Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00140 * 2 1 4 4 C 1.52999 * 109.47139 * 293.95152 * 3 2 1 5 5 C 1.52996 * 109.47030 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47020 * 180.02562 * 5 4 3 7 7 C 1.76202 * 99.99954 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99729 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99995 * 180.02562 * 7 6 5 10 10 N 1.31632 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47056 * 59.99882 * 11 9 7 13 13 H 1.48506 * 109.47078 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47232 * 300.00087 * 11 9 7 15 15 C 1.46904 * 110.99878 * 123.95524 * 2 1 3 16 16 C 1.50698 * 109.47064 * 66.04073 * 15 2 1 17 17 N 1.31071 * 126.66421 * 269.68677 * 16 15 2 18 18 N 1.28838 * 107.99475 * 180.26637 * 17 16 15 19 19 N 1.28738 * 109.39735 * 359.97438 * 18 17 16 20 20 N 1.29019 * 108.80937 * 359.97438 * 19 18 17 21 21 C 1.46506 * 126.44202 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.46919 * 296.04760 * 1 2 3 23 23 H 1.09004 * 109.46558 * 56.04397 * 1 2 3 24 24 H 1.08992 * 109.47401 * 176.04742 * 1 2 3 25 25 H 1.08994 * 109.46979 * 53.95387 * 3 2 1 26 26 H 1.08998 * 109.46726 * 173.95455 * 3 2 1 27 27 H 1.09003 * 109.47024 * 300.00497 * 4 3 2 28 28 H 1.09005 * 109.46766 * 60.00231 * 4 3 2 29 29 H 1.09003 * 109.47025 * 299.99963 * 5 4 3 30 30 H 1.08998 * 109.46865 * 60.00285 * 5 4 3 31 31 H 0.97001 * 119.99655 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.46884 * 306.04821 * 15 2 1 33 33 H 1.08992 * 109.47094 * 186.04361 * 15 2 1 34 34 H 1.09004 * 109.46413 * 270.02647 * 21 20 19 35 35 H 1.08997 * 109.46712 * 30.02271 * 21 20 19 36 36 H 1.08994 * 109.47153 * 150.02583 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1805 3.4855 -1.3185 6 16 1.7493 4.2973 -2.8777 7 6 2.4822 5.8776 -2.6128 8 1 3.0020 6.0837 -1.6888 9 6 2.3915 6.8576 -3.5916 10 7 1.7584 6.6062 -4.7179 11 14 3.1691 8.5327 -3.3110 12 1 4.6300 8.3711 -3.0994 13 1 2.9335 9.3929 -4.4984 14 1 2.5624 9.1655 -2.1124 15 6 1.9955 -0.7660 1.1376 16 6 1.6368 -2.2204 0.9729 17 7 0.5563 -2.8151 1.4163 18 7 0.6192 -4.0573 1.0803 19 7 1.7117 -4.2704 0.4335 20 7 2.3661 -3.1620 0.3457 21 6 3.6608 -2.9654 -0.3114 22 1 -0.3633 0.4513 0.9233 23 1 -0.3632 0.5740 -0.8525 24 1 -0.3634 -1.0251 -0.0708 25 1 1.5612 1.9273 0.8309 26 1 3.0798 1.3443 0.1082 27 1 2.0659 1.5014 -2.1492 28 1 0.5473 2.0845 -1.4265 29 1 1.7465 4.0417 -0.4876 30 1 3.2648 3.4580 -1.2105 31 1 1.6947 7.2911 -5.4017 32 1 1.5611 -0.3873 2.0628 33 1 3.0797 -0.6612 1.1756 34 1 4.4623 -3.1309 0.4086 35 1 3.7609 -3.6718 -1.1354 36 1 3.7222 -1.9474 -0.6959 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336679299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = 114.055035 kcal Electronic energy + Delta-G solvation = -17943.000206 eV Core-core repulsion = 15012.291551 eV Total energy + Delta-G solvation = -2930.708655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.38316 -38.22547 -35.87890 -33.86687 -32.47691 -32.10930 -29.01119 -27.98018 -26.90897 -25.58585 -23.78501 -23.45419 -21.66304 -20.74998 -17.67927 -17.64335 -17.46554 -15.91763 -15.83235 -15.62031 -14.83901 -14.59191 -14.27206 -14.05145 -13.96890 -13.56518 -12.94382 -12.78332 -12.62681 -12.22115 -12.09506 -11.92163 -11.65303 -11.40673 -11.34820 -11.09237 -11.08022 -10.87597 -10.69514 -10.44826 -10.31256 -9.60987 -9.08808 -8.70675 -8.35280 -6.57351 -6.26276 -3.97156 0.96798 1.75346 1.99386 3.17374 3.20171 3.25114 3.39280 3.60698 3.85411 3.95729 4.18951 4.39748 4.53379 4.81050 4.91625 4.94382 5.06861 5.09914 5.17601 5.21487 5.30832 5.46295 5.48218 5.52664 5.60308 5.75751 5.86599 5.91318 5.94621 6.24933 6.46093 6.59335 6.69754 6.79110 7.56452 8.32525 8.38997 9.19885 10.81819 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.048534 B = 0.002850 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.777156 B = 9823.132273 C = 9913.409319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.061 3.939 4 C -0.094 4.094 5 C -0.113 4.113 6 S -0.131 6.131 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.131 3.869 16 C 0.198 3.802 17 N -0.302 5.302 18 N -0.078 5.078 19 N -0.098 5.098 20 N -0.298 5.298 21 C 0.077 3.923 22 H 0.035 0.965 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -15.446 10.703 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.068 4.068 4 C -0.133 4.133 5 C -0.263 4.263 6 S 0.097 5.903 7 C -0.666 4.666 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.000 4.000 16 C -0.081 4.081 17 N -0.152 5.152 18 N -0.072 5.072 19 N -0.084 5.084 20 N -0.100 5.100 21 C -0.064 4.064 22 H 0.053 0.947 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.258 -17.114 9.374 19.784 hybrid contribution 1.620 2.571 1.636 3.451 sum 4.877 -14.544 11.010 18.882 Atomic orbital electron populations 1.22537 0.86068 1.02678 1.01762 1.62018 1.09440 1.14995 1.40064 1.22257 0.99985 0.85883 0.98673 1.21291 1.01620 0.94154 0.96213 1.23228 1.02258 0.97354 1.03425 1.84668 1.74400 1.13334 1.17888 1.22642 1.40653 0.97539 1.05781 0.91010 1.25015 0.95196 0.99032 0.94523 1.70010 1.39888 1.34466 1.06131 0.86227 0.79562 0.81886 0.77876 1.19936 1.20800 1.19935 1.20541 1.01535 0.82803 0.95126 1.25906 0.89695 0.96322 0.96153 1.75022 1.18134 1.00757 1.21284 1.78609 1.10241 1.08470 1.09901 1.78873 1.03184 1.08688 1.17701 1.48360 1.18871 1.05986 1.36793 1.22472 0.78406 1.06431 0.99105 0.94666 0.90043 0.91430 0.94063 0.90460 0.90741 0.91376 0.92236 0.92091 0.92211 0.90241 0.87959 0.88568 0.87446 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.17 60.07 0.55 0.74 16 2 N -0.54 -5.43 4.75 -244.37 -1.16 -6.59 16 3 C 0.06 0.65 4.96 -3.82 -0.02 0.63 16 4 C -0.09 -1.37 5.15 -26.73 -0.14 -1.50 16 5 C -0.11 -2.11 5.67 37.16 0.21 -1.90 16 6 S -0.13 -3.32 21.44 -107.50 -2.30 -5.62 16 7 C -0.52 -14.48 9.50 30.94 0.29 -14.18 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 10 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 11 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.13 1.05 5.10 -4.97 -0.03 1.03 16 16 C 0.20 2.06 6.74 -155.43 -1.05 1.01 16 17 N -0.30 -4.03 11.68 32.70 0.38 -3.64 16 18 N -0.08 -1.12 13.43 60.35 0.81 -0.31 16 19 N -0.10 -1.22 13.29 60.35 0.80 -0.42 16 20 N -0.30 -2.83 3.75 -65.02 -0.24 -3.07 16 21 C 0.08 0.34 11.09 59.85 0.66 1.01 16 22 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.94 6.30 -51.93 -0.33 0.62 16 24 H 0.07 0.81 6.76 -51.93 -0.35 0.46 16 25 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.08 0.72 7.93 -51.93 -0.41 0.30 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16 29 H 0.06 1.10 8.14 -51.91 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.10 0.53 7.61 -51.93 -0.40 0.14 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.41 7.76 -51.93 -0.40 0.00 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -33.72 319.35 -5.95 -39.66 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.15 Total: -4.74 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.39 Total: -11.27 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.32 Total: -38.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.30 Total: -5.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.72 -5.95 -39.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.720 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds