Wall clock time and date at job start Mon Mar 30 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.47018 * 111.00401 * 46.45068 * 13 12 11 15 15 C 1.53096 * 109.35739 * 182.84515 * 14 13 12 16 16 O 1.43149 * 109.20727 * 302.62081 * 15 14 13 17 17 C 1.42284 * 113.81614 * 57.53416 * 16 15 14 18 18 C 1.53997 * 110.34657 * 65.50149 * 17 16 15 19 19 C 1.54603 * 103.87672 * 118.55122 * 18 17 16 20 20 O 1.44480 * 104.81849 * 23.90548 * 19 18 17 21 21 C 1.44548 * 105.36833 * 319.82822 * 20 19 18 22 22 C 1.47128 * 111.00219 * 170.00006 * 13 12 11 23 23 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 25 25 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 26 26 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 27 27 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 28 28 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 29 29 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 30 30 H 1.09002 * 109.48869 * 302.81011 * 14 13 12 31 31 H 1.09001 * 109.49111 * 62.88076 * 14 13 12 32 32 H 1.09008 * 109.51406 * 182.70137 * 15 14 13 33 33 H 1.08997 * 109.56224 * 62.56946 * 15 14 13 34 34 H 1.09003 * 110.54143 * 237.14869 * 18 17 16 35 35 H 1.08995 * 110.54491 * 359.94982 * 18 17 16 36 36 H 1.09001 * 110.37033 * 142.73840 * 19 18 17 37 37 H 1.08995 * 110.36612 * 265.06966 * 19 18 17 38 38 H 1.08995 * 110.39529 * 281.18681 * 21 20 19 39 39 H 1.09009 * 110.38991 * 158.79719 * 21 20 19 40 40 H 1.09002 * 109.49153 * 298.67474 * 22 13 12 41 41 H 1.08992 * 109.50008 * 58.73179 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 2.5087 -5.7772 2.4110 15 6 3.3397 -5.6372 3.6892 16 8 4.2185 -6.7612 3.8051 17 6 5.0901 -6.9262 2.6926 18 6 6.0734 -5.7444 2.6029 19 6 7.4621 -6.4045 2.7636 20 8 7.2696 -7.7756 2.3506 21 6 5.9861 -8.1620 2.8917 22 6 4.2976 -7.0517 1.3962 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 0.9453 -4.9822 0.8903 27 1 0.9448 -4.9826 -0.8898 28 1 2.1822 -6.9374 -0.0898 29 1 3.3212 -5.7956 -0.8429 30 1 1.8716 -4.9006 2.2936 31 1 1.8891 -6.6716 2.4762 32 1 2.6759 -5.6033 4.5532 33 1 3.9262 -4.7195 3.6445 34 1 5.9933 -5.2530 1.6332 35 1 5.8919 -5.0337 3.4091 36 1 8.1924 -5.9135 2.1204 37 1 7.7835 -6.3633 3.8043 38 1 6.0765 -8.3987 3.9518 39 1 5.5843 -9.0147 2.3442 40 1 3.7009 -7.9636 1.4215 41 1 4.9849 -7.0901 0.5512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:54 Heat of formation + Delta-G solvation = -122.499860 kcal Electronic energy + Delta-G solvation = -21935.591751 eV Core-core repulsion = 18623.120028 eV Total energy + Delta-G solvation = -3312.471724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71833 -38.28876 -36.97113 -35.35934 -32.72313 -32.17536 -30.18450 -29.80570 -27.80603 -26.76703 -24.73379 -23.34496 -22.83536 -22.31240 -20.73259 -19.36657 -17.19018 -16.61531 -16.33660 -16.30833 -15.72644 -15.53471 -15.08667 -14.84028 -14.55343 -14.32296 -14.06112 -14.03446 -13.39810 -13.05920 -12.96143 -12.28405 -12.14625 -11.90234 -11.76714 -11.55987 -11.19674 -11.13187 -11.06435 -10.84708 -10.76448 -10.54223 -10.33900 -10.03633 -9.89427 -9.58753 -9.12227 -8.82059 -8.21628 -8.15420 -6.11478 -4.12906 3.31847 3.34532 3.38506 3.48632 3.73457 3.93881 4.33737 4.46182 4.60350 4.74500 4.86933 5.00064 5.06903 5.07634 5.22286 5.25059 5.31842 5.39672 5.42520 5.52283 5.54353 5.59440 5.61233 5.66606 5.79651 5.87837 5.93492 6.02471 6.10866 6.13088 6.24252 6.49258 7.05281 7.05721 7.11291 7.18880 7.40549 7.79542 8.14971 8.58047 9.00859 9.52051 11.00070 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.004246 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.170825 B = 6593.627397 C = 7093.561893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.058 3.942 12 C 0.062 3.938 13 N -0.519 5.519 14 C 0.014 3.986 15 C 0.063 3.937 16 O -0.374 6.374 17 C 0.091 3.909 18 C -0.170 4.170 19 C 0.045 3.955 20 O -0.372 6.372 21 C 0.061 3.939 22 C 0.037 3.963 23 H 0.264 0.736 24 H 0.003 0.997 25 H 0.002 0.998 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -15.581 6.062 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.020 4.020 12 C -0.066 4.066 13 N -0.244 5.244 14 C -0.114 4.114 15 C -0.013 4.013 16 O -0.293 6.293 17 C 0.050 3.950 18 C -0.208 4.208 19 C -0.031 4.031 20 O -0.290 6.290 21 C -0.016 4.016 22 C -0.091 4.091 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.056 0.944 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.029 -15.245 6.067 18.728 hybrid contribution -0.816 0.528 -0.109 0.978 sum 8.213 -14.717 5.958 17.875 Atomic orbital electron populations 1.69949 1.06114 1.27240 1.50631 1.24940 0.94946 0.99394 0.95168 0.86408 0.79320 0.81955 0.78863 1.20011 1.21190 1.20018 1.21007 0.94034 0.89296 1.50712 0.91572 1.20185 0.88830 0.83874 0.95134 1.87968 1.34679 1.12269 1.95031 1.22386 0.93993 0.86375 0.99234 1.22182 0.95892 0.96191 0.92305 1.62170 1.20987 1.39246 1.02017 1.22884 0.95464 1.02203 0.90892 1.22761 0.92050 0.89239 0.97252 1.87836 1.51146 1.49406 1.40937 1.22390 0.90394 0.95528 0.86652 1.23411 0.93972 0.98336 1.05110 1.23471 0.97565 0.82059 1.00043 1.89168 1.35907 1.28265 1.75707 1.23199 0.82787 0.95633 1.00012 1.22640 0.96623 0.92039 0.97795 0.92632 0.97944 0.97980 0.94238 0.94055 0.94254 0.89730 0.88035 0.94601 0.88329 0.91479 0.88586 0.89661 0.88826 0.92221 0.90910 0.88381 0.94357 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.00 9.43 -34.44 -0.32 -15.32 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.27 5.69 36.01 0.20 5.47 16 10 O -0.38 -9.00 10.27 -35.23 -0.36 -9.36 16 11 C 0.06 1.05 5.43 37.16 0.20 1.25 16 12 C 0.06 0.92 5.66 -3.83 -0.02 0.90 16 13 N -0.52 -7.73 4.58 -234.62 -1.08 -8.81 16 14 C 0.01 0.19 4.95 -3.71 -0.02 0.17 16 15 C 0.06 0.82 6.71 37.21 0.25 1.07 16 16 O -0.37 -4.93 10.23 -35.23 -0.36 -5.29 16 17 C 0.09 1.11 1.04 -89.88 -0.09 1.01 16 18 C -0.17 -2.06 5.78 -25.37 -0.15 -2.21 16 19 C 0.05 0.48 7.65 38.00 0.29 0.77 16 20 O -0.37 -4.47 11.65 -35.23 -0.41 -4.88 16 21 C 0.06 0.66 6.92 37.65 0.26 0.92 16 22 C 0.04 0.47 3.97 -3.97 -0.02 0.45 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 25 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 26 H 0.04 0.69 5.94 -51.93 -0.31 0.38 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.65 5.91 -51.93 -0.31 1.34 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.07 0.93 6.80 -51.93 -0.35 0.58 16 34 H 0.10 1.30 7.65 -51.93 -0.40 0.90 16 35 H 0.08 1.05 6.85 -51.93 -0.36 0.69 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.10 0.91 7.84 -51.92 -0.41 0.50 16 40 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -31.52 324.25 -7.86 -39.38 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.74 Total: -2.65 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.49 Total: -3.98 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.34 Total: -34.87 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.13 Total: -19.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.52 -7.86 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.120 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds