Wall clock time and date at job start Mon Mar 30 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00561 * 3 2 1 5 5 H 1.48503 * 109.46658 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99938 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99944 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93955 * 309.66876 * 9 7 2 11 11 C 1.53944 * 113.84009 * 81.35170 * 9 7 2 12 12 N 1.47586 * 86.11584 * 137.96583 * 11 9 7 13 13 C 1.34774 * 134.49220 * 155.35926 * 12 11 9 14 14 O 1.21281 * 119.99661 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99702 * 0.02562 * 13 12 11 16 16 H 1.08999 * 109.47344 * 299.99578 * 15 13 12 17 17 C 1.52999 * 109.47362 * 60.00235 * 15 13 12 18 18 C 1.52998 * 109.47282 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47023 * 299.99852 * 18 17 15 20 20 C 1.52997 * 109.47240 * 60.00226 * 19 18 17 21 21 H 1.08999 * 109.47573 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47572 * 59.99645 * 20 19 18 23 23 C 1.52998 * 109.46929 * 299.99832 * 20 19 18 24 24 C 1.47583 * 91.01287 * 335.36462 * 12 11 9 25 25 H 0.97006 * 120.00105 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 48.41100 * 10 9 7 27 27 H 1.09001 * 113.77002 * 252.26551 * 11 9 7 28 28 H 1.09001 * 113.76680 * 23.66817 * 11 9 7 29 29 H 1.09002 * 109.46614 * 299.99700 * 17 15 13 30 30 H 1.08994 * 109.46977 * 59.99467 * 17 15 13 31 31 H 1.09001 * 109.47268 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.47058 * 59.99567 * 18 17 15 33 33 H 1.08993 * 109.47631 * 299.99764 * 19 18 17 34 34 H 1.09010 * 109.46780 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47229 * 299.99579 * 23 20 19 36 36 H 1.09001 * 109.47268 * 180.02562 * 23 20 19 37 37 H 1.09007 * 113.76493 * 270.33882 * 24 12 11 38 38 H 1.08998 * 113.87463 * 138.95900 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5617 1.0128 11 6 0.7560 -2.9318 -1.3925 12 7 1.1898 -4.2907 -1.0138 13 6 0.8397 -5.5348 -1.3961 14 8 1.3827 -6.4977 -0.8972 15 6 -0.2264 -5.7293 -2.4433 16 1 -1.1607 -5.2875 -2.0971 17 6 0.2071 -5.0511 -3.7445 18 6 -0.8749 -5.2490 -4.8079 19 6 -1.0786 -6.7450 -5.0558 20 6 -1.5122 -7.4232 -3.7547 21 1 -1.6569 -8.4891 -3.9312 22 9 -2.7117 -6.8566 -3.3105 23 6 -0.4301 -7.2253 -2.6913 24 6 2.1607 -3.7401 -0.0483 25 1 -0.4850 0.8401 0.0004 26 1 -0.3283 -1.7840 1.0462 27 1 -0.3216 -2.8356 -1.5251 28 1 1.3272 -2.5017 -2.2152 29 1 0.3526 -3.9854 -3.5677 30 1 1.1414 -5.4928 -4.0907 31 1 -0.5663 -4.7655 -5.7347 32 1 -1.8095 -4.8076 -4.4618 33 1 -0.1442 -7.1866 -5.4019 34 1 -1.8499 -6.8860 -5.8131 35 1 0.5045 -7.6668 -3.0373 36 1 -0.7387 -7.7088 -1.7645 37 1 3.1445 -3.5473 -0.4762 38 1 2.2062 -4.2881 0.8928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335209758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:41 Heat of formation + Delta-G solvation = -140.890902 kcal Electronic energy + Delta-G solvation = -21799.412596 eV Core-core repulsion = 18362.683072 eV Total energy + Delta-G solvation = -3436.729524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.61795 -41.43405 -39.51630 -37.88507 -35.84844 -34.15653 -32.35977 -31.53994 -30.03517 -27.23810 -27.03631 -24.43367 -23.62233 -21.79084 -20.69014 -19.99996 -19.23583 -18.12436 -17.60102 -17.05353 -16.66340 -16.42365 -16.14069 -15.87864 -15.82731 -15.61694 -14.91861 -14.57541 -14.25746 -13.95792 -13.76209 -13.53000 -13.44258 -13.28644 -12.98620 -12.86356 -12.74100 -12.51930 -12.26843 -12.22230 -12.11675 -11.78673 -11.48261 -11.25742 -11.06169 -10.83056 -10.61390 -10.21785 -9.58579 -8.26414 -6.44187 1.48315 1.50503 1.57417 1.60338 1.93609 2.40952 2.95884 3.28251 3.49103 3.62083 3.72911 3.86002 3.94809 4.05111 4.12869 4.20227 4.27144 4.34250 4.44440 4.48609 4.58336 4.63017 4.77745 4.87753 4.90671 4.93116 5.03869 5.07335 5.07655 5.17699 5.23695 5.28116 5.42647 5.71910 5.91634 6.61473 6.83614 7.11639 7.29693 7.42707 8.79318 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004910 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.233923 B = 5700.791064 C = 6062.135420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.217 3.783 10 O -0.588 6.588 11 C 0.099 3.901 12 N -0.632 5.632 13 C 0.526 3.474 14 O -0.598 6.598 15 C -0.095 4.095 16 H 0.086 0.914 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.141 4.141 20 C 0.090 3.910 21 H 0.113 0.887 22 F -0.230 7.230 23 C -0.121 4.121 24 C 0.109 3.891 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -7.989 -12.028 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.091 0.909 9 C 0.176 3.824 10 O -0.400 6.400 11 C -0.023 4.023 12 N -0.365 5.365 13 C 0.317 3.683 14 O -0.480 6.480 15 C -0.116 4.116 16 H 0.104 0.896 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.178 4.178 20 C 0.054 3.946 21 H 0.131 0.869 22 F -0.211 7.211 23 C -0.159 4.159 24 C -0.013 4.013 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.721 -9.114 -11.703 14.933 hybrid contribution -0.020 1.487 0.529 1.578 sum -1.741 -7.628 -11.174 13.641 Atomic orbital electron populations 1.69465 1.07131 1.29012 1.50042 1.25744 0.95741 1.02561 0.92606 0.85450 0.78285 0.78032 0.78924 1.19100 1.20818 1.20095 1.21684 0.94152 0.90699 1.52999 0.90932 1.20158 0.85834 0.91868 0.84540 1.86048 1.48718 1.48172 1.57065 1.24035 0.99696 0.77366 1.01250 1.50200 1.39771 1.05287 1.41228 1.20939 0.83886 0.80755 0.82726 1.90589 1.58221 1.40235 1.58990 1.21190 0.96623 0.98973 0.94784 0.89597 1.21567 0.99939 1.00477 0.92678 1.21492 0.98111 0.96857 0.98818 1.22174 1.04136 0.95618 0.95907 1.21819 0.79329 0.99219 0.94202 0.86923 1.92772 1.49296 1.87739 1.91260 1.21928 1.00474 0.93796 0.99727 1.23459 0.94176 0.92077 0.91625 0.91436 0.75828 0.91870 0.88770 0.91694 0.90797 0.89079 0.92289 0.88222 0.88923 0.88892 0.91980 0.87863 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.84 11.19 21.45 0.24 -45.60 16 2 C 0.03 1.67 5.39 84.66 0.46 2.12 16 3 Si 0.97 38.80 29.54 68.60 2.03 40.83 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -27.53 8.62 25.60 0.22 -27.31 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 9 C 0.22 10.43 1.41 -10.88 -0.02 10.41 16 10 O -0.59 -30.99 13.50 -148.98 -2.01 -33.00 16 11 C 0.10 4.19 6.28 86.48 0.54 4.73 16 12 N -0.63 -26.78 3.57 -840.29 -3.00 -29.78 16 13 C 0.53 21.39 7.38 87.66 0.65 22.04 16 14 O -0.60 -27.61 16.71 -3.03 -0.05 -27.66 16 15 C -0.09 -2.98 2.24 -11.54 -0.03 -3.00 16 16 H 0.09 2.92 7.80 -2.39 -0.02 2.91 16 17 C -0.11 -2.78 5.08 30.59 0.16 -2.63 16 18 C -0.12 -2.28 5.80 30.59 0.18 -2.10 16 19 C -0.14 -2.24 5.72 30.59 0.17 -2.06 16 20 C 0.09 1.82 4.12 30.59 0.13 1.95 16 21 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 22 F -0.23 -6.06 16.05 44.97 0.72 -5.34 16 23 C -0.12 -3.20 4.29 30.60 0.13 -3.07 16 24 C 0.11 4.81 8.22 86.48 0.71 5.52 16 25 H 0.28 13.12 8.31 -92.70 -0.77 12.35 16 26 H 0.39 20.58 6.56 -74.06 -0.49 20.09 16 27 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.09 3.71 7.92 -2.39 -0.02 3.70 16 29 H 0.06 1.82 6.13 -2.39 -0.01 1.80 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.32 7.80 -2.39 -0.02 1.30 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 36 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.10 4.11 8.09 -2.38 -0.02 4.09 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -59.92 310.04 1.81 -58.11 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.58 Total: 35.84 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.30 Total: 6.61 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.76 Total: -75.38 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -2.06 Total: -60.66 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.72 Total: -5.34 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -59.92 1.81 -58.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.779 kcal (2) G-P(sol) polarization free energy of solvation -59.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds