Wall clock time and date at job start Mon Mar 30 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00010 * 2 1 4 4 O 1.20830 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00399 * 179.97438 * 3 2 1 6 6 C 1.52998 * 110.35474 * 302.14845 * 5 3 2 7 7 C 1.54604 * 110.30636 * 64.28703 * 5 3 2 8 8 C 1.54940 * 102.91923 * 140.87331 * 7 5 3 9 9 N 1.48530 * 103.22772 * 322.58912 * 8 7 5 10 10 C 1.46906 * 110.99918 * 159.72252 * 9 8 7 11 11 C 1.53000 * 109.47072 * 52.60105 * 10 9 8 12 12 O 1.42894 * 109.47226 * 65.00091 * 11 10 9 13 13 C 1.42903 * 113.99852 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47074 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00230 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00046 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47025 * 89.99864 * 18 16 14 20 20 H 1.48500 * 109.47472 * 209.99880 * 18 16 14 21 21 H 1.48505 * 109.47283 * 330.00255 * 18 16 14 22 22 C 1.47899 * 105.82565 * 39.20791 * 9 8 7 23 23 H 1.09002 * 109.46771 * 299.99532 * 1 2 3 24 24 H 1.09000 * 109.47158 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46711 * 297.85431 * 6 5 3 27 27 H 1.09007 * 109.47098 * 57.85399 * 6 5 3 28 28 H 1.08994 * 109.47476 * 177.85615 * 6 5 3 29 29 H 1.09002 * 110.72257 * 259.23292 * 7 5 3 30 30 H 1.09000 * 110.72243 * 22.51832 * 7 5 3 31 31 H 1.09002 * 110.66363 * 204.14979 * 8 7 5 32 32 H 1.09004 * 110.66357 * 81.02699 * 8 7 5 33 33 H 1.08993 * 109.47164 * 172.59958 * 10 9 8 34 34 H 1.08996 * 109.46920 * 292.59993 * 10 9 8 35 35 H 1.09003 * 109.47287 * 185.00504 * 11 10 9 36 36 H 1.09000 * 109.47065 * 305.00093 * 11 10 9 37 37 H 1.09003 * 109.46907 * 299.99792 * 13 12 11 38 38 H 1.08994 * 109.47647 * 60.00258 * 13 12 11 39 39 H 0.96995 * 120.00070 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.91760 * 94.02263 * 22 9 8 41 41 H 1.09001 * 109.91722 * 215.12221 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1373 0.5409 1.2155 7 6 4.1356 0.6746 -1.3054 8 6 5.3061 1.6312 -1.6450 9 7 4.7813 2.9637 -1.2512 10 6 5.8765 3.9207 -1.0440 11 6 6.7823 3.9339 -2.2770 12 8 6.0519 4.4326 -3.3993 13 6 6.8103 4.4857 -4.6093 14 6 5.9464 5.0242 -5.7204 15 1 4.9206 5.2981 -5.5226 16 6 6.4655 5.1673 -6.9897 17 7 5.7117 5.6378 -7.9593 18 14 8.2399 4.6944 -7.3319 19 1 8.3026 3.2668 -7.7360 20 1 8.7762 5.5427 -8.4264 21 1 9.0518 4.8976 -6.1051 22 6 4.0245 2.7452 0.0006 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.7874 1.0226 2.1285 27 1 3.8049 -0.4972 1.2020 28 1 5.2262 0.5742 1.1815 29 1 4.5016 -0.3382 -1.1369 30 1 3.3848 0.6882 -2.0955 31 1 5.5273 1.6048 -2.7121 32 1 6.1913 1.3784 -1.0613 33 1 5.4635 4.9169 -0.8859 34 1 6.4567 3.6250 -0.1700 35 1 7.6427 4.5762 -2.0889 36 1 7.1245 2.9206 -2.4873 37 1 7.6715 5.1393 -4.4698 38 1 7.1527 3.4838 -4.8679 39 1 6.0771 5.7388 -8.8522 40 1 4.6669 2.9340 0.8606 41 1 3.1588 3.4070 0.0315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339018845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:27 Heat of formation + Delta-G solvation = -123.056513 kcal Electronic energy + Delta-G solvation = -21395.754412 eV Core-core repulsion = 18083.258550 eV Total energy + Delta-G solvation = -3312.495862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04697 -39.00778 -36.89462 -36.44758 -33.92612 -32.51595 -30.07054 -29.09936 -27.99665 -27.40469 -25.76913 -23.22030 -22.69479 -21.79847 -20.40651 -19.74908 -17.53449 -17.06007 -16.78369 -16.46682 -15.86932 -15.71791 -15.10852 -14.53966 -14.25667 -14.21252 -13.67233 -13.62028 -13.28058 -13.04341 -12.75790 -12.53364 -12.38554 -12.17608 -12.02339 -11.90479 -11.58890 -11.22789 -11.17498 -10.97925 -10.93056 -10.85198 -10.69764 -10.40500 -10.30679 -9.82721 -9.12316 -8.79393 -8.41453 -8.20386 -6.06679 -4.05139 2.07837 2.49861 3.26623 3.33494 3.34888 3.99990 4.15282 4.36821 4.38894 4.58702 4.70085 4.80006 4.90332 4.98584 5.05634 5.16770 5.24195 5.27592 5.29075 5.36202 5.48142 5.51402 5.59419 5.65587 5.74434 5.80127 5.89983 5.97682 6.01640 6.06687 6.22675 6.24457 6.63228 6.97730 7.03577 7.14636 7.60784 7.64824 8.09226 8.73143 9.07331 9.52801 11.06573 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.003794 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.907309 B = 7378.946934 C = 7837.594634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.497 6.497 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.107 4.107 8 C 0.034 3.966 9 N -0.498 5.498 10 C 0.052 3.948 11 C 0.058 3.942 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.515 4.515 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.043 3.957 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.000 1.000 38 H -0.004 1.004 39 H 0.266 0.734 40 H 0.053 0.947 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 -13.968 20.204 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.317 3.683 4 O -0.383 6.383 5 C -0.066 4.066 6 C -0.194 4.194 7 C -0.145 4.145 8 C -0.093 4.093 9 N -0.222 5.222 10 C -0.076 4.076 11 C -0.020 4.020 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.553 4.553 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.085 4.085 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.515 -13.315 19.603 23.956 hybrid contribution 1.518 -0.519 0.265 1.626 sum -1.997 -13.834 19.868 24.292 Atomic orbital electron populations 1.23278 0.76413 1.03601 1.02683 1.86492 1.23312 1.33372 1.84181 1.23462 0.91585 0.81302 0.71929 1.90669 1.66731 1.36269 1.44630 1.21370 0.87330 0.98661 0.99200 1.21889 1.01574 1.00609 0.95313 1.22590 0.98449 0.98884 0.94541 1.23305 0.95261 0.88219 1.02564 1.64855 1.22480 1.07569 1.27283 1.22341 0.91767 0.97907 0.95536 1.22392 0.93728 0.97634 0.88227 1.88041 1.38285 1.84846 1.17111 1.20587 0.92484 0.94534 0.83157 1.20911 1.00402 1.42590 0.91414 0.89867 1.24772 0.97645 0.94882 0.95721 1.69883 1.36230 1.45744 1.01648 0.86859 0.85557 0.78931 0.78418 1.19991 1.20836 1.19176 1.23095 1.00067 0.93231 0.92057 0.92004 0.91686 0.88138 0.91950 0.90940 0.90988 0.89659 0.89966 0.88666 0.93684 0.89556 0.93963 0.94000 0.94317 0.98205 0.98641 0.92437 0.92892 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.91 10.43 -39.26 -0.41 -4.32 16 3 C 0.48 6.10 6.48 36.00 0.23 6.34 16 4 O -0.50 -7.88 14.99 -18.75 -0.28 -8.16 16 5 C -0.06 -0.71 0.90 -154.30 -0.14 -0.85 16 6 C -0.14 -1.08 8.14 37.16 0.30 -0.78 16 7 C -0.11 -1.21 6.15 -24.86 -0.15 -1.36 16 8 C 0.03 0.45 5.09 -1.90 -0.01 0.44 16 9 N -0.50 -7.66 5.34 -230.45 -1.23 -8.89 16 10 C 0.05 0.78 5.41 -3.82 -0.02 0.75 16 11 C 0.06 1.02 5.76 37.16 0.21 1.24 16 12 O -0.36 -8.70 10.27 -35.23 -0.36 -9.06 16 13 C 0.17 4.34 4.76 36.01 0.17 4.51 16 14 C -0.52 -15.69 9.99 -34.44 -0.34 -16.04 16 15 H 0.08 2.80 8.06 -52.48 -0.42 2.37 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 C 0.04 0.56 5.96 -2.75 -0.02 0.54 16 23 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 30 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 31 H 0.10 1.45 7.56 -51.93 -0.39 1.06 16 32 H 0.04 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.50 7.81 -51.93 -0.41 0.09 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.63 6.52 -51.93 -0.34 0.29 16 37 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 38 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 39 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.05 0.57 7.11 -51.93 -0.37 0.20 16 41 H 0.10 1.54 6.44 -51.93 -0.33 1.21 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -34.93 333.22 -6.76 -41.69 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.81 Total: -4.05 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 1.21 Total: -1.82 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.46 Total: -36.28 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.05 Total: -21.54 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.93 -6.76 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.366 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds