Wall clock time and date at job start Mon Mar 30 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47073 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47223 * 240.00294 * 3 2 1 6 6 H 1.48504 * 109.46762 * 120.00095 * 3 2 1 7 7 C 1.37869 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00357 * 14.93364 * 7 2 1 9 9 C 1.50706 * 120.00044 * 194.94242 * 7 2 1 10 10 O 1.42901 * 112.94682 * 65.58172 * 9 7 2 11 11 C 1.53948 * 113.73548 * 293.99760 * 9 7 2 12 12 N 1.47819 * 86.03339 * 222.07970 * 11 9 7 13 13 C 1.34775 * 134.45759 * 204.64175 * 12 11 9 14 14 O 1.21281 * 119.99716 * 184.07404 * 13 12 11 15 15 C 1.50697 * 120.00054 * 4.07116 * 13 12 11 16 16 H 1.08996 * 109.47114 * 333.97568 * 15 13 12 17 17 C 1.52997 * 109.47466 * 213.96796 * 15 13 12 18 18 C 1.52998 * 109.47081 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47083 * 60.00485 * 18 17 15 20 20 C 1.52996 * 109.47137 * 299.99758 * 19 18 17 21 21 H 1.09004 * 109.46814 * 300.00167 * 20 19 18 22 22 F 1.39894 * 109.47055 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47231 * 59.99686 * 20 19 18 24 24 C 1.47585 * 91.04991 * 24.54767 * 12 11 9 25 25 H 0.96994 * 119.99756 * 174.92296 * 1 2 3 26 26 H 0.96700 * 113.99874 * 305.98562 * 10 9 7 27 27 H 1.08995 * 113.77067 * 336.33999 * 11 9 7 28 28 H 1.09000 * 113.77346 * 107.74733 * 11 9 7 29 29 H 1.08998 * 109.47118 * 300.00689 * 17 15 13 30 30 H 1.08999 * 109.46751 * 60.00117 * 17 15 13 31 31 H 1.09003 * 109.46706 * 180.02562 * 18 17 15 32 32 H 1.08998 * 109.47679 * 300.00311 * 18 17 15 33 33 H 1.08996 * 109.46940 * 59.99944 * 19 18 17 34 34 H 1.09001 * 109.46663 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.47371 * 180.02562 * 23 20 19 36 36 H 1.09004 * 109.46829 * 60.00490 * 23 20 19 37 37 H 1.08994 * 113.76954 * 221.14624 * 24 12 11 38 38 H 1.09005 * 113.76786 * 89.75086 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.4918 -2.1135 -0.2420 9 6 3.4733 -1.2163 0.3360 10 8 3.7408 -0.8402 1.6884 11 6 4.3564 -0.4907 -0.6953 12 7 5.2899 -1.6266 -0.5426 13 6 6.6145 -1.7915 -0.7290 14 8 7.1146 -2.8876 -0.5898 15 6 7.4741 -0.6140 -1.1104 16 1 6.8651 0.1286 -1.6260 17 6 8.5993 -1.0822 -2.0354 18 6 9.4723 0.1133 -2.4221 19 6 10.0747 0.7342 -1.1602 20 6 8.9496 1.2025 -0.2351 21 1 8.3409 1.9453 -0.7507 22 9 9.5004 1.7707 0.9184 23 6 8.0765 0.0071 0.1515 24 6 4.1900 -2.5064 -0.1018 25 1 -0.4849 -0.8367 -0.0743 26 1 3.3627 0.0131 1.9415 27 1 3.9078 -0.4210 -1.6862 28 1 4.7566 0.4590 -0.3404 29 1 9.2082 -1.8247 -1.5198 30 1 8.1701 -1.5250 -2.9342 31 1 10.2736 -0.2203 -3.0815 32 1 8.8636 0.8562 -2.9375 33 1 10.6834 -0.0086 -0.6448 34 1 10.6970 1.5856 -1.4358 35 1 7.2747 0.3407 0.8102 36 1 8.6852 -0.7358 0.6670 37 1 4.4575 -3.1631 0.7260 38 1 3.6923 -3.0301 -0.9181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335209761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:47 Heat of formation + Delta-G solvation = -117.494471 kcal Electronic energy + Delta-G solvation = -21818.526442 eV Core-core repulsion = 18382.811464 eV Total energy + Delta-G solvation = -3435.714979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.71130 -40.11164 -38.46127 -36.82310 -34.25711 -32.66829 -31.46684 -30.26020 -28.70466 -25.94653 -25.03119 -23.26480 -22.65877 -20.46763 -19.84081 -18.60417 -18.01684 -16.89741 -16.27609 -15.97529 -15.57368 -15.36701 -14.94560 -14.87406 -14.43172 -14.04629 -13.71901 -13.57564 -13.16059 -12.76202 -12.71354 -12.63788 -12.24492 -12.02713 -11.66491 -11.45029 -11.27900 -11.23318 -10.88008 -10.80507 -10.73171 -10.47481 -10.38809 -10.02083 -9.52854 -9.36321 -9.05998 -8.52069 -8.06538 -6.77590 -4.51177 2.94340 3.04229 3.11559 3.19488 3.37514 4.13542 4.28989 4.32556 4.46650 4.66713 4.75201 4.83120 4.89401 5.01236 5.12066 5.18762 5.21331 5.36821 5.42295 5.47992 5.67895 5.75211 5.81607 5.86936 5.91426 5.97668 6.02014 6.06412 6.17621 6.23010 6.26096 6.40397 6.66830 7.51079 8.04031 8.22057 8.52505 8.54547 8.66465 9.24451 10.58789 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.005873 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.258784 B = 4766.608204 C = 5340.597512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.036 3.964 3 Si 1.039 2.961 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.618 4.618 8 H 0.070 0.930 9 C 0.200 3.800 10 O -0.566 6.566 11 C 0.056 3.944 12 N -0.631 5.631 13 C 0.535 3.465 14 O -0.557 6.557 15 C -0.097 4.097 16 H 0.089 0.911 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.094 3.906 21 H 0.085 0.915 22 F -0.214 7.214 23 C -0.133 4.133 24 C 0.128 3.872 25 H 0.274 0.726 26 H 0.367 0.633 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.184 4.360 -4.627 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.172 4.172 3 Si 0.867 3.133 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.656 4.656 8 H 0.088 0.912 9 C 0.159 3.841 10 O -0.374 6.374 11 C -0.067 4.067 12 N -0.365 5.365 13 C 0.325 3.675 14 O -0.437 6.437 15 C -0.119 4.119 16 H 0.107 0.893 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.183 4.183 20 C 0.058 3.942 21 H 0.103 0.897 22 F -0.195 7.195 23 C -0.172 4.172 24 C 0.006 3.994 25 H 0.085 0.915 26 H 0.216 0.784 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.755 4.833 -4.491 17.081 hybrid contribution -0.220 -1.056 -0.095 1.083 sum 15.535 3.777 -4.586 16.632 Atomic orbital electron populations 1.70806 1.06822 1.31513 1.42654 1.25828 0.96351 1.02375 0.92671 0.84157 0.75536 0.76318 0.77329 1.20313 1.19915 1.20595 1.22185 0.92814 0.96846 1.53711 0.91191 1.20394 0.93497 0.90482 0.79718 1.86376 1.79405 1.42044 1.29542 1.24722 0.88764 0.90402 1.02811 1.50228 1.04963 1.16108 1.65156 1.20061 0.81094 0.89611 0.76782 1.90641 1.72849 1.27046 1.53153 1.21135 0.96822 0.96685 0.97240 0.89250 1.21454 0.95964 0.97904 0.99013 1.21482 0.99469 0.97648 0.96657 1.22148 0.97735 1.01759 0.96678 1.21550 0.94707 0.95006 0.82914 0.89742 1.92809 1.87452 1.86510 1.52697 1.22017 1.00206 0.97529 0.97416 1.23222 0.83046 0.95098 0.98011 0.91502 0.78360 0.88636 0.91681 0.90360 0.91241 0.90819 0.91437 0.90566 0.90743 0.89985 0.89937 0.90872 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 13.70 55.43 0.76 -23.92 16 2 C 0.04 0.92 5.43 -17.82 -0.10 0.83 16 3 Si 1.04 21.54 24.53 -169.99 -4.17 17.37 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.27 -5.09 6.50 56.52 0.37 -4.72 16 6 H -0.28 -5.24 5.84 56.52 0.33 -4.91 16 7 C -0.62 -15.66 9.03 -34.44 -0.31 -15.97 16 8 H 0.07 1.92 8.06 -52.48 -0.42 1.49 16 9 C 0.20 4.45 1.07 -90.84 -0.10 4.36 16 10 O -0.57 -12.82 13.47 -35.23 -0.47 -13.30 16 11 C 0.06 1.08 5.07 -2.83 -0.01 1.07 16 12 N -0.63 -12.38 3.61 -178.10 -0.64 -13.02 16 13 C 0.54 9.96 7.06 -10.99 -0.08 9.89 16 14 O -0.56 -11.98 16.98 5.56 0.09 -11.89 16 15 C -0.10 -1.36 2.41 -91.77 -0.22 -1.58 16 16 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 17 C -0.11 -1.25 4.85 -26.73 -0.13 -1.38 16 18 C -0.11 -1.02 5.92 -26.73 -0.16 -1.17 16 19 C -0.15 -1.35 5.66 -26.73 -0.15 -1.50 16 20 C 0.09 1.06 3.87 -26.73 -0.10 0.95 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 22 F -0.21 -2.84 17.08 2.25 0.04 -2.80 16 23 C -0.13 -1.78 4.92 -26.73 -0.13 -1.92 16 24 C 0.13 2.68 8.23 -2.97 -0.02 2.65 16 25 H 0.27 7.65 8.73 -40.82 -0.36 7.30 16 26 H 0.37 7.69 6.13 45.56 0.28 7.97 16 27 H 0.10 1.80 7.94 -51.93 -0.41 1.38 16 28 H 0.06 1.15 6.88 -51.93 -0.36 0.79 16 29 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -29.57 307.01 -6.49 -36.06 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.20 Total: 10.66 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.52 Total: -3.78 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.12 Total: -36.94 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.38 Total: -25.19 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.17 Total: 17.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.57 -6.49 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.435 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds