Wall clock time and date at job start Mon Mar 30 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47470 * 264.99848 * 3 2 1 5 5 H 1.48497 * 109.46941 * 25.00250 * 3 2 1 6 6 H 1.48506 * 109.46870 * 144.99743 * 3 2 1 7 7 C 1.37884 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00161 * 190.19206 * 7 2 1 9 9 C 1.50701 * 119.99395 * 10.19037 * 7 2 1 10 10 O 1.42897 * 113.41399 * 52.27998 * 9 7 2 11 11 C 1.53500 * 114.20367 * 185.47742 * 9 7 2 12 12 N 1.47070 * 87.98438 * 139.65573 * 11 9 7 13 13 C 1.34775 * 136.05897 * 152.84952 * 12 11 9 14 14 O 1.21289 * 119.99527 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00086 * 180.02562 * 13 12 11 16 16 H 1.09003 * 109.47419 * 59.99485 * 15 13 12 17 17 C 1.52993 * 109.46980 * 299.99325 * 15 13 12 18 18 C 1.53004 * 109.47437 * 180.02562 * 17 15 13 19 19 C 1.53005 * 109.46636 * 60.00081 * 18 17 15 20 20 C 1.52993 * 109.47142 * 300.00100 * 19 18 17 21 21 H 1.08998 * 109.47329 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47617 * 300.00240 * 20 19 18 23 23 C 1.53004 * 109.47437 * 60.00391 * 20 19 18 24 24 C 1.47066 * 87.88540 * 333.10076 * 12 11 9 25 25 H 0.97003 * 119.99697 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00529 * 317.21067 * 10 9 7 27 27 H 1.08998 * 113.46461 * 24.88086 * 11 9 7 28 28 H 1.08992 * 113.47111 * 254.43733 * 11 9 7 29 29 H 1.09002 * 109.46987 * 60.00198 * 17 15 13 30 30 H 1.08998 * 109.47546 * 300.00608 * 17 15 13 31 31 H 1.08997 * 109.46685 * 300.00803 * 18 17 15 32 32 H 1.08993 * 109.47495 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.46555 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47194 * 60.00222 * 19 18 17 35 35 H 1.08998 * 109.47207 * 59.99235 * 23 20 19 36 36 H 1.08993 * 109.47495 * 179.97438 * 23 20 19 37 37 H 1.08998 * 113.47126 * 141.67657 * 24 12 11 38 38 H 1.09003 * 113.47294 * 272.11987 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6024 1.9855 -1.3947 5 1 1.3978 2.6808 0.5917 6 1 3.4899 1.4730 0.8031 7 6 2.0046 -1.1941 -0.0005 8 1 3.0718 -1.2015 0.1649 9 6 1.2689 -2.4887 -0.2320 10 8 0.4613 -2.4800 -1.4109 11 6 2.1386 -3.7437 -0.0742 12 7 1.0012 -4.3833 0.6042 13 6 0.5579 -5.6445 0.7758 14 8 1.1703 -6.5734 0.2930 15 6 -0.6993 -5.9002 1.5664 16 1 -1.5371 -5.3888 1.0924 17 6 -0.5211 -5.3741 2.9919 18 6 -1.7973 -5.6343 3.7949 19 6 -2.0752 -7.1383 3.8374 20 6 -2.2534 -7.6644 2.4119 21 1 -2.4510 -8.7359 2.4421 22 9 -3.3290 -7.0084 1.8036 23 6 -0.9773 -7.4042 1.6089 24 6 0.5570 -3.0407 1.0077 25 1 -0.4850 0.8401 0.0004 26 1 -0.0388 -1.6624 -1.5390 27 1 3.0023 -3.5945 0.5737 28 1 2.3985 -4.2138 -1.0226 29 1 -0.3226 -4.3027 2.9616 30 1 0.3166 -5.8854 3.4660 31 1 -2.6352 -5.1232 3.3209 32 1 -1.6705 -5.2590 4.8103 33 1 -2.9846 -7.3236 4.4091 34 1 -1.2372 -7.6494 4.3113 35 1 -0.1392 -7.9153 2.0828 36 1 -1.1040 -7.7794 0.5934 37 1 -0.5252 -2.9140 0.9773 38 1 0.9952 -2.7022 1.9466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335209756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:38 Heat of formation + Delta-G solvation = -137.450853 kcal Electronic energy + Delta-G solvation = -21786.095694 eV Core-core repulsion = 18349.515341 eV Total energy + Delta-G solvation = -3436.580353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61824 -41.51732 -39.61959 -37.89277 -35.93120 -34.23353 -32.37607 -31.54981 -30.09446 -27.28558 -26.84509 -24.46917 -23.62729 -21.91846 -20.69880 -20.01009 -19.23338 -18.08987 -17.59230 -17.05380 -16.66040 -16.42433 -16.14953 -15.91977 -15.85271 -15.60366 -14.94914 -14.67746 -14.27860 -13.95161 -13.79331 -13.63154 -13.51037 -13.28947 -12.99402 -12.78996 -12.72879 -12.52122 -12.25080 -12.20888 -12.11144 -11.79123 -11.47361 -11.18111 -11.05759 -10.86767 -10.66067 -10.18667 -9.60690 -8.27513 -6.43248 1.47033 1.51161 1.57715 1.59645 1.94804 2.41179 2.94071 3.29729 3.48699 3.61453 3.66072 3.85355 3.93781 4.04148 4.09476 4.19958 4.26769 4.33770 4.43827 4.48760 4.60108 4.62854 4.79111 4.89135 4.91842 4.93956 5.03698 5.06683 5.07299 5.17388 5.21951 5.27834 5.42325 5.70327 5.88588 6.62119 6.86214 7.11140 7.27750 7.30499 8.78238 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.004864 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.682290 B = 5755.725851 C = 6126.286773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.073 0.927 9 C 0.218 3.782 10 O -0.580 6.580 11 C 0.106 3.894 12 N -0.637 5.637 13 C 0.532 3.468 14 O -0.597 6.597 15 C -0.094 4.094 16 H 0.085 0.915 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.090 3.910 21 H 0.114 0.886 22 F -0.230 7.230 23 C -0.121 4.121 24 C 0.101 3.899 25 H 0.274 0.726 26 H 0.383 0.617 27 H 0.104 0.896 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -8.972 9.798 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.165 4.165 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.177 3.823 10 O -0.389 6.389 11 C -0.017 4.017 12 N -0.369 5.369 13 C 0.324 3.676 14 O -0.480 6.480 15 C -0.115 4.115 16 H 0.103 0.897 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.178 4.178 20 C 0.054 3.946 21 H 0.132 0.868 22 F -0.211 7.211 23 C -0.159 4.159 24 C -0.022 4.022 25 H 0.084 0.916 26 H 0.234 0.766 27 H 0.122 0.878 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.926 -10.134 9.504 14.437 hybrid contribution 0.124 1.607 -0.500 1.687 sum -3.803 -8.528 9.003 12.971 Atomic orbital electron populations 1.69833 1.07011 1.28885 1.48836 1.25715 0.95689 1.02393 0.92659 0.85481 0.78739 0.78529 0.78354 1.20362 1.20788 1.19115 1.21533 0.95482 0.90853 1.51757 0.90850 1.19766 0.88019 0.91956 0.82571 1.86078 1.63640 1.44148 1.45000 1.23320 0.91246 0.90860 0.96241 1.49830 1.28353 1.05474 1.53260 1.20816 0.86943 0.79929 0.79919 1.90593 1.61186 1.42992 1.53193 1.21181 0.93919 0.99023 0.97336 0.89655 1.21556 0.99895 1.01246 0.91898 1.21492 0.96168 0.96686 1.00937 1.22175 1.04729 0.96269 0.94647 1.21824 0.82073 0.97879 0.92796 0.86849 1.92773 1.58636 1.84166 1.85507 1.21933 0.98740 0.93669 1.01578 1.23785 0.99976 0.77336 1.01107 0.91648 0.76596 0.87813 0.92935 0.91870 0.90743 0.92352 0.89088 0.88899 0.88167 0.88820 0.91928 0.92409 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.06 11.81 21.45 0.25 -44.80 16 2 C 0.04 1.81 5.21 84.66 0.44 2.26 16 3 Si 0.96 38.67 29.55 68.60 2.03 40.70 16 4 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.56 -27.39 8.65 25.60 0.22 -27.17 16 8 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 9 C 0.22 10.42 1.41 -11.29 -0.02 10.40 16 10 O -0.58 -29.94 13.56 -148.98 -2.02 -31.96 16 11 C 0.11 4.67 8.04 83.18 0.67 5.34 16 12 N -0.64 -27.18 3.64 -859.22 -3.13 -30.30 16 13 C 0.53 21.84 7.40 87.66 0.65 22.49 16 14 O -0.60 -27.69 16.76 -3.06 -0.05 -27.74 16 15 C -0.09 -2.98 2.28 -11.54 -0.03 -3.01 16 16 H 0.09 2.96 7.80 -2.39 -0.02 2.94 16 17 C -0.11 -2.82 5.09 30.59 0.16 -2.66 16 18 C -0.12 -2.33 5.80 30.60 0.18 -2.15 16 19 C -0.14 -2.27 5.72 30.59 0.17 -2.09 16 20 C 0.09 1.84 4.12 30.59 0.13 1.96 16 21 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 22 F -0.23 -6.13 16.05 44.97 0.72 -5.41 16 23 C -0.12 -3.22 4.29 30.60 0.13 -3.09 16 24 C 0.10 4.32 6.14 83.10 0.51 4.83 16 25 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 26 H 0.38 19.75 7.09 -74.06 -0.53 19.22 16 27 H 0.10 4.12 8.10 -2.39 -0.02 4.10 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.06 1.82 6.35 -2.39 -0.02 1.80 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.34 7.80 -2.39 -0.02 1.32 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 36 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.09 3.69 8.05 -2.39 -0.02 3.67 16 Total: -1.00 -59.49 311.34 1.55 -57.94 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.54 Total: 34.46 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 3.21 Total: 7.11 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.87 Total: -75.11 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -2.07 Total: -59.70 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.72 Total: -5.41 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -59.49 1.55 -57.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.514 kcal (2) G-P(sol) polarization free energy of solvation -59.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds