Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00140 * 2 1 4 4 C 1.52999 * 109.47139 * 293.95152 * 3 2 1 5 5 C 1.52996 * 109.47030 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47020 * 180.02562 * 5 4 3 7 7 C 1.76202 * 99.99954 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99729 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99995 * 180.02562 * 7 6 5 10 10 N 1.31632 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47056 * 59.99882 * 11 9 7 13 13 H 1.48506 * 109.47078 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47232 * 300.00087 * 11 9 7 15 15 C 1.46904 * 110.99878 * 123.95524 * 2 1 3 16 16 C 1.50698 * 109.47064 * 66.04073 * 15 2 1 17 17 N 1.31071 * 126.66421 * 269.68677 * 16 15 2 18 18 N 1.28838 * 107.99475 * 180.26637 * 17 16 15 19 19 N 1.28738 * 109.39735 * 359.97438 * 18 17 16 20 20 N 1.29019 * 108.80937 * 359.97438 * 19 18 17 21 21 C 1.46506 * 126.44202 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.46919 * 296.04760 * 1 2 3 23 23 H 1.09004 * 109.46558 * 56.04397 * 1 2 3 24 24 H 1.08992 * 109.47401 * 176.04742 * 1 2 3 25 25 H 1.08994 * 109.46979 * 53.95387 * 3 2 1 26 26 H 1.08998 * 109.46726 * 173.95455 * 3 2 1 27 27 H 1.09003 * 109.47024 * 300.00497 * 4 3 2 28 28 H 1.09005 * 109.46766 * 60.00231 * 4 3 2 29 29 H 1.09003 * 109.47025 * 299.99963 * 5 4 3 30 30 H 1.08998 * 109.46865 * 60.00285 * 5 4 3 31 31 H 0.97001 * 119.99655 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.46884 * 306.04821 * 15 2 1 33 33 H 1.08992 * 109.47094 * 186.04361 * 15 2 1 34 34 H 1.09004 * 109.46413 * 270.02647 * 21 20 19 35 35 H 1.08997 * 109.46712 * 30.02271 * 21 20 19 36 36 H 1.08994 * 109.47153 * 150.02583 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1805 3.4855 -1.3185 6 16 1.7493 4.2973 -2.8777 7 6 2.4822 5.8776 -2.6128 8 1 3.0020 6.0837 -1.6888 9 6 2.3915 6.8576 -3.5916 10 7 1.7584 6.6062 -4.7179 11 14 3.1691 8.5327 -3.3110 12 1 4.6300 8.3711 -3.0994 13 1 2.9335 9.3929 -4.4984 14 1 2.5624 9.1655 -2.1124 15 6 1.9955 -0.7660 1.1376 16 6 1.6368 -2.2204 0.9729 17 7 0.5563 -2.8151 1.4163 18 7 0.6192 -4.0573 1.0803 19 7 1.7117 -4.2704 0.4335 20 7 2.3661 -3.1620 0.3457 21 6 3.6608 -2.9654 -0.3114 22 1 -0.3633 0.4513 0.9233 23 1 -0.3632 0.5740 -0.8525 24 1 -0.3634 -1.0251 -0.0708 25 1 1.5612 1.9273 0.8309 26 1 3.0798 1.3443 0.1082 27 1 2.0659 1.5014 -2.1492 28 1 0.5473 2.0845 -1.4265 29 1 1.7465 4.0417 -0.4876 30 1 3.2648 3.4580 -1.2105 31 1 1.6947 7.2911 -5.4017 32 1 1.5611 -0.3873 2.0628 33 1 3.0797 -0.6612 1.1756 34 1 4.4623 -3.1309 0.4086 35 1 3.7609 -3.6718 -1.1354 36 1 3.7222 -1.9474 -0.6959 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336679299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = 89.650879 kcal Electronic energy + Delta-G solvation = -17944.058449 eV Core-core repulsion = 15012.291551 eV Total energy + Delta-G solvation = -2931.766899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.21640 -39.06481 -36.61757 -34.90521 -34.56403 -33.13929 -29.62964 -28.71709 -28.11097 -27.50441 -24.76854 -24.34778 -22.53378 -21.75270 -19.53684 -18.40420 -18.32234 -16.87066 -16.84812 -16.73565 -16.50213 -15.82554 -15.59584 -14.84783 -14.73195 -14.53277 -14.29705 -13.62013 -13.51742 -13.33673 -13.22192 -13.06233 -12.88100 -12.85829 -12.66539 -12.40344 -12.32418 -12.20705 -11.82083 -11.58874 -11.42264 -11.13099 -11.10164 -10.26680 -9.49788 -8.63308 -8.34922 -6.10664 0.17908 1.06708 1.17165 1.33606 1.42405 1.49618 1.79009 2.31458 2.73985 2.99550 3.12121 3.26657 3.36424 3.88402 4.01497 4.14974 4.22131 4.29895 4.30910 4.41527 4.47001 4.50971 4.59706 4.65219 4.66997 4.79389 4.79933 4.88979 5.03871 5.21758 5.22848 5.37723 5.42200 5.83839 5.91384 6.20341 7.07599 7.51927 8.74090 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.048534 B = 0.002850 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.777156 B = 9823.132273 C = 9913.409319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.073 3.927 4 C -0.085 4.085 5 C -0.086 4.086 6 S -0.206 6.206 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.014 3.986 10 N -0.909 5.909 11 Si 0.992 3.008 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.265 1.265 15 C 0.134 3.866 16 C 0.200 3.800 17 N -0.330 5.330 18 N -0.114 5.114 19 N -0.111 5.111 20 N -0.288 5.288 21 C 0.064 3.936 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.270 0.730 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -14.900 12.112 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.056 4.056 4 C -0.124 4.124 5 C -0.236 4.236 6 S 0.023 5.977 7 C -0.684 4.684 8 H 0.093 0.907 9 C -0.191 4.191 10 N -0.546 5.546 11 Si 0.814 3.186 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.190 1.190 15 C 0.003 3.997 16 C -0.079 4.079 17 N -0.181 5.181 18 N -0.108 5.108 19 N -0.098 5.098 20 N -0.091 5.091 21 C -0.075 4.075 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.411 -16.583 10.784 20.508 hybrid contribution 0.993 2.322 1.202 2.797 sum 6.404 -14.261 11.986 19.699 Atomic orbital electron populations 1.22435 0.87070 1.01603 1.01558 1.61896 1.08624 1.14798 1.41503 1.22078 1.01596 0.85815 0.96085 1.21177 1.00698 0.91907 0.98585 1.23152 1.02932 0.98691 0.98790 1.84728 1.75184 1.14020 1.23794 1.23020 1.40704 0.98592 1.06044 0.90657 1.26067 0.95574 1.03362 0.94096 1.70158 1.41338 1.35901 1.07171 0.85089 0.78944 0.76491 0.78052 1.18726 1.20307 1.18966 1.20757 1.03755 0.80756 0.94404 1.26244 0.89005 0.97181 0.95477 1.74926 1.19897 1.00786 1.22481 1.78574 1.11453 1.09312 1.11442 1.78778 1.03172 1.10055 1.17749 1.48724 1.19642 1.04939 1.35789 1.22972 0.76869 1.07601 1.00064 0.94093 0.91176 0.92788 0.93322 0.87774 0.91360 0.92458 0.91964 0.91085 0.92076 0.89406 0.84098 0.85641 0.86641 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.17 127.69 1.17 1.62 16 2 N -0.54 -9.40 4.75 -927.06 -4.41 -13.81 16 3 C 0.07 1.30 4.96 86.30 0.43 1.73 16 4 C -0.08 -2.31 5.15 30.59 0.16 -2.15 16 5 C -0.09 -3.08 5.67 71.98 0.41 -2.67 16 6 S -0.21 -10.53 21.44 -56.49 -1.21 -11.74 16 7 C -0.54 -29.94 9.50 67.95 0.65 -29.29 16 8 H 0.08 3.99 7.80 -2.91 -0.02 3.97 16 9 C 0.01 0.77 5.49 84.86 0.47 1.23 16 10 N -0.91 -54.22 13.22 21.65 0.29 -53.93 16 11 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 15 C 0.13 1.68 5.10 85.56 0.44 2.12 16 16 C 0.20 3.77 6.74 138.13 0.93 4.70 16 17 N -0.33 -8.67 11.68 -50.45 -0.59 -9.26 16 18 N -0.11 -3.29 13.43 37.01 0.50 -2.80 16 19 N -0.11 -2.68 13.29 37.02 0.49 -2.19 16 20 N -0.29 -4.90 3.75 -359.63 -1.35 -6.25 16 21 C 0.06 0.36 11.09 127.77 1.42 1.78 16 22 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.07 1.60 6.30 -2.38 -0.02 1.59 16 24 H 0.05 1.29 6.76 -2.39 -0.02 1.27 16 25 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.10 1.38 7.93 -2.39 -0.02 1.36 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.69 6.47 -2.38 -0.02 1.68 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.40 8.14 -2.40 -0.02 2.38 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.14 0.71 7.61 -2.39 -0.02 0.69 16 34 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.13 0.41 7.76 -2.39 -0.02 0.39 16 Total: -1.00 -75.36 319.35 2.88 -72.48 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.07 Total: 3.64 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 6.06 Total: -20.92 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -5.07 Total: -88.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -10.53 SS G_CDS: -1.21 Total: -11.74 kcal Total: -75.36 2.88 -72.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.132 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds