Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48507 * 109.47271 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47358 * 29.99766 * 3 2 1 6 6 H 1.48499 * 109.47404 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99757 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.28477 * 313.06342 * 9 7 2 11 11 C 1.53499 * 114.20726 * 180.02562 * 9 7 2 12 12 N 1.47067 * 87.98766 * 220.14832 * 11 9 7 13 13 C 1.34768 * 136.05903 * 207.08508 * 12 11 9 14 14 O 1.21278 * 120.00215 * 185.00544 * 13 12 11 15 15 C 1.50708 * 119.99999 * 4.99912 * 13 12 11 16 16 H 1.08999 * 109.46651 * 26.07856 * 15 13 12 17 17 C 1.52996 * 109.46828 * 146.07271 * 15 13 12 18 18 C 1.52997 * 109.47240 * 180.02562 * 17 15 13 19 19 C 1.53007 * 109.47229 * 300.00346 * 18 17 15 20 20 C 1.52999 * 109.46812 * 59.99468 * 19 18 17 21 21 H 1.09003 * 109.47273 * 60.00600 * 20 19 18 22 22 F 1.39904 * 109.46779 * 180.02562 * 20 19 18 23 23 C 1.52992 * 109.47439 * 300.00007 * 20 19 18 24 24 C 1.47062 * 87.88236 * 27.33958 * 12 11 9 25 25 H 0.96997 * 120.00131 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99680 * 46.94142 * 10 9 7 27 27 H 1.08995 * 113.47227 * 105.36288 * 11 9 7 28 28 H 1.09003 * 113.51734 * 334.93752 * 11 9 7 29 29 H 1.09003 * 109.47211 * 60.00348 * 17 15 13 30 30 H 1.09007 * 109.47472 * 300.00301 * 17 15 13 31 31 H 1.09003 * 109.47049 * 59.99864 * 18 17 15 32 32 H 1.09001 * 109.47730 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.47050 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46712 * 299.99725 * 19 18 17 35 35 H 1.08997 * 109.47757 * 300.00434 * 23 20 19 36 36 H 1.09001 * 109.47511 * 180.02562 * 23 20 19 37 37 H 1.09008 * 113.46987 * 87.44092 * 24 12 11 38 38 H 1.09002 * 113.47151 * 217.87647 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1928 -2.5395 0.9611 11 6 2.1488 -3.7442 0.0028 12 7 1.2073 -4.3602 -0.9443 13 6 0.8319 -5.6150 -1.2618 14 8 0.0663 -5.8041 -2.1832 15 6 1.3636 -6.7832 -0.4721 16 1 1.6269 -6.4528 0.5327 17 6 0.2914 -7.8712 -0.3865 18 6 0.8308 -9.0570 0.4158 19 6 2.0735 -9.6190 -0.2778 20 6 3.1457 -8.5309 -0.3633 21 1 3.4088 -8.2002 0.6415 22 9 4.2817 -9.0446 -0.9980 23 6 2.6062 -7.3452 -1.1657 24 6 0.8605 -3.0046 -1.3968 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3709 -1.7538 0.9582 27 1 2.1879 -4.2504 0.9673 28 1 3.1376 -3.5679 -0.4207 29 1 0.0280 -8.2017 -1.3913 30 1 -0.5938 -7.4710 0.1080 31 1 1.0939 -8.7263 1.4205 32 1 0.0671 -9.8324 0.4764 33 1 2.4575 -10.4641 0.2936 34 1 1.8104 -9.9497 -1.2826 35 1 2.3432 -7.6758 -2.1704 36 1 3.3702 -6.5702 -1.2270 37 1 1.5093 -2.6323 -2.1898 38 1 -0.1982 -2.8806 -1.6248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335209760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = -120.891393 kcal Electronic energy + Delta-G solvation = -21482.801581 eV Core-core repulsion = 18046.939300 eV Total energy + Delta-G solvation = -3435.862280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.70322 -39.93406 -38.29336 -36.66052 -34.04616 -32.21344 -31.37652 -30.18836 -28.56474 -25.59641 -25.15102 -23.25963 -22.59446 -20.51614 -19.83213 -18.31315 -17.48985 -16.56996 -16.10184 -15.88203 -15.29288 -15.21625 -14.81320 -14.61067 -14.32763 -14.07181 -13.79384 -13.11945 -13.03975 -12.74738 -12.56689 -12.26559 -12.08247 -11.63846 -11.55749 -11.38709 -11.18096 -11.09565 -10.95222 -10.71930 -10.67949 -10.48743 -10.33923 -10.29425 -9.70946 -9.06944 -8.78497 -8.41893 -7.87638 -6.41922 -4.52880 3.10583 3.13309 3.21510 3.23926 3.50136 4.15903 4.33570 4.40207 4.52075 4.72684 4.81290 4.92256 4.97645 5.09880 5.20375 5.28348 5.43854 5.47614 5.55076 5.72876 5.81407 5.86622 5.92591 5.97771 6.04534 6.14846 6.22870 6.23904 6.34377 6.40481 6.69721 6.77774 7.08071 7.60862 7.76915 8.47158 8.51535 8.74446 9.18526 9.44798 10.64887 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.004349 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.071689 B = 6436.051934 C = 6795.623774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.241 3.759 10 O -0.573 6.573 11 C 0.100 3.900 12 N -0.634 5.634 13 C 0.540 3.460 14 O -0.561 6.561 15 C -0.096 4.096 16 H 0.091 0.909 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.094 3.906 21 H 0.085 0.915 22 F -0.215 7.215 23 C -0.132 4.132 24 C 0.077 3.923 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -12.752 1.885 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.199 3.801 10 O -0.386 6.386 11 C -0.023 4.023 12 N -0.366 5.366 13 C 0.329 3.671 14 O -0.441 6.441 15 C -0.117 4.117 16 H 0.109 0.891 17 C -0.144 4.144 18 C -0.153 4.153 19 C -0.183 4.183 20 C 0.058 3.942 21 H 0.103 0.897 22 F -0.196 7.196 23 C -0.170 4.170 24 C -0.045 4.045 25 H 0.085 0.915 26 H 0.252 0.748 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.809 -13.514 1.475 14.117 hybrid contribution 0.267 1.452 -0.283 1.503 sum 4.076 -12.062 1.193 12.788 Atomic orbital electron populations 1.69264 1.06254 1.28283 1.49913 1.25089 0.95009 0.99997 0.92963 0.86306 0.79761 0.81878 0.78433 1.20268 1.20863 1.19490 1.21417 0.93863 0.89790 1.52317 0.90909 1.19569 0.85269 0.90928 0.84343 1.86000 1.45277 1.48634 1.58684 1.23406 0.93976 0.93129 0.91796 1.49806 1.42021 1.04821 1.39994 1.19862 0.81442 0.82145 0.83675 1.90633 1.37842 1.84507 1.31090 1.21117 0.96132 0.94329 1.00156 0.89102 1.21446 0.97218 0.93955 1.01766 1.21487 0.96684 0.97889 0.99199 1.22148 0.95631 0.97825 1.02693 1.21559 0.82403 0.93888 0.96324 0.89676 1.92805 1.53535 1.88656 1.84631 1.22004 0.97088 0.97547 1.00349 1.24214 1.00761 0.77471 1.02066 0.91510 0.74808 0.91577 0.89502 0.90481 0.91089 0.91407 0.90871 0.90812 0.90624 0.90069 0.90344 0.90384 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.89 11.01 55.43 0.61 -22.28 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 3 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.54 -13.17 8.70 -34.44 -0.30 -13.47 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.68 1.58 -91.12 -0.14 5.53 16 10 O -0.57 -14.52 13.55 -35.23 -0.48 -15.00 16 11 C 0.10 1.96 7.67 -8.52 -0.07 1.89 16 12 N -0.63 -13.20 3.69 -185.07 -0.68 -13.88 16 13 C 0.54 10.69 7.09 -10.99 -0.08 10.61 16 14 O -0.56 -12.91 17.03 5.56 0.09 -12.82 16 15 C -0.10 -1.40 2.41 -91.77 -0.22 -1.62 16 16 H 0.09 1.25 7.64 -51.93 -0.40 0.85 16 17 C -0.11 -1.37 4.85 -26.73 -0.13 -1.50 16 18 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 19 C -0.15 -1.38 5.66 -26.73 -0.15 -1.54 16 20 C 0.09 1.04 3.88 -26.74 -0.10 0.94 16 21 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 22 F -0.22 -2.77 17.08 2.25 0.04 -2.73 16 23 C -0.13 -1.71 4.92 -26.74 -0.13 -1.84 16 24 C 0.08 1.78 8.05 -8.39 -0.07 1.71 16 25 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 26 H 0.40 10.30 6.33 45.56 0.29 10.59 16 27 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 28 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 29 H 0.08 1.07 7.85 -51.93 -0.41 0.67 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.73 8.10 -51.92 -0.42 1.31 16 38 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -28.26 314.62 -7.46 -35.72 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.12 Total: 10.90 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.65 Total: 1.14 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.38 Total: -27.81 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.26 -7.46 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.170 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds