Wall clock time and date at job start Mon Mar 30 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47073 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47223 * 240.00294 * 3 2 1 6 6 H 1.48504 * 109.46762 * 120.00095 * 3 2 1 7 7 C 1.37869 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00357 * 14.93364 * 7 2 1 9 9 C 1.50706 * 120.00044 * 194.94242 * 7 2 1 10 10 O 1.42901 * 112.94682 * 65.58172 * 9 7 2 11 11 C 1.53948 * 113.73548 * 293.99760 * 9 7 2 12 12 N 1.47819 * 86.03339 * 222.07970 * 11 9 7 13 13 C 1.34775 * 134.45759 * 204.64175 * 12 11 9 14 14 O 1.21281 * 119.99716 * 184.07404 * 13 12 11 15 15 C 1.50697 * 120.00054 * 4.07116 * 13 12 11 16 16 H 1.08996 * 109.47114 * 333.97568 * 15 13 12 17 17 C 1.52997 * 109.47466 * 213.96796 * 15 13 12 18 18 C 1.52998 * 109.47081 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47083 * 60.00485 * 18 17 15 20 20 C 1.52996 * 109.47137 * 299.99758 * 19 18 17 21 21 H 1.09004 * 109.46814 * 300.00167 * 20 19 18 22 22 F 1.39894 * 109.47055 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47231 * 59.99686 * 20 19 18 24 24 C 1.47585 * 91.04991 * 24.54767 * 12 11 9 25 25 H 0.96994 * 119.99756 * 174.92296 * 1 2 3 26 26 H 0.96700 * 113.99874 * 305.98562 * 10 9 7 27 27 H 1.08995 * 113.77067 * 336.33999 * 11 9 7 28 28 H 1.09000 * 113.77346 * 107.74733 * 11 9 7 29 29 H 1.08998 * 109.47118 * 300.00689 * 17 15 13 30 30 H 1.08999 * 109.46751 * 60.00117 * 17 15 13 31 31 H 1.09003 * 109.46706 * 180.02562 * 18 17 15 32 32 H 1.08998 * 109.47679 * 300.00311 * 18 17 15 33 33 H 1.08996 * 109.46940 * 59.99944 * 19 18 17 34 34 H 1.09001 * 109.46663 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.47371 * 180.02562 * 23 20 19 36 36 H 1.09004 * 109.46829 * 60.00490 * 23 20 19 37 37 H 1.08994 * 113.76954 * 221.14624 * 24 12 11 38 38 H 1.09005 * 113.76786 * 89.75086 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.4918 -2.1135 -0.2420 9 6 3.4733 -1.2163 0.3360 10 8 3.7408 -0.8402 1.6884 11 6 4.3564 -0.4907 -0.6953 12 7 5.2899 -1.6266 -0.5426 13 6 6.6145 -1.7915 -0.7290 14 8 7.1146 -2.8876 -0.5898 15 6 7.4741 -0.6140 -1.1104 16 1 6.8651 0.1286 -1.6260 17 6 8.5993 -1.0822 -2.0354 18 6 9.4723 0.1133 -2.4221 19 6 10.0747 0.7342 -1.1602 20 6 8.9496 1.2025 -0.2351 21 1 8.3409 1.9453 -0.7507 22 9 9.5004 1.7707 0.9184 23 6 8.0765 0.0071 0.1515 24 6 4.1900 -2.5064 -0.1018 25 1 -0.4849 -0.8367 -0.0743 26 1 3.3627 0.0131 1.9415 27 1 3.9078 -0.4210 -1.6862 28 1 4.7566 0.4590 -0.3404 29 1 9.2082 -1.8247 -1.5198 30 1 8.1701 -1.5250 -2.9342 31 1 10.2736 -0.2203 -3.0815 32 1 8.8636 0.8562 -2.9375 33 1 10.6834 -0.0086 -0.6448 34 1 10.6970 1.5856 -1.4358 35 1 7.2747 0.3407 0.8102 36 1 8.6852 -0.7358 0.6670 37 1 4.4575 -3.1631 0.7260 38 1 3.6923 -3.0301 -0.9181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335209761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:46 Heat of formation + Delta-G solvation = -138.923299 kcal Electronic energy + Delta-G solvation = -21819.455666 eV Core-core repulsion = 18382.811464 eV Total energy + Delta-G solvation = -3436.644203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.63467 -41.60173 -39.85300 -38.06120 -36.00413 -34.65213 -32.49436 -31.16398 -30.29788 -27.56568 -26.78812 -24.37563 -23.55054 -21.80678 -21.07307 -20.07446 -19.92206 -18.28407 -17.68484 -17.15132 -16.90900 -16.66418 -16.21683 -15.91222 -15.60493 -15.53569 -15.20007 -14.76259 -14.54102 -14.38760 -14.06037 -13.84235 -13.63033 -13.45175 -12.94071 -12.64383 -12.51548 -12.34935 -12.14468 -12.07786 -11.80229 -11.69388 -11.63287 -11.29136 -11.25627 -10.95923 -10.77058 -10.30594 -9.72299 -8.83269 -6.59651 1.42934 1.50199 1.50663 1.63261 1.83869 2.44247 2.90205 3.13303 3.43515 3.46997 3.54999 3.73793 3.80860 3.83143 4.01655 4.15713 4.27321 4.29016 4.32673 4.32920 4.50872 4.51684 4.56012 4.61275 4.73478 4.88731 4.96465 4.99786 5.05332 5.15141 5.16999 5.20867 5.42693 5.61849 5.90587 6.39682 6.70712 6.94166 7.04516 7.27147 8.51782 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.005873 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.258784 B = 4766.608204 C = 5340.597512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 1.068 2.932 4 H -0.289 1.289 5 H -0.229 1.229 6 H -0.246 1.246 7 C -0.623 4.623 8 H 0.030 0.970 9 C 0.191 3.809 10 O -0.574 6.574 11 C 0.070 3.930 12 N -0.632 5.632 13 C 0.529 3.471 14 O -0.593 6.593 15 C -0.089 4.089 16 H 0.113 0.887 17 C -0.104 4.104 18 C -0.105 4.105 19 C -0.143 4.143 20 C 0.094 3.906 21 H 0.110 0.890 22 F -0.227 7.227 23 C -0.132 4.132 24 C 0.120 3.880 25 H 0.257 0.743 26 H 0.374 0.626 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.788 7.005 -5.896 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.887 3.113 4 H -0.216 1.216 5 H -0.153 1.153 6 H -0.171 1.171 7 C -0.661 4.661 8 H 0.048 0.952 9 C 0.150 3.850 10 O -0.383 6.383 11 C -0.052 4.052 12 N -0.366 5.366 13 C 0.321 3.679 14 O -0.474 6.474 15 C -0.110 4.110 16 H 0.131 0.869 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.180 4.180 20 C 0.058 3.942 21 H 0.128 0.872 22 F -0.208 7.208 23 C -0.170 4.170 24 C -0.002 4.002 25 H 0.066 0.934 26 H 0.225 0.775 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.381 7.455 -5.764 20.656 hybrid contribution -1.097 -2.047 0.360 2.350 sum 17.284 5.408 -5.405 18.900 Atomic orbital electron populations 1.70959 1.08301 1.30509 1.45631 1.27379 0.96067 1.06325 0.91100 0.83908 0.75443 0.71276 0.80680 1.21553 1.15253 1.17056 1.22276 0.94856 0.95521 1.53463 0.95200 1.20356 0.92038 0.92309 0.80272 1.86361 1.79265 1.42801 1.29862 1.24571 0.87559 0.91092 1.02024 1.50240 1.05277 1.15677 1.65371 1.21015 0.80707 0.90649 0.75561 1.90623 1.73263 1.29004 1.54537 1.21204 0.96852 0.94957 0.98005 0.86880 1.21473 0.95484 0.99043 0.98202 1.21458 0.99614 0.96505 0.96703 1.22153 0.97225 1.02349 0.96316 1.21703 0.95309 0.94449 0.82695 0.87239 1.92787 1.87656 1.86602 1.53750 1.21990 1.00060 0.98193 0.96805 1.23176 0.84123 0.94968 0.97973 0.93368 0.77508 0.87623 0.88746 0.92220 0.91237 0.89008 0.89495 0.91424 0.88638 0.91101 0.91685 0.92036 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.59 13.70 21.45 0.29 -52.30 16 2 C -0.01 -0.40 5.43 84.65 0.46 0.06 16 3 Si 1.07 40.47 24.53 68.60 1.68 42.15 16 4 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.23 -7.10 6.50 99.48 0.65 -6.46 16 6 H -0.25 -7.98 5.84 99.48 0.58 -7.40 16 7 C -0.62 -32.09 9.03 25.60 0.23 -31.86 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.19 8.33 1.07 -10.88 -0.01 8.32 16 10 O -0.57 -25.22 13.47 -148.98 -2.01 -27.23 16 11 C 0.07 2.47 5.07 86.44 0.44 2.91 16 12 N -0.63 -23.77 3.61 -839.61 -3.03 -26.80 16 13 C 0.53 18.92 7.06 87.66 0.62 19.54 16 14 O -0.59 -25.40 16.98 -3.03 -0.05 -25.45 16 15 C -0.09 -2.22 2.41 -11.54 -0.03 -2.25 16 16 H 0.11 2.31 7.70 -2.39 -0.02 2.30 16 17 C -0.10 -2.17 4.85 30.59 0.15 -2.02 16 18 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 19 C -0.14 -2.09 5.66 30.59 0.17 -1.91 16 20 C 0.09 1.76 3.87 30.59 0.12 1.88 16 21 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 22 F -0.23 -5.39 17.08 44.97 0.77 -4.62 16 23 C -0.13 -3.20 4.92 30.59 0.15 -3.05 16 24 C 0.12 5.05 8.23 86.48 0.71 5.76 16 25 H 0.26 15.08 8.73 -92.71 -0.81 14.27 16 26 H 0.37 14.81 6.13 -74.06 -0.45 14.36 16 27 H 0.11 3.57 7.94 -2.39 -0.02 3.55 16 28 H 0.09 2.83 6.88 -2.39 -0.02 2.81 16 29 H 0.06 1.47 7.85 -2.39 -0.02 1.45 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.09 3.81 8.09 -2.38 -0.02 3.79 16 Total: -1.00 -66.67 307.01 1.23 -65.45 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.38 Total: 32.64 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 3.19 Total: -3.84 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.74 Total: -79.10 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -2.06 Total: -52.68 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.62 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.68 Total: 42.15 kcal Total: -66.67 1.23 -65.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335209761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.478 kcal (2) G-P(sol) polarization free energy of solvation -66.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds