Wall clock time and date at job start Mon Mar 30 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46777 * 300.00099 * 3 2 1 6 6 H 1.48502 * 109.46872 * 59.99581 * 3 2 1 7 7 C 1.37884 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99488 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99711 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46827 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46937 * 65.00354 * 12 11 10 14 14 C 1.47013 * 110.99799 * 66.04677 * 13 12 11 15 15 C 1.53090 * 109.39873 * 182.83496 * 14 13 12 16 16 O 1.43145 * 109.19686 * 302.62580 * 15 14 13 17 17 C 1.42301 * 113.81262 * 57.51677 * 16 15 14 18 18 C 1.53968 * 110.37836 * 180.61217 * 17 16 15 19 19 C 1.54616 * 103.88404 * 241.17500 * 18 17 16 20 20 O 1.44473 * 104.82128 * 23.88570 * 19 18 17 21 21 C 1.44546 * 105.36044 * 319.83142 * 20 19 18 22 22 C 1.47169 * 111.01996 * 189.57095 * 13 12 11 23 23 H 0.97003 * 119.99598 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47494 * 60.00539 * 9 7 2 25 25 H 1.09002 * 109.47136 * 300.00065 * 9 7 2 26 26 H 1.09002 * 109.46724 * 60.00778 * 11 10 9 27 27 H 1.08999 * 109.47194 * 300.00181 * 11 10 9 28 28 H 1.09004 * 109.47414 * 305.00614 * 12 11 10 29 29 H 1.09003 * 109.47179 * 185.00073 * 12 11 10 30 30 H 1.09002 * 109.48832 * 62.85014 * 14 13 12 31 31 H 1.09002 * 109.48180 * 302.81315 * 14 13 12 32 32 H 1.09000 * 109.52115 * 62.54103 * 15 14 13 33 33 H 1.09000 * 109.52165 * 182.71448 * 15 14 13 34 34 H 1.08994 * 110.54897 * 359.78064 * 18 17 16 35 35 H 1.09007 * 110.54686 * 122.57995 * 18 17 16 36 36 H 1.09001 * 110.36701 * 142.71654 * 19 18 17 37 37 H 1.08993 * 110.37249 * 265.04771 * 19 18 17 38 38 H 1.08996 * 110.39410 * 281.20742 * 21 20 19 39 39 H 1.09004 * 110.39256 * 158.81494 * 21 20 19 40 40 H 1.08997 * 109.49118 * 58.80027 * 22 13 12 41 41 H 1.08996 * 109.49749 * 298.70023 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4088 -5.8877 1.2541 14 6 2.5627 -6.2411 2.4033 15 6 3.3704 -6.0896 3.6950 16 8 4.5369 -6.9158 3.6203 17 6 5.3732 -6.6296 2.5051 18 6 6.5918 -7.5707 2.4933 19 6 7.8005 -6.6141 2.6148 20 8 7.2698 -5.4259 3.2422 21 6 5.9746 -5.2182 2.6351 22 6 4.5973 -6.7539 1.1987 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 0.9446 -4.9827 -0.8898 27 1 0.9450 -4.9822 0.8902 28 1 3.3209 -5.7957 -0.8429 29 1 2.1818 -6.9376 -0.0898 30 1 2.2265 -7.2731 2.3036 31 1 1.6979 -5.5784 2.4354 32 1 3.6688 -5.0485 3.8180 33 1 2.7602 -6.3972 4.5442 34 1 6.5568 -8.2526 3.3428 35 1 6.6367 -8.1267 1.5568 36 1 8.5752 -7.0591 3.2392 37 1 8.1973 -6.3769 1.6277 38 1 6.0849 -4.7604 1.6521 39 1 5.3497 -4.5968 3.2766 40 1 5.2325 -6.4470 0.3677 41 1 4.2868 -7.7890 1.0570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339096048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:57 Heat of formation + Delta-G solvation = -124.526121 kcal Electronic energy + Delta-G solvation = -21928.987039 eV Core-core repulsion = 18616.427450 eV Total energy + Delta-G solvation = -3312.559589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70015 -38.13903 -36.85612 -35.36704 -32.73158 -32.54583 -30.00648 -29.67968 -27.78712 -26.70074 -24.61516 -23.85145 -22.46797 -22.23625 -20.70346 -19.61409 -17.16291 -16.56671 -16.31338 -16.05356 -15.82157 -15.58612 -15.21157 -14.64192 -14.59775 -14.25144 -14.18709 -13.98778 -13.37435 -13.06205 -12.75863 -12.31843 -12.08250 -11.94714 -11.68384 -11.61157 -11.39740 -11.22818 -11.15271 -10.81258 -10.76138 -10.57056 -10.34586 -10.04360 -9.82341 -9.45735 -9.06383 -8.79964 -8.24961 -8.12732 -6.09367 -4.10298 3.30643 3.37264 3.44233 3.57016 3.73767 3.91024 4.36370 4.49340 4.62308 4.69300 4.85096 4.90714 4.95330 5.05277 5.19371 5.27466 5.28166 5.40006 5.47260 5.51098 5.51833 5.55471 5.60216 5.67380 5.79329 5.82065 5.87745 5.95791 6.05594 6.09916 6.22034 6.66595 7.00768 7.04256 7.12423 7.18361 7.44221 7.82667 8.18068 8.61955 9.04447 9.54760 11.02349 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.004520 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.193783 B = 6192.913808 C = 6927.242779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.066 3.934 12 C 0.062 3.938 13 N -0.521 5.521 14 C 0.016 3.984 15 C 0.059 3.941 16 O -0.369 6.369 17 C 0.092 3.908 18 C -0.143 4.143 19 C 0.046 3.954 20 O -0.374 6.374 21 C 0.034 3.966 22 C 0.036 3.964 23 H 0.263 0.737 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -17.164 4.040 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.012 4.012 12 C -0.066 4.066 13 N -0.245 5.245 14 C -0.112 4.112 15 C -0.017 4.017 16 O -0.288 6.288 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.031 4.031 20 O -0.293 6.293 21 C -0.043 4.043 22 C -0.092 4.092 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.658 -16.528 4.394 19.640 hybrid contribution -0.659 0.093 -0.532 0.853 sum 8.998 -16.435 3.862 19.131 Atomic orbital electron populations 1.69972 1.06116 1.26973 1.50911 1.24943 0.94944 0.99409 0.95224 0.86309 0.80112 0.82675 0.77585 1.19435 1.20896 1.20861 1.21093 0.94108 0.89301 1.50315 0.91477 1.20185 0.88846 0.83909 0.95098 1.87948 1.34672 1.12291 1.95019 1.22250 0.93739 0.86286 0.98921 1.22172 0.96298 0.96312 0.91798 1.62173 1.07238 1.52067 1.03065 1.22838 0.97319 0.99650 0.91442 1.22777 0.86049 0.95995 0.96916 1.87911 1.35088 1.59830 1.45988 1.22388 0.90741 0.95274 0.86484 1.22902 0.92745 0.98553 1.03854 1.23424 0.95937 0.85464 0.98297 1.89169 1.32565 1.44822 1.62736 1.23934 0.84107 0.96339 0.99917 1.22663 0.93534 0.95487 0.97510 0.92779 0.98013 0.97951 0.94172 0.94566 0.89892 0.94202 0.94432 0.88810 0.91435 0.88240 0.89231 0.89526 0.89021 0.92080 0.90478 0.88083 0.89367 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.40 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.32 5.69 36.00 0.20 5.52 16 10 O -0.38 -9.07 10.27 -35.23 -0.36 -9.43 16 11 C 0.07 1.19 6.00 37.16 0.22 1.42 16 12 C 0.06 0.89 5.34 -3.82 -0.02 0.87 16 13 N -0.52 -7.58 4.50 -234.58 -1.05 -8.63 16 14 C 0.02 0.21 5.43 -3.72 -0.02 0.19 16 15 C 0.06 0.75 6.75 37.20 0.25 1.00 16 16 O -0.37 -5.03 10.23 -35.23 -0.36 -5.39 16 17 C 0.09 1.14 1.04 -89.89 -0.09 1.04 16 18 C -0.14 -1.39 6.53 -25.38 -0.17 -1.56 16 19 C 0.05 0.46 7.65 38.01 0.29 0.75 16 20 O -0.37 -5.33 11.65 -35.23 -0.41 -5.74 16 21 C 0.03 0.47 6.54 37.66 0.25 0.72 16 22 C 0.04 0.44 4.03 -3.95 -0.02 0.43 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 24 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.64 6.28 -51.93 -0.33 0.31 16 28 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 29 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 1.33 6.26 -51.93 -0.32 1.00 16 32 H 0.07 0.93 6.39 -51.93 -0.33 0.60 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 35 H 0.09 0.66 7.71 -51.93 -0.40 0.26 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.11 7.75 -51.93 -0.40 0.70 16 39 H 0.10 1.54 6.16 -51.93 -0.32 1.22 16 40 H 0.09 1.01 7.99 -51.93 -0.41 0.59 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -32.72 324.66 -7.80 -40.53 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.70 Total: -3.44 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.48 Total: -3.49 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.32 Total: -34.92 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.13 Total: -20.56 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.72 -7.80 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.998 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds