.9952 -2.7022 1.9466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335209756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:39 Heat of formation + Delta-G solvation = -119.396611 kcal Electronic energy + Delta-G solvation = -21785.312803 eV Core-core repulsion = 18349.515341 eV Total energy + Delta-G solvation = -3435.797462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.62073 -39.86772 -38.06366 -36.55889 -34.04328 -32.31660 -31.20334 -30.50365 -28.43818 -25.51166 -25.08920 -23.21963 -22.61418 -20.35106 -19.54297 -18.35232 -17.44622 -16.60006 -16.17427 -15.45283 -15.37353 -15.14121 -14.82623 -14.47343 -14.36488 -14.17181 -13.46546 -13.11640 -12.82901 -12.49758 -12.37810 -12.22059 -11.96440 -11.84786 -11.77698 -11.50446 -11.09842 -11.07280 -10.96013 -10.75408 -10.52530 -10.35219 -10.28740 -10.08795 -9.48214 -9.06140 -8.88478 -8.35677 -7.83944 -6.41168 -4.50481 3.14799 3.21192 3.22864 3.25009 3.56701 4.18043 4.46242 4.49651 4.64342 4.74133 4.82522 5.04776 5.08597 5.25246 5.27824 5.36106 5.44475 5.51924 5.65873 5.85766 5.87587 5.94202 6.02983 6.10357 6.13405 6.18572 6.31423 6.37882 6.43000 6.54950 6.66651 6.75351 7.07366 7.59947 7.77458 8.51765 8.55638 8.79024 9.20501 9.24846 10.64987 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.004864 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.682290 B = 5755.725851 C = 6126.286773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.238 3.762 10 O -0.567 6.567 11 C 0.107 3.893 12 N -0.634 5.634 13 C 0.540 3.460 14 O -0.568 6.568 15 C -0.099 4.099 16 H 0.099 0.901 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.146 4.146 20 C 0.092 3.908 21 H 0.083 0.917 22 F -0.213 7.213 23 C -0.123 4.123 24 C 0.082 3.918 25 H 0.272 0.728 26 H 0.386 0.614 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -8.653 7.943 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.196 3.804 10 O -0.375 6.375 11 C -0.016 4.016 12 N -0.367 5.367 13 C 0.330 3.670 14 O -0.449 6.449 15 C -0.120 4.120 16 H 0.117 0.883 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.183 4.183 20 C 0.056 3.944 21 H 0.101 0.899 22 F -0.194 7.194 23 C -0.161 4.161 24 C -0.041 4.041 25 H 0.081 0.919 26 H 0.238 0.762 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.780 -9.808 7.639 12.994 hybrid contribution 0.060 1.528 0.136 1.535 sum -3.721 -8.280 7.775 11.952 Atomic orbital electron populations 1.69766 1.06038 1.28129 1.48730 1.25079 0.95002 0.99790 0.93138 0.86426 0.79806 0.82102 0.78673 1.20130 1.21053 1.19625 1.21341 0.95278 0.90139 1.51115 0.90968 1.19498 0.87308 0.91277 0.82286 1.86091 1.63335 1.44265 1.43828 1.23299 0.90536 0.91586 0.96151 1.49754 1.28559 1.05087 1.53265 1.19955 0.86022 0.80780 0.80261 1.90619 1.59944 1.42351 1.51985 1.21144 0.97075 0.97168 0.96633 0.88307 1.21566 0.98000 1.02257 0.93226 1.21496 0.98282 0.95253 1.00545 1.22152 1.02889 0.97648 0.95654 1.21602 0.84127 0.96151 0.92561 0.89928 1.92801 1.57910 1.83628 1.85023 1.21923 0.96807 0.95645 1.01769 1.24039 1.00801 0.77540 1.01730 0.91851 0.76249 0.89701 0.91713 0.90414 0.91630 0.91042 0.91203 0.90927 0.90164 0.89604 0.90173 0.91535 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.12 11.81 55.43 0.65 -21.47 16 2 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 3 Si 0.90 19.13 29.55 -169.99 -5.02 14.10 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -13.31 8.65 -34.44 -0.30 -13.61 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C 0.24 5.64 1.41 -91.39 -0.13 5.51 16 10 O -0.57 -14.31 13.56 -35.23 -0.48 -14.78 16 11 C 0.11 2.33 8.04 -8.50 -0.07 2.26 16 12 N -0.63 -13.43 3.64 -185.36 -0.67 -14.11 16 13 C 0.54 11.01 7.40 -10.99 -0.08 10.93 16 14 O -0.57 -13.06 16.76 5.55 0.09 -12.97 16 15 C -0.10 -1.59 2.28 -91.77 -0.21 -1.80 16 16 H 0.10 1.68 7.80 -51.93 -0.41 1.28 16 17 C -0.11 -1.55 5.09 -26.73 -0.14 -1.68 16 18 C -0.12 -1.34 5.80 -26.73 -0.16 -1.49 16 19 C -0.15 -1.43 5.72 -26.73 -0.15 -1.59 16 20 C 0.09 1.05 4.12 -26.73 -0.11 0.94 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 F -0.21 -2.98 16.05 2.25 0.04 -2.95 16 23 C -0.12 -1.71 4.29 -26.73 -0.11 -1.82 16 24 C 0.08 1.75 6.14 -8.64 -0.05 1.69 16 25 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 26 H 0.39 9.71 7.09 45.56 0.32 10.03 16 27 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.15 6.35 -51.93 -0.33 0.82 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.77 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.65 8.05 -51.93 -0.42 1.23 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -27.93 311.34 -7.30 -35.23 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.00 Total: 11.20 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.60 Total: 1.04 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.02 Total: -35.57 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.38 Total: -27.75 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.93 -7.30 -35.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.162 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds