Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48507 * 109.47271 * 269.99986 * 3 2 1 5 5 H 1.48498 * 109.47358 * 29.99766 * 3 2 1 6 6 H 1.48499 * 109.47404 * 149.99973 * 3 2 1 7 7 C 1.37878 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99757 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.28477 * 313.06342 * 9 7 2 11 11 C 1.53499 * 114.20726 * 180.02562 * 9 7 2 12 12 N 1.47067 * 87.98766 * 220.14832 * 11 9 7 13 13 C 1.34768 * 136.05903 * 207.08508 * 12 11 9 14 14 O 1.21278 * 120.00215 * 185.00544 * 13 12 11 15 15 C 1.50708 * 119.99999 * 4.99912 * 13 12 11 16 16 H 1.08999 * 109.46651 * 26.07856 * 15 13 12 17 17 C 1.52996 * 109.46828 * 146.07271 * 15 13 12 18 18 C 1.52997 * 109.47240 * 180.02562 * 17 15 13 19 19 C 1.53007 * 109.47229 * 300.00346 * 18 17 15 20 20 C 1.52999 * 109.46812 * 59.99468 * 19 18 17 21 21 H 1.09003 * 109.47273 * 60.00600 * 20 19 18 22 22 F 1.39904 * 109.46779 * 180.02562 * 20 19 18 23 23 C 1.52992 * 109.47439 * 300.00007 * 20 19 18 24 24 C 1.47062 * 87.88236 * 27.33958 * 12 11 9 25 25 H 0.96997 * 120.00131 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99680 * 46.94142 * 10 9 7 27 27 H 1.08995 * 113.47227 * 105.36288 * 11 9 7 28 28 H 1.09003 * 113.51734 * 334.93752 * 11 9 7 29 29 H 1.09003 * 109.47211 * 60.00348 * 17 15 13 30 30 H 1.09007 * 109.47472 * 300.00301 * 17 15 13 31 31 H 1.09003 * 109.47049 * 59.99864 * 18 17 15 32 32 H 1.09001 * 109.47730 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.47050 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.46712 * 299.99725 * 19 18 17 35 35 H 1.08997 * 109.47757 * 300.00434 * 23 20 19 36 36 H 1.09001 * 109.47511 * 180.02562 * 23 20 19 37 37 H 1.09008 * 113.46987 * 87.44092 * 24 12 11 38 38 H 1.09002 * 113.47151 * 217.87647 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1928 -2.5395 0.9611 11 6 2.1488 -3.7442 0.0028 12 7 1.2073 -4.3602 -0.9443 13 6 0.8319 -5.6150 -1.2618 14 8 0.0663 -5.8041 -2.1832 15 6 1.3636 -6.7832 -0.4721 16 1 1.6269 -6.4528 0.5327 17 6 0.2914 -7.8712 -0.3865 18 6 0.8308 -9.0570 0.4158 19 6 2.0735 -9.6190 -0.2778 20 6 3.1457 -8.5309 -0.3633 21 1 3.4088 -8.2002 0.6415 22 9 4.2817 -9.0446 -0.9980 23 6 2.6062 -7.3452 -1.1657 24 6 0.8605 -3.0046 -1.3968 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3709 -1.7538 0.9582 27 1 2.1879 -4.2504 0.9673 28 1 3.1376 -3.5679 -0.4207 29 1 0.0280 -8.2017 -1.3913 30 1 -0.5938 -7.4710 0.1080 31 1 1.0939 -8.7263 1.4205 32 1 0.0671 -9.8324 0.4764 33 1 2.4575 -10.4641 0.2936 34 1 1.8104 -9.9497 -1.2826 35 1 2.3432 -7.6758 -2.1704 36 1 3.3702 -6.5702 -1.2270 37 1 1.5093 -2.6323 -2.1898 38 1 -0.1982 -2.8806 -1.6248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335209760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = -139.249923 kcal Electronic energy + Delta-G solvation = -21483.597666 eV Core-core repulsion = 18046.939300 eV Total energy + Delta-G solvation = -3436.658366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.62776 -41.50873 -39.75360 -38.01392 -35.91002 -34.13192 -32.47231 -31.15397 -30.22221 -27.35078 -26.86200 -24.42512 -23.54255 -21.94803 -21.02769 -19.94186 -19.25922 -18.08031 -17.42262 -17.07413 -16.84596 -16.47364 -16.03042 -15.99990 -15.85583 -15.44617 -14.87899 -14.83189 -14.46143 -14.14571 -13.79226 -13.63248 -13.47040 -13.41982 -12.81846 -12.76236 -12.64716 -12.34140 -12.23842 -12.18634 -12.07777 -11.75018 -11.66013 -11.38067 -11.22929 -10.80474 -10.54268 -10.26737 -9.61763 -8.28479 -6.46391 1.46763 1.49509 1.55446 1.59511 1.93316 2.39727 2.94458 3.24060 3.46653 3.55498 3.69089 3.81622 3.87081 4.01885 4.14054 4.16027 4.27196 4.32104 4.47477 4.50644 4.52841 4.61713 4.72202 4.85109 4.88883 4.90900 5.00004 5.05116 5.14950 5.16723 5.19611 5.23681 5.41831 5.72100 5.88004 6.61383 6.87543 7.11406 7.28225 7.43913 8.77723 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032700 B = 0.004349 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.071689 B = 6436.051934 C = 6795.623774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.027 3.973 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.219 3.781 10 O -0.583 6.583 11 C 0.115 3.885 12 N -0.637 5.637 13 C 0.530 3.470 14 O -0.601 6.601 15 C -0.085 4.085 16 H 0.108 0.892 17 C -0.106 4.106 18 C -0.105 4.105 19 C -0.142 4.142 20 C 0.096 3.904 21 H 0.109 0.891 22 F -0.226 7.226 23 C -0.128 4.128 24 C 0.075 3.925 25 H 0.275 0.725 26 H 0.388 0.612 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -13.877 3.234 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.173 4.173 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.178 3.822 10 O -0.396 6.396 11 C -0.007 4.007 12 N -0.370 5.370 13 C 0.322 3.678 14 O -0.483 6.483 15 C -0.106 4.106 16 H 0.126 0.874 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.180 4.180 20 C 0.060 3.940 21 H 0.127 0.873 22 F -0.206 7.206 23 C -0.167 4.167 24 C -0.049 4.049 25 H 0.085 0.915 26 H 0.244 0.756 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.650 -14.663 2.837 15.968 hybrid contribution -0.355 1.810 -0.758 1.994 sum 5.294 -12.853 2.079 14.055 Atomic orbital electron populations 1.69356 1.07529 1.28938 1.50632 1.25864 0.95684 1.03119 0.92661 0.85322 0.78721 0.77964 0.78242 1.20218 1.21039 1.18567 1.21737 0.94458 0.90415 1.52163 0.89921 1.19876 0.85621 0.92672 0.84071 1.85982 1.45840 1.48321 1.59438 1.23379 0.93802 0.90821 0.92669 1.49906 1.42378 1.04524 1.40146 1.20937 0.80569 0.82825 0.83494 1.90606 1.39593 1.85088 1.33057 1.21139 0.97090 0.92426 0.99923 0.87377 1.21470 0.96545 0.94856 1.01526 1.21449 0.97041 0.96604 0.99128 1.22150 0.95040 0.97983 1.02826 1.21662 0.82370 0.93350 0.96595 0.87311 1.92789 1.54158 1.88699 1.84996 1.21971 0.96196 0.98573 0.99917 1.24089 0.98861 0.79640 1.02294 0.91495 0.75641 0.89449 0.87095 0.92136 0.92182 0.89727 0.89122 0.88542 0.91301 0.91571 0.90473 0.90059 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.84 11.01 21.45 0.24 -47.61 16 2 C 0.03 1.31 5.39 84.66 0.46 1.77 16 3 Si 0.97 39.01 29.54 68.60 2.03 41.03 16 4 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.55 -26.70 8.70 25.60 0.22 -26.47 16 8 H 0.08 3.76 7.81 -2.91 -0.02 3.73 16 9 C 0.22 10.31 1.58 -11.12 -0.02 10.29 16 10 O -0.58 -29.93 13.55 -148.98 -2.02 -31.95 16 11 C 0.12 4.32 7.67 83.17 0.64 4.95 16 12 N -0.64 -26.41 3.69 -858.30 -3.16 -29.58 16 13 C 0.53 21.02 7.09 87.66 0.62 21.64 16 14 O -0.60 -28.45 17.03 -3.02 -0.05 -28.50 16 15 C -0.08 -2.34 2.41 -11.54 -0.03 -2.37 16 16 H 0.11 2.64 7.64 -2.39 -0.02 2.62 16 17 C -0.11 -2.60 4.85 30.59 0.15 -2.46 16 18 C -0.10 -1.66 5.92 30.60 0.18 -1.48 16 19 C -0.14 -2.24 5.66 30.60 0.17 -2.07 16 20 C 0.10 1.82 3.88 30.59 0.12 1.94 16 21 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 22 F -0.23 -5.23 17.08 44.97 0.77 -4.46 16 23 C -0.13 -3.11 4.92 30.59 0.15 -2.96 16 24 C 0.07 3.52 8.05 83.26 0.67 4.19 16 25 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 26 H 0.39 20.80 6.33 -74.06 -0.47 20.33 16 27 H 0.09 2.91 7.86 -2.39 -0.02 2.89 16 28 H 0.11 3.63 8.10 -2.39 -0.02 3.61 16 29 H 0.06 1.68 7.85 -2.39 -0.02 1.66 16 30 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 3.69 8.10 -2.38 -0.02 3.67 16 38 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.85 314.62 1.72 -60.12 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.59 Total: 33.98 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 3.34 Total: 6.97 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.93 Total: -77.18 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -2.07 Total: -60.46 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.77 Total: -4.46 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.85 1.72 -60.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.125 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds