Wall clock time and date at job start Mon Mar 30 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00659 * 2 1 4 4 O 1.20822 * 119.99738 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00201 * 180.02562 * 3 2 1 6 6 C 1.52993 * 110.27456 * 57.90925 * 5 3 2 7 7 C 1.54597 * 110.30714 * 295.70974 * 5 3 2 8 8 C 1.54931 * 102.92165 * 219.12935 * 7 5 3 9 9 N 1.48529 * 103.22784 * 37.41699 * 8 7 5 10 10 C 1.46906 * 110.99750 * 200.27728 * 9 8 7 11 11 C 1.52998 * 109.47215 * 287.39526 * 10 9 8 12 12 O 1.42897 * 109.46795 * 65.00306 * 11 10 9 13 13 C 1.42905 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47896 * 105.81961 * 320.78984 * 9 8 7 23 23 H 1.09003 * 109.46930 * 60.00189 * 1 2 3 24 24 H 1.08994 * 109.47837 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46712 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.47084 * 182.08899 * 6 5 3 27 27 H 1.09005 * 109.47300 * 302.08767 * 6 5 3 28 28 H 1.08998 * 109.47183 * 62.09062 * 6 5 3 29 29 H 1.08999 * 110.72403 * 337.49342 * 7 5 3 30 30 H 1.09002 * 110.72082 * 100.59247 * 7 5 3 31 31 H 1.09001 * 110.66805 * 278.98138 * 8 7 5 32 32 H 1.08997 * 110.66767 * 155.85503 * 8 7 5 33 33 H 1.09000 * 109.46758 * 167.39750 * 10 9 8 34 34 H 1.08993 * 109.47047 * 47.40327 * 10 9 8 35 35 H 1.08995 * 109.47274 * 305.00344 * 11 10 9 36 36 H 1.09002 * 109.46559 * 184.99809 * 11 10 9 37 37 H 1.09007 * 109.46810 * 59.99780 * 13 12 11 38 38 H 1.09003 * 109.46936 * 300.00543 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.91417 * 144.68306 * 22 9 8 41 41 H 1.09004 * 109.92274 * 265.97413 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1352 0.5412 -1.2168 7 6 4.1356 0.6743 1.3054 8 6 5.3062 1.6308 1.6450 9 7 4.7815 2.9633 1.2513 10 6 5.8768 3.9202 1.0441 11 6 6.4756 4.3106 2.3968 12 8 7.0830 3.1650 2.9973 13 6 7.6763 3.4224 4.2716 14 6 8.2839 2.1523 4.8087 15 1 8.2234 1.2397 4.2343 16 6 8.9170 2.1552 6.0336 17 7 8.9911 3.2665 6.7328 18 14 9.6694 0.5805 6.6996 19 1 10.2861 0.8481 8.0238 20 1 8.6111 -0.4508 6.8453 21 1 10.7099 0.0926 5.7591 22 6 4.0247 2.7449 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 5.2242 0.5744 -1.1846 27 1 3.8028 -0.4968 -1.2034 28 1 3.7839 1.0235 -2.1290 29 1 3.3848 0.6878 2.0954 30 1 4.4986 -0.3397 1.1376 31 1 6.1913 1.3780 1.0612 32 1 5.5274 1.6043 2.7120 33 1 5.4922 4.8104 0.5465 34 1 6.6473 3.4617 0.4243 35 1 5.6870 4.6871 3.0482 36 1 7.2276 5.0860 2.2509 37 1 6.9128 3.7809 4.9621 38 1 8.4533 4.1794 4.1643 39 1 9.4362 3.2684 7.5947 40 1 3.1572 3.4042 -0.0298 41 1 4.6671 2.9337 -0.8607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:24 Heat of formation + Delta-G solvation = -153.725729 kcal Electronic energy + Delta-G solvation = -21501.957700 eV Core-core repulsion = 18188.131920 eV Total energy + Delta-G solvation = -3313.825779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99046 -39.98384 -38.39006 -37.47989 -35.20686 -34.51479 -31.20206 -30.14249 -28.86703 -28.55407 -26.78260 -24.56281 -24.14168 -23.27651 -21.83860 -20.66629 -18.59194 -18.47851 -17.98105 -17.43154 -17.36607 -16.94912 -16.51237 -16.08310 -15.57694 -15.17685 -15.01495 -14.58288 -14.46062 -14.08459 -13.84857 -13.53910 -13.41860 -13.21925 -13.09710 -12.95974 -12.84472 -12.75681 -12.48889 -12.29867 -12.15108 -11.98118 -11.82010 -11.78076 -11.68455 -11.32520 -11.20371 -10.82532 -10.16594 -9.34581 -8.29625 -6.41846 1.09880 1.41447 1.46263 1.54446 1.67152 2.36256 3.00174 3.04543 3.21464 3.30871 3.51985 3.78923 3.98005 4.11081 4.29655 4.30634 4.31755 4.33586 4.38888 4.52607 4.60483 4.68789 4.71971 4.73745 4.82153 4.85490 4.90383 4.95584 4.99806 5.08819 5.19946 5.21779 5.27241 5.35841 5.57265 5.94541 5.98802 6.07239 6.56335 6.66211 6.84629 7.30050 8.82717 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.003922 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.425927 B = 7137.080712 C = 7716.757415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.478 3.522 4 O -0.533 6.533 5 C -0.061 4.061 6 C -0.132 4.132 7 C -0.103 4.103 8 C 0.050 3.950 9 N -0.532 5.532 10 C 0.061 3.939 11 C 0.058 3.942 12 O -0.396 6.396 13 C 0.211 3.789 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.983 3.017 19 H -0.278 1.278 20 H -0.265 1.265 21 H -0.264 1.264 22 C 0.046 3.954 23 H 0.065 0.935 24 H 0.133 0.867 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.050 0.950 37 H -0.021 1.021 38 H -0.017 1.017 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 -7.082 -17.313 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.322 3.678 4 O -0.423 6.423 5 C -0.063 4.063 6 C -0.189 4.189 7 C -0.141 4.141 8 C -0.077 4.077 9 N -0.257 5.257 10 C -0.067 4.067 11 C -0.019 4.019 12 O -0.316 6.316 13 C 0.136 3.864 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.805 3.195 19 H -0.203 1.203 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.081 4.081 23 H 0.084 0.916 24 H 0.151 0.849 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.068 0.932 37 H -0.004 1.004 38 H 0.000 1.000 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.400 -6.662 -16.841 22.529 hybrid contribution 0.619 0.028 0.397 0.736 sum -12.781 -6.634 -16.444 21.858 Atomic orbital electron populations 1.23567 0.74883 1.05777 1.02421 1.86499 1.24847 1.32351 1.83506 1.23726 0.92040 0.81239 0.70760 1.90624 1.67560 1.37357 1.46710 1.21396 0.86583 0.98172 1.00142 1.21896 1.02135 1.00895 0.93977 1.22600 0.97291 1.00017 0.94189 1.23145 0.95482 0.87342 1.01730 1.64749 1.22893 1.09180 1.28850 1.22278 0.92246 0.97496 0.94679 1.22527 0.95552 0.89099 0.94770 1.87826 1.74574 1.34008 1.35193 1.19758 0.90371 0.96185 0.80096 1.21352 1.36504 0.96073 1.04113 0.91598 1.25983 0.96167 1.00829 0.96407 1.70081 1.44145 1.29022 1.14051 0.85241 0.78740 0.78059 0.77428 1.20332 1.18923 1.18827 1.23009 0.99120 0.93940 0.92077 0.91617 0.84854 0.92550 0.90122 0.89815 0.90951 0.91860 0.87527 0.93049 0.91205 0.87435 0.93185 0.94609 0.93174 1.00370 0.99963 0.92169 0.89614 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.42 10.42 -51.41 -0.54 -7.96 16 3 C 0.48 11.91 6.47 71.24 0.46 12.37 16 4 O -0.53 -16.24 14.99 21.98 0.33 -15.91 16 5 C -0.06 -1.37 0.90 -52.05 -0.05 -1.42 16 6 C -0.13 -2.07 8.15 71.98 0.59 -1.49 16 7 C -0.10 -2.59 6.15 31.80 0.20 -2.40 16 8 C 0.05 1.61 5.32 86.65 0.46 2.07 16 9 N -0.53 -16.54 5.24 -883.04 -4.63 -21.17 16 10 C 0.06 1.81 5.27 86.30 0.45 2.27 16 11 C 0.06 2.21 6.25 71.98 0.45 2.66 16 12 O -0.40 -18.98 7.70 -148.98 -1.15 -20.13 16 13 C 0.21 11.95 5.69 71.23 0.41 12.35 16 14 C -0.54 -32.09 9.43 25.60 0.24 -31.85 16 15 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 18 Si 0.98 44.18 29.54 68.60 2.03 46.21 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 C 0.05 1.15 5.93 86.45 0.51 1.67 16 23 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 24 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.14 8.08 -2.38 -0.02 1.13 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.75 7.86 -2.39 -0.02 1.73 16 30 H 0.11 2.19 7.86 -2.39 -0.02 2.17 16 31 H 0.05 1.59 7.81 -2.39 -0.02 1.57 16 32 H 0.07 2.82 6.80 -2.39 -0.02 2.80 16 33 H 0.11 2.58 8.08 -2.39 -0.02 2.56 16 34 H 0.05 1.42 7.83 -2.39 -0.02 1.40 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 38 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.09 2.41 6.42 -2.39 -0.02 2.39 16 41 H 0.07 1.54 7.31 -2.38 -0.02 1.52 16 Total: -1.00 -70.88 335.51 2.70 -68.18 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.99 Total: 8.70 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.38 Total: -1.46 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -4.35 Total: -77.63 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.35 Total: -44.00 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.88 2.70 -68.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.544 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds