Wall clock time and date at job start Mon Mar 30 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00659 * 2 1 4 4 O 1.20822 * 119.99738 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00201 * 180.02562 * 3 2 1 6 6 C 1.52993 * 110.27456 * 57.90925 * 5 3 2 7 7 C 1.54597 * 110.30714 * 295.70974 * 5 3 2 8 8 C 1.54931 * 102.92165 * 219.12935 * 7 5 3 9 9 N 1.48529 * 103.22784 * 37.41699 * 8 7 5 10 10 C 1.46906 * 110.99750 * 200.27728 * 9 8 7 11 11 C 1.52998 * 109.47215 * 287.39526 * 10 9 8 12 12 O 1.42897 * 109.46795 * 65.00306 * 11 10 9 13 13 C 1.42905 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47896 * 105.81961 * 320.78984 * 9 8 7 23 23 H 1.09003 * 109.46930 * 60.00189 * 1 2 3 24 24 H 1.08994 * 109.47837 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46712 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.47084 * 182.08899 * 6 5 3 27 27 H 1.09005 * 109.47300 * 302.08767 * 6 5 3 28 28 H 1.08998 * 109.47183 * 62.09062 * 6 5 3 29 29 H 1.08999 * 110.72403 * 337.49342 * 7 5 3 30 30 H 1.09002 * 110.72082 * 100.59247 * 7 5 3 31 31 H 1.09001 * 110.66805 * 278.98138 * 8 7 5 32 32 H 1.08997 * 110.66767 * 155.85503 * 8 7 5 33 33 H 1.09000 * 109.46758 * 167.39750 * 10 9 8 34 34 H 1.08993 * 109.47047 * 47.40327 * 10 9 8 35 35 H 1.08995 * 109.47274 * 305.00344 * 11 10 9 36 36 H 1.09002 * 109.46559 * 184.99809 * 11 10 9 37 37 H 1.09007 * 109.46810 * 59.99780 * 13 12 11 38 38 H 1.09003 * 109.46936 * 300.00543 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.91417 * 144.68306 * 22 9 8 41 41 H 1.09004 * 109.92274 * 265.97413 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1352 0.5412 -1.2168 7 6 4.1356 0.6743 1.3054 8 6 5.3062 1.6308 1.6450 9 7 4.7815 2.9633 1.2513 10 6 5.8768 3.9202 1.0441 11 6 6.4756 4.3106 2.3968 12 8 7.0830 3.1650 2.9973 13 6 7.6763 3.4224 4.2716 14 6 8.2839 2.1523 4.8087 15 1 8.2234 1.2397 4.2343 16 6 8.9170 2.1552 6.0336 17 7 8.9911 3.2665 6.7328 18 14 9.6694 0.5805 6.6996 19 1 10.2861 0.8481 8.0238 20 1 8.6111 -0.4508 6.8453 21 1 10.7099 0.0926 5.7591 22 6 4.0247 2.7449 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 5.2242 0.5744 -1.1846 27 1 3.8028 -0.4968 -1.2034 28 1 3.7839 1.0235 -2.1290 29 1 3.3848 0.6878 2.0954 30 1 4.4986 -0.3397 1.1376 31 1 6.1913 1.3780 1.0612 32 1 5.5274 1.6043 2.7120 33 1 5.4922 4.8104 0.5465 34 1 6.6473 3.4617 0.4243 35 1 5.6870 4.6871 3.0482 36 1 7.2276 5.0860 2.2509 37 1 6.9128 3.7809 4.9621 38 1 8.4533 4.1794 4.1643 39 1 9.4362 3.2684 7.5947 40 1 3.1572 3.4042 -0.0298 41 1 4.6671 2.9337 -0.8607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339018844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:24 Heat of formation + Delta-G solvation = -131.909590 kcal Electronic energy + Delta-G solvation = -21501.011681 eV Core-core repulsion = 18188.131920 eV Total energy + Delta-G solvation = -3312.879760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99160 -38.84326 -36.76867 -36.37084 -33.76066 -32.59046 -29.98339 -28.71490 -27.94114 -26.83855 -25.76349 -23.12119 -22.47529 -21.87656 -20.55816 -19.70253 -17.48454 -16.98084 -16.47456 -16.37473 -15.72111 -15.49305 -15.03776 -14.46023 -14.21589 -14.02598 -13.56506 -13.53899 -13.13615 -12.90639 -12.77405 -12.34506 -12.27349 -12.15139 -11.73664 -11.64783 -11.21173 -11.15686 -11.03695 -10.96537 -10.77395 -10.73548 -10.61543 -10.48000 -10.26226 -9.94443 -9.09043 -8.78140 -8.17049 -8.10119 -6.09453 -4.11305 2.09805 2.53471 3.32258 3.35361 3.38607 4.16648 4.27297 4.35760 4.49890 4.71035 4.88361 4.91311 4.96328 4.97944 5.21668 5.26987 5.29336 5.38150 5.42697 5.52013 5.65948 5.66899 5.74378 5.85418 5.90018 6.04118 6.08267 6.16654 6.22005 6.27194 6.40504 6.65677 7.13288 7.16180 7.27714 7.47282 7.62486 7.79768 8.17475 8.60515 9.01745 9.53479 11.02049 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.003922 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.425927 B = 7137.080712 C = 7716.757415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.477 3.523 4 O -0.503 6.503 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.110 4.110 8 C 0.047 3.953 9 N -0.510 5.510 10 C 0.052 3.948 11 C 0.067 3.933 12 O -0.394 6.394 13 C 0.196 3.804 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.043 3.957 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -5.223 -15.850 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.320 3.680 4 O -0.390 6.390 5 C -0.066 4.066 6 C -0.194 4.194 7 C -0.149 4.149 8 C -0.080 4.080 9 N -0.235 5.235 10 C -0.076 4.076 11 C -0.011 4.011 12 O -0.314 6.314 13 C 0.122 3.878 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.085 4.085 23 H 0.079 0.921 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.340 -4.796 -15.353 20.897 hybrid contribution 0.707 -0.616 -0.038 0.939 sum -12.633 -5.412 -15.391 20.634 Atomic orbital electron populations 1.23263 0.76578 1.03596 1.02524 1.86512 1.23175 1.33427 1.84088 1.23556 0.91688 0.81190 0.71574 1.90635 1.66858 1.36322 1.45144 1.21393 0.86945 0.98771 0.99526 1.21889 1.01898 1.00533 0.95110 1.22676 0.98765 0.99505 0.93914 1.23345 0.94166 0.86164 1.04314 1.64856 1.22604 1.09180 1.26824 1.22315 0.92059 0.96203 0.97005 1.22225 0.95676 0.89933 0.93299 1.87833 1.74584 1.31951 1.36999 1.20158 0.91697 0.97168 0.78796 1.21005 1.35483 0.95564 1.03170 0.91675 1.24947 0.96179 0.96896 0.96458 1.69957 1.43671 1.26552 1.13569 0.86419 0.79398 0.82861 0.77924 1.21203 1.20002 1.20081 1.23043 0.99641 0.93170 0.92636 0.92051 0.88144 0.91834 0.90760 0.90997 0.92126 0.90511 0.89724 0.93212 0.87052 0.90327 0.93979 0.93556 0.94188 0.97712 0.97966 0.92627 0.88374 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.03 10.42 -39.26 -0.41 -4.44 16 3 C 0.48 6.24 6.47 36.01 0.23 6.47 16 4 O -0.50 -7.79 14.99 -18.75 -0.28 -8.07 16 5 C -0.06 -0.78 0.90 -154.31 -0.14 -0.92 16 6 C -0.14 -1.28 8.15 37.15 0.30 -0.98 16 7 C -0.11 -1.44 6.15 -24.87 -0.15 -1.59 16 8 C 0.05 0.75 5.32 -1.90 -0.01 0.74 16 9 N -0.51 -8.05 5.24 -230.46 -1.21 -9.26 16 10 C 0.05 0.81 5.27 -3.82 -0.02 0.79 16 11 C 0.07 1.25 6.25 37.16 0.23 1.48 16 12 O -0.39 -9.15 7.70 -35.23 -0.27 -9.42 16 13 C 0.20 5.33 5.69 36.00 0.20 5.53 16 14 C -0.51 -14.88 9.43 -34.44 -0.32 -15.21 16 15 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 18 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.04 0.57 5.93 -2.76 -0.02 0.56 16 23 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 30 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 31 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 32 H 0.11 2.15 6.80 -51.93 -0.35 1.80 16 33 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.01 0.14 8.14 -51.92 -0.42 -0.28 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.10 1.42 6.42 -51.93 -0.33 1.09 16 41 H 0.05 0.61 7.31 -51.93 -0.38 0.23 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -32.26 335.51 -7.00 -39.27 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.88 Total: -3.36 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 1.28 Total: -0.26 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.47 Total: -35.42 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.96 Total: -21.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.26 -7.00 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.644 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds