Wall clock time and date at job start Mon Mar 30 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.47018 * 111.00401 * 46.45068 * 13 12 11 15 15 C 1.53096 * 109.35739 * 182.84515 * 14 13 12 16 16 O 1.43149 * 109.20727 * 302.62081 * 15 14 13 17 17 C 1.42284 * 113.81614 * 57.53416 * 16 15 14 18 18 C 1.53997 * 110.34657 * 65.50149 * 17 16 15 19 19 C 1.54603 * 103.87672 * 118.55122 * 18 17 16 20 20 O 1.44480 * 104.81849 * 23.90548 * 19 18 17 21 21 C 1.44548 * 105.36833 * 319.82822 * 20 19 18 22 22 C 1.47128 * 111.00219 * 170.00006 * 13 12 11 23 23 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 25 25 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 26 26 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 27 27 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 28 28 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 29 29 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 30 30 H 1.09002 * 109.48869 * 302.81011 * 14 13 12 31 31 H 1.09001 * 109.49111 * 62.88076 * 14 13 12 32 32 H 1.09008 * 109.51406 * 182.70137 * 15 14 13 33 33 H 1.08997 * 109.56224 * 62.56946 * 15 14 13 34 34 H 1.09003 * 110.54143 * 237.14869 * 18 17 16 35 35 H 1.08995 * 110.54491 * 359.94982 * 18 17 16 36 36 H 1.09001 * 110.37033 * 142.73840 * 19 18 17 37 37 H 1.08995 * 110.36612 * 265.06966 * 19 18 17 38 38 H 1.08995 * 110.39529 * 281.18681 * 21 20 19 39 39 H 1.09009 * 110.38991 * 158.79719 * 21 20 19 40 40 H 1.09002 * 109.49153 * 298.67474 * 22 13 12 41 41 H 1.08992 * 109.50008 * 58.73179 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 2.5087 -5.7772 2.4110 15 6 3.3397 -5.6372 3.6892 16 8 4.2185 -6.7612 3.8051 17 6 5.0901 -6.9262 2.6926 18 6 6.0734 -5.7444 2.6029 19 6 7.4621 -6.4045 2.7636 20 8 7.2696 -7.7756 2.3506 21 6 5.9861 -8.1620 2.8917 22 6 4.2976 -7.0517 1.3962 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 0.9453 -4.9822 0.8903 27 1 0.9448 -4.9826 -0.8898 28 1 2.1822 -6.9374 -0.0898 29 1 3.3212 -5.7956 -0.8429 30 1 1.8716 -4.9006 2.2936 31 1 1.8891 -6.6716 2.4762 32 1 2.6759 -5.6033 4.5532 33 1 3.9262 -4.7195 3.6445 34 1 5.9933 -5.2530 1.6332 35 1 5.8919 -5.0337 3.4091 36 1 8.1924 -5.9135 2.1204 37 1 7.7835 -6.3633 3.8043 38 1 6.0765 -8.3987 3.9518 39 1 5.5843 -9.0147 2.3442 40 1 3.7009 -7.9636 1.4215 41 1 4.9849 -7.0901 0.5512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:54 Heat of formation + Delta-G solvation = -146.160699 kcal Electronic energy + Delta-G solvation = -21936.617762 eV Core-core repulsion = 18623.120028 eV Total energy + Delta-G solvation = -3313.497735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70222 -39.41565 -38.44323 -36.70576 -34.87128 -33.18260 -31.32156 -30.99173 -29.29686 -28.38303 -25.84914 -24.57834 -24.38097 -23.72092 -21.95012 -20.40205 -18.62228 -18.18778 -17.60939 -17.49875 -17.22288 -16.76901 -16.36042 -16.02012 -15.89107 -15.82502 -15.31308 -15.15147 -14.78242 -14.50025 -14.11879 -13.70455 -13.51935 -13.21007 -13.02107 -12.81680 -12.75242 -12.55972 -12.53093 -12.20426 -12.15882 -12.03684 -11.75350 -11.39488 -11.26254 -10.85376 -10.78754 -10.63885 -10.19825 -9.29685 -8.31797 -6.43654 1.39854 1.44170 1.52598 2.34592 2.51011 2.71444 3.01493 3.02182 3.19149 3.53779 3.67693 3.85734 3.91911 4.02460 4.14795 4.16321 4.23998 4.27136 4.37031 4.46071 4.51639 4.59355 4.61868 4.66860 4.68820 4.78198 4.80219 4.83149 4.93517 4.97625 4.99050 5.14090 5.18315 5.55225 5.62221 5.93730 5.97234 5.99470 6.18302 6.55395 6.84226 7.28450 8.80224 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.004246 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.170825 B = 6593.627397 C = 7093.561893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.050 3.950 12 C 0.070 3.930 13 N -0.541 5.541 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.376 6.376 17 C 0.086 3.914 18 C -0.170 4.170 19 C 0.048 3.952 20 O -0.385 6.385 21 C 0.064 3.936 22 C 0.041 3.959 23 H 0.270 0.730 24 H -0.017 1.017 25 H -0.016 1.016 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.561 -16.159 6.458 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.027 4.027 12 C -0.057 4.057 13 N -0.266 5.266 14 C -0.111 4.111 15 C -0.010 4.010 16 O -0.295 6.295 17 C 0.045 3.955 18 C -0.208 4.208 19 C -0.029 4.029 20 O -0.304 6.304 21 C -0.013 4.013 22 C -0.087 4.087 23 H 0.079 0.921 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.070 0.930 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.038 -15.853 6.464 19.846 hybrid contribution -1.161 0.630 -0.232 1.341 sum 8.878 -15.223 6.232 18.692 Atomic orbital electron populations 1.70054 1.07715 1.28655 1.50582 1.25913 0.95901 1.03232 0.93946 0.85283 0.78147 0.76937 0.79353 1.19102 1.19977 1.19059 1.21327 0.93982 0.90864 1.52123 0.92232 1.19784 0.88622 0.84897 0.93221 1.87921 1.34627 1.13713 1.95069 1.22705 0.95532 0.84658 0.99839 1.22104 0.95048 0.96112 0.92480 1.62128 1.21484 1.41007 1.02023 1.22801 0.95471 1.01527 0.91317 1.22752 0.92037 0.88762 0.97462 1.87835 1.51188 1.49166 1.41348 1.22527 0.90368 0.96290 0.86272 1.23351 0.95312 0.98365 1.03772 1.23531 0.96745 0.81458 1.01117 1.89156 1.36420 1.28740 1.76049 1.23276 0.81963 0.95263 1.00763 1.22655 0.96341 0.91550 0.98135 0.92076 0.99937 0.99785 0.93616 0.93388 0.91138 0.90018 0.90612 0.93323 0.86370 0.92924 0.90447 0.90286 0.87780 0.90928 0.90191 0.86679 0.93016 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -32.58 9.43 25.60 0.24 -32.34 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.78 5.69 71.24 0.41 12.19 16 10 O -0.39 -19.12 10.27 -148.98 -1.53 -20.65 16 11 C 0.05 1.81 5.43 71.98 0.39 2.20 16 12 C 0.07 2.01 5.66 86.30 0.49 2.50 16 13 N -0.54 -15.68 4.58 -896.21 -4.11 -19.79 16 14 C 0.02 0.47 4.95 86.31 0.43 0.90 16 15 C 0.07 1.68 6.71 72.01 0.48 2.16 16 16 O -0.38 -9.33 10.23 -148.98 -1.52 -10.85 16 17 C 0.09 1.96 1.04 -10.32 -0.01 1.95 16 18 C -0.17 -4.01 5.78 31.48 0.18 -3.83 16 19 C 0.05 0.94 7.65 72.53 0.55 1.49 16 20 O -0.38 -8.49 11.65 -148.98 -1.74 -10.23 16 21 C 0.06 1.24 6.92 72.30 0.50 1.74 16 22 C 0.04 0.96 3.97 86.08 0.34 1.30 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.05 1.61 5.94 -2.39 -0.01 1.60 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.51 5.91 -2.39 -0.01 2.49 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.05 1.48 6.80 -2.39 -0.02 1.46 16 34 H 0.08 2.10 7.65 -2.39 -0.02 2.08 16 35 H 0.08 1.93 6.85 -2.39 -0.02 1.92 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.44 8.07 -2.39 -0.02 1.42 16 39 H 0.12 1.80 7.84 -2.38 -0.02 1.78 16 40 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.30 324.25 -1.12 -68.43 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.00 Total: 11.04 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.47 Total: -8.77 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -3.82 Total: -75.39 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -4.79 Total: -41.73 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.30 -1.12 -68.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.734 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds