Wall clock time and date at job start Mon Mar 30 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00010 * 2 1 4 4 O 1.20830 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00399 * 179.97438 * 3 2 1 6 6 C 1.52998 * 110.35474 * 302.14845 * 5 3 2 7 7 C 1.54604 * 110.30636 * 64.28703 * 5 3 2 8 8 C 1.54940 * 102.91923 * 140.87331 * 7 5 3 9 9 N 1.48530 * 103.22772 * 322.58912 * 8 7 5 10 10 C 1.46906 * 110.99918 * 159.72252 * 9 8 7 11 11 C 1.53000 * 109.47072 * 52.60105 * 10 9 8 12 12 O 1.42894 * 109.47226 * 65.00091 * 11 10 9 13 13 C 1.42903 * 113.99852 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47074 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00230 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00046 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47025 * 89.99864 * 18 16 14 20 20 H 1.48500 * 109.47472 * 209.99880 * 18 16 14 21 21 H 1.48505 * 109.47283 * 330.00255 * 18 16 14 22 22 C 1.47899 * 105.82565 * 39.20791 * 9 8 7 23 23 H 1.09002 * 109.46771 * 299.99532 * 1 2 3 24 24 H 1.09000 * 109.47158 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46711 * 297.85431 * 6 5 3 27 27 H 1.09007 * 109.47098 * 57.85399 * 6 5 3 28 28 H 1.08994 * 109.47476 * 177.85615 * 6 5 3 29 29 H 1.09002 * 110.72257 * 259.23292 * 7 5 3 30 30 H 1.09000 * 110.72243 * 22.51832 * 7 5 3 31 31 H 1.09002 * 110.66363 * 204.14979 * 8 7 5 32 32 H 1.09004 * 110.66357 * 81.02699 * 8 7 5 33 33 H 1.08993 * 109.47164 * 172.59958 * 10 9 8 34 34 H 1.08996 * 109.46920 * 292.59993 * 10 9 8 35 35 H 1.09003 * 109.47287 * 185.00504 * 11 10 9 36 36 H 1.09000 * 109.47065 * 305.00093 * 11 10 9 37 37 H 1.09003 * 109.46907 * 299.99792 * 13 12 11 38 38 H 1.08994 * 109.47647 * 60.00258 * 13 12 11 39 39 H 0.96995 * 120.00070 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.91760 * 94.02263 * 22 9 8 41 41 H 1.09001 * 109.91722 * 215.12221 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1373 0.5409 1.2155 7 6 4.1356 0.6746 -1.3054 8 6 5.3061 1.6312 -1.6450 9 7 4.7813 2.9637 -1.2512 10 6 5.8765 3.9207 -1.0440 11 6 6.7823 3.9339 -2.2770 12 8 6.0519 4.4326 -3.3993 13 6 6.8103 4.4857 -4.6093 14 6 5.9464 5.0242 -5.7204 15 1 4.9206 5.2981 -5.5226 16 6 6.4655 5.1673 -6.9897 17 7 5.7117 5.6378 -7.9593 18 14 8.2399 4.6944 -7.3319 19 1 8.3026 3.2668 -7.7360 20 1 8.7762 5.5427 -8.4264 21 1 9.0518 4.8976 -6.1051 22 6 4.0245 2.7452 0.0006 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.7874 1.0226 2.1285 27 1 3.8049 -0.4972 1.2020 28 1 5.2262 0.5742 1.1815 29 1 4.5016 -0.3382 -1.1369 30 1 3.3848 0.6882 -2.0955 31 1 5.5273 1.6048 -2.7121 32 1 6.1913 1.3784 -1.0613 33 1 5.4635 4.9169 -0.8859 34 1 6.4567 3.6250 -0.1700 35 1 7.6427 4.5762 -2.0889 36 1 7.1245 2.9206 -2.4873 37 1 7.6715 5.1393 -4.4698 38 1 7.1527 3.4838 -4.8679 39 1 6.0771 5.7388 -8.8522 40 1 4.6669 2.9340 0.8606 41 1 3.1588 3.4070 0.0315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:26 Heat of formation + Delta-G solvation = -149.267798 kcal Electronic energy + Delta-G solvation = -21396.891019 eV Core-core repulsion = 18083.258550 eV Total energy + Delta-G solvation = -3313.632469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01122 -40.05183 -38.46601 -37.51336 -35.20666 -34.57889 -31.19865 -30.48744 -29.22725 -28.64935 -26.66310 -24.31587 -23.93753 -23.71673 -21.55665 -20.67037 -19.03152 -18.48254 -18.00311 -17.44516 -17.35888 -17.08861 -16.41491 -16.15648 -15.68920 -15.28028 -14.80935 -14.68995 -14.59639 -14.33905 -13.82487 -13.72781 -13.60648 -13.18574 -13.15917 -13.02964 -12.86019 -12.66789 -12.53167 -12.25464 -12.05216 -11.88092 -11.83444 -11.80617 -11.72899 -11.33998 -11.29400 -10.91418 -10.29188 -9.24248 -8.36519 -6.44764 1.09376 1.32865 1.37162 1.48063 1.65796 2.30185 2.95300 2.96025 3.15597 3.25360 3.51105 3.78460 3.96623 4.10969 4.21327 4.25370 4.28300 4.28887 4.32709 4.48151 4.53418 4.60717 4.63450 4.67632 4.72389 4.81927 4.86510 4.92895 4.96476 5.01896 5.04675 5.09869 5.22184 5.33850 5.45204 5.93471 5.96581 6.11688 6.60113 6.65311 6.81894 7.20226 8.81273 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.003794 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.907309 B = 7378.946934 C = 7837.594634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.060 4.060 6 C -0.130 4.130 7 C -0.101 4.101 8 C 0.036 3.964 9 N -0.540 5.540 10 C 0.058 3.942 11 C 0.049 3.951 12 O -0.398 6.398 13 C 0.180 3.820 14 C -0.546 4.546 15 H 0.023 0.977 16 C 0.010 3.990 17 N -0.945 5.945 18 Si 0.960 3.040 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.243 1.243 22 C 0.046 3.954 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.136 0.864 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.273 0.727 40 H 0.080 0.920 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 -16.332 21.977 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.062 4.062 6 C -0.187 4.187 7 C -0.139 4.139 8 C -0.092 4.092 9 N -0.265 5.265 10 C -0.070 4.070 11 C -0.028 4.028 12 O -0.317 6.317 13 C 0.105 3.895 14 C -0.584 4.584 15 H 0.042 0.958 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.781 3.219 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.167 1.167 22 C -0.081 4.081 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.596 -15.702 21.407 26.555 hybrid contribution 0.423 0.235 -0.266 0.552 sum -0.173 -15.467 21.141 26.196 Atomic orbital electron populations 1.23558 0.75045 1.05812 1.02248 1.86484 1.24695 1.32264 1.83565 1.23939 0.92470 0.81191 0.70754 1.90656 1.67765 1.37640 1.46676 1.21431 0.86153 0.97908 1.00695 1.21902 1.02528 1.00732 0.93503 1.22579 0.97238 1.00301 0.93820 1.23275 0.97002 0.87550 1.01326 1.64713 1.23550 1.09001 1.29212 1.22307 0.91761 0.97366 0.95575 1.22778 0.94529 0.98588 0.86902 1.87995 1.39927 1.85684 1.18105 1.20276 0.91560 0.94858 0.82840 1.21194 0.98817 1.44156 0.94215 0.95850 1.25916 1.03940 0.94057 0.94824 1.70054 1.39272 1.46671 1.02495 0.85542 0.77768 0.79312 0.79267 1.18224 1.19855 1.16660 1.23006 0.99153 0.93962 0.92023 0.91733 0.92935 0.84580 0.91408 0.89690 0.89088 0.86314 0.92600 0.91516 0.90496 0.91220 0.89685 0.92242 0.92610 0.97087 0.97196 0.91817 0.90183 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.41 10.43 -51.43 -0.54 -7.95 16 3 C 0.47 12.09 6.48 71.23 0.46 12.55 16 4 O -0.54 -17.82 14.99 21.95 0.33 -17.49 16 5 C -0.06 -1.25 0.90 -52.05 -0.05 -1.29 16 6 C -0.13 -1.59 8.14 71.98 0.59 -1.00 16 7 C -0.10 -2.14 6.15 31.80 0.20 -1.95 16 8 C 0.04 0.88 5.09 86.65 0.44 1.32 16 9 N -0.54 -16.33 5.34 -883.01 -4.72 -21.05 16 10 C 0.06 1.61 5.41 86.30 0.47 2.08 16 11 C 0.05 1.63 5.76 71.98 0.41 2.05 16 12 O -0.40 -19.24 10.27 -148.98 -1.53 -20.77 16 13 C 0.18 9.30 4.76 71.24 0.34 9.63 16 14 C -0.55 -34.58 9.99 25.60 0.26 -34.32 16 15 H 0.02 1.69 8.06 -2.91 -0.02 1.66 16 16 C 0.01 0.61 5.47 84.65 0.46 1.08 16 17 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 18 Si 0.96 43.98 27.47 68.60 1.88 45.86 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 22 C 0.05 1.15 5.96 86.45 0.52 1.67 16 23 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 24 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 25 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.87 8.08 -2.38 -0.02 0.85 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.12 1.68 7.85 -2.39 -0.02 1.66 16 30 H 0.06 1.46 7.86 -2.39 -0.02 1.44 16 31 H 0.07 2.01 7.56 -2.39 -0.02 1.99 16 32 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 1.65 7.81 -2.39 -0.02 1.64 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.67 6.52 -2.39 -0.02 1.66 16 37 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 38 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 39 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 40 H 0.08 1.52 7.11 -2.39 -0.02 1.50 16 41 H 0.07 2.21 6.44 -2.39 -0.02 2.20 16 Total: -1.00 -81.20 333.22 1.95 -79.25 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.94 Total: 9.61 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.29 Total: -6.58 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -4.42 Total: -81.93 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.74 Total: -46.21 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -81.20 1.95 -79.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.020 kcal (2) G-P(sol) polarization free energy of solvation -81.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds