Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00561 * 3 2 1 5 5 H 1.48503 * 109.46658 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99938 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99944 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93955 * 309.66876 * 9 7 2 11 11 C 1.53944 * 113.84009 * 81.35170 * 9 7 2 12 12 N 1.47586 * 86.11584 * 137.96583 * 11 9 7 13 13 C 1.34774 * 134.49220 * 155.35926 * 12 11 9 14 14 O 1.21281 * 119.99661 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99702 * 0.02562 * 13 12 11 16 16 H 1.08999 * 109.47344 * 299.99578 * 15 13 12 17 17 C 1.52999 * 109.47362 * 60.00235 * 15 13 12 18 18 C 1.52998 * 109.47282 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47023 * 299.99852 * 18 17 15 20 20 C 1.52997 * 109.47240 * 60.00226 * 19 18 17 21 21 H 1.08999 * 109.47573 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47572 * 59.99645 * 20 19 18 23 23 C 1.52998 * 109.46929 * 299.99832 * 20 19 18 24 24 C 1.47583 * 91.01287 * 335.36462 * 12 11 9 25 25 H 0.97006 * 120.00105 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 48.41100 * 10 9 7 27 27 H 1.09001 * 113.77002 * 252.26551 * 11 9 7 28 28 H 1.09001 * 113.76680 * 23.66817 * 11 9 7 29 29 H 1.09002 * 109.46614 * 299.99700 * 17 15 13 30 30 H 1.08994 * 109.46977 * 59.99467 * 17 15 13 31 31 H 1.09001 * 109.47268 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.47058 * 59.99567 * 18 17 15 33 33 H 1.08993 * 109.47631 * 299.99764 * 19 18 17 34 34 H 1.09010 * 109.46780 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47229 * 299.99579 * 23 20 19 36 36 H 1.09001 * 109.47268 * 180.02562 * 23 20 19 37 37 H 1.09007 * 113.76493 * 270.33882 * 24 12 11 38 38 H 1.08998 * 113.87463 * 138.95900 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5617 1.0128 11 6 0.7560 -2.9318 -1.3925 12 7 1.1898 -4.2907 -1.0138 13 6 0.8397 -5.5348 -1.3961 14 8 1.3827 -6.4977 -0.8972 15 6 -0.2264 -5.7293 -2.4433 16 1 -1.1607 -5.2875 -2.0971 17 6 0.2071 -5.0511 -3.7445 18 6 -0.8749 -5.2490 -4.8079 19 6 -1.0786 -6.7450 -5.0558 20 6 -1.5122 -7.4232 -3.7547 21 1 -1.6569 -8.4891 -3.9312 22 9 -2.7117 -6.8566 -3.3105 23 6 -0.4301 -7.2253 -2.6913 24 6 2.1607 -3.7401 -0.0483 25 1 -0.4850 0.8401 0.0004 26 1 -0.3283 -1.7840 1.0462 27 1 -0.3216 -2.8356 -1.5251 28 1 1.3272 -2.5017 -2.2152 29 1 0.3526 -3.9854 -3.5677 30 1 1.1414 -5.4928 -4.0907 31 1 -0.5663 -4.7655 -5.7347 32 1 -1.8095 -4.8076 -4.4618 33 1 -0.1442 -7.1866 -5.4019 34 1 -1.8499 -6.8860 -5.8131 35 1 0.5045 -7.6668 -3.0373 36 1 -0.7387 -7.7088 -1.7645 37 1 3.1445 -3.5473 -0.4762 38 1 2.2062 -4.2881 0.8928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335209758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = -122.875115 kcal Electronic energy + Delta-G solvation = -21798.631373 eV Core-core repulsion = 18362.683072 eV Total energy + Delta-G solvation = -3435.948301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.62841 -39.80958 -37.95914 -36.55226 -33.95885 -32.22544 -31.20092 -30.50514 -28.37202 -25.48213 -25.27985 -23.19936 -22.62041 -20.25485 -19.50726 -18.35431 -17.43259 -16.63761 -16.19919 -15.46047 -15.37917 -15.14443 -14.83246 -14.48775 -14.38798 -14.09535 -13.47857 -13.08037 -12.75301 -12.49780 -12.37270 -12.24254 -11.95401 -11.82408 -11.62090 -11.48660 -11.13177 -11.06790 -11.03777 -10.75930 -10.55165 -10.36157 -10.29444 -10.09068 -9.55431 -9.11532 -8.76935 -8.39435 -7.82626 -6.39690 -4.50533 3.15503 3.21027 3.21709 3.24296 3.55419 4.17876 4.45568 4.48188 4.63143 4.73287 4.84727 5.04087 5.07599 5.23930 5.27026 5.35264 5.44694 5.56131 5.67610 5.85411 5.88152 5.95807 6.02064 6.09685 6.12416 6.17933 6.30096 6.36127 6.41765 6.51312 6.65369 6.70027 7.10213 7.62064 7.81046 8.50963 8.52681 8.77902 9.20823 9.42708 10.66765 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004910 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.233923 B = 5700.791064 C = 6062.135420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.080 3.920 12 N -0.630 5.630 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.100 4.100 16 H 0.098 0.902 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.146 4.146 20 C 0.092 3.908 21 H 0.083 0.917 22 F -0.213 7.213 23 C -0.123 4.123 24 C 0.110 3.890 25 H 0.274 0.726 26 H 0.392 0.608 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -7.912 -9.939 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.043 4.043 12 N -0.363 5.363 13 C 0.323 3.677 14 O -0.449 6.449 15 C -0.121 4.121 16 H 0.116 0.884 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.183 4.183 20 C 0.056 3.944 21 H 0.101 0.899 22 F -0.194 7.194 23 C -0.161 4.161 24 C -0.012 4.012 25 H 0.084 0.916 26 H 0.247 0.753 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.961 -9.029 -9.603 13.326 hybrid contribution 0.046 1.491 -0.193 1.504 sum -1.915 -7.538 -9.796 12.508 Atomic orbital electron populations 1.69395 1.06139 1.28283 1.49940 1.25067 0.95021 0.99821 0.93085 0.86405 0.79519 0.81709 0.78982 1.19910 1.20996 1.19859 1.21465 0.93891 0.89976 1.52332 0.91135 1.19846 0.85629 0.91190 0.83666 1.86063 1.48217 1.48305 1.55871 1.24272 0.99999 0.77590 1.02411 1.50150 1.39897 1.04843 1.41361 1.20096 0.83528 0.81661 0.82454 1.90615 1.56930 1.39556 1.57802 1.21155 0.99049 0.96932 0.95001 0.88359 1.21573 0.98592 1.01627 0.93308 1.21496 0.99739 0.95321 0.99019 1.22150 1.02512 0.97111 0.96567 1.21603 0.81022 0.97266 0.94557 0.89935 1.92800 1.48304 1.87302 1.90968 1.21920 0.99039 0.95819 0.99358 1.23448 0.93319 0.92864 0.91557 0.91613 0.75347 0.91315 0.90081 0.90405 0.91612 0.91209 0.91060 0.90163 0.90933 0.89613 0.90186 0.89748 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.48 11.19 55.43 0.62 -21.86 16 2 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 3 Si 0.91 19.23 29.54 -169.99 -5.02 14.20 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.35 8.62 -34.44 -0.30 -13.64 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.67 1.41 -90.85 -0.13 5.55 16 10 O -0.57 -14.74 13.50 -35.23 -0.48 -15.21 16 11 C 0.08 1.69 6.28 -2.97 -0.02 1.67 16 12 N -0.63 -13.26 3.57 -178.32 -0.64 -13.90 16 13 C 0.53 10.80 7.38 -10.99 -0.08 10.72 16 14 O -0.57 -13.00 16.71 5.56 0.09 -12.91 16 15 C -0.10 -1.60 2.24 -91.77 -0.21 -1.80 16 16 H 0.10 1.65 7.80 -51.93 -0.41 1.25 16 17 C -0.11 -1.54 5.08 -26.73 -0.14 -1.67 16 18 C -0.12 -1.32 5.80 -26.73 -0.16 -1.48 16 19 C -0.15 -1.42 5.72 -26.73 -0.15 -1.57 16 20 C 0.09 1.04 4.12 -26.73 -0.11 0.93 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 22 F -0.21 -2.96 16.05 2.25 0.04 -2.93 16 23 C -0.12 -1.70 4.29 -26.73 -0.11 -1.81 16 24 C 0.11 2.41 8.22 -2.98 -0.02 2.39 16 25 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 26 H 0.39 10.13 6.56 45.56 0.30 10.43 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.63 7.92 -51.93 -0.41 1.22 16 29 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -28.05 310.04 -7.24 -35.29 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.01 Total: 11.69 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.52 Total: 0.96 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.02 Total: -35.76 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.38 Total: -28.12 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.05 -7.24 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.589 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds