Wall clock time and date at job start Mon Mar 30 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46777 * 300.00099 * 3 2 1 6 6 H 1.48502 * 109.46872 * 59.99581 * 3 2 1 7 7 C 1.37884 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99488 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99711 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46827 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46937 * 65.00354 * 12 11 10 14 14 C 1.47013 * 110.99799 * 66.04677 * 13 12 11 15 15 C 1.53090 * 109.39873 * 182.83496 * 14 13 12 16 16 O 1.43145 * 109.19686 * 302.62580 * 15 14 13 17 17 C 1.42301 * 113.81262 * 57.51677 * 16 15 14 18 18 C 1.53968 * 110.37836 * 180.61217 * 17 16 15 19 19 C 1.54616 * 103.88404 * 241.17500 * 18 17 16 20 20 O 1.44473 * 104.82128 * 23.88570 * 19 18 17 21 21 C 1.44546 * 105.36044 * 319.83142 * 20 19 18 22 22 C 1.47169 * 111.01996 * 189.57095 * 13 12 11 23 23 H 0.97003 * 119.99598 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47494 * 60.00539 * 9 7 2 25 25 H 1.09002 * 109.47136 * 300.00065 * 9 7 2 26 26 H 1.09002 * 109.46724 * 60.00778 * 11 10 9 27 27 H 1.08999 * 109.47194 * 300.00181 * 11 10 9 28 28 H 1.09004 * 109.47414 * 305.00614 * 12 11 10 29 29 H 1.09003 * 109.47179 * 185.00073 * 12 11 10 30 30 H 1.09002 * 109.48832 * 62.85014 * 14 13 12 31 31 H 1.09002 * 109.48180 * 302.81315 * 14 13 12 32 32 H 1.09000 * 109.52115 * 62.54103 * 15 14 13 33 33 H 1.09000 * 109.52165 * 182.71448 * 15 14 13 34 34 H 1.08994 * 110.54897 * 359.78064 * 18 17 16 35 35 H 1.09007 * 110.54686 * 122.57995 * 18 17 16 36 36 H 1.09001 * 110.36701 * 142.71654 * 19 18 17 37 37 H 1.08993 * 110.37249 * 265.04771 * 19 18 17 38 38 H 1.08996 * 110.39410 * 281.20742 * 21 20 19 39 39 H 1.09004 * 110.39256 * 158.81494 * 21 20 19 40 40 H 1.08997 * 109.49118 * 58.80027 * 22 13 12 41 41 H 1.08996 * 109.49749 * 298.70023 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 7 3.4088 -5.8877 1.2541 14 6 2.5627 -6.2411 2.4033 15 6 3.3704 -6.0896 3.6950 16 8 4.5369 -6.9158 3.6203 17 6 5.3732 -6.6296 2.5051 18 6 6.5918 -7.5707 2.4933 19 6 7.8005 -6.6141 2.6148 20 8 7.2698 -5.4259 3.2422 21 6 5.9746 -5.2182 2.6351 22 6 4.5973 -6.7539 1.1987 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 0.9446 -4.9827 -0.8898 27 1 0.9450 -4.9822 0.8902 28 1 3.3209 -5.7957 -0.8429 29 1 2.1818 -6.9376 -0.0898 30 1 2.2265 -7.2731 2.3036 31 1 1.6979 -5.5784 2.4354 32 1 3.6688 -5.0485 3.8180 33 1 2.7602 -6.3972 4.5442 34 1 6.5568 -8.2526 3.3428 35 1 6.6367 -8.1267 1.5568 36 1 8.5752 -7.0591 3.2392 37 1 8.1973 -6.3769 1.6277 38 1 6.0849 -4.7604 1.6521 39 1 5.3497 -4.5968 3.2766 40 1 5.2325 -6.4470 0.3677 41 1 4.2868 -7.7890 1.0570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339096048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:56 Heat of formation + Delta-G solvation = -149.490160 kcal Electronic energy + Delta-G solvation = -21930.069561 eV Core-core repulsion = 18616.427450 eV Total energy + Delta-G solvation = -3313.642111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68930 -39.28083 -38.38249 -36.66572 -34.87287 -33.55189 -31.36389 -30.57381 -29.35349 -28.35015 -25.71618 -24.90375 -24.46062 -23.40037 -21.84556 -20.62246 -18.62433 -18.16162 -17.57956 -17.39044 -17.15086 -16.73046 -16.43350 -16.23416 -15.92257 -15.61403 -15.35426 -15.18325 -14.66389 -14.60401 -13.79165 -13.71086 -13.58675 -13.09464 -12.99474 -12.79928 -12.68055 -12.61543 -12.53341 -12.40010 -12.18169 -12.09956 -11.76936 -11.39682 -11.21849 -10.86237 -10.85583 -10.49185 -10.17357 -9.27773 -8.31939 -6.43273 1.39584 1.40639 1.55545 2.34943 2.59960 2.72673 2.99018 3.02126 3.22586 3.57647 3.69502 3.77879 3.92328 4.02414 4.13987 4.16701 4.25474 4.33655 4.41831 4.47886 4.51545 4.54747 4.60569 4.63822 4.77314 4.79111 4.82271 4.82944 4.93183 4.96148 5.00431 5.06688 5.19859 5.56213 5.72250 5.95940 5.98559 5.99960 6.19353 6.57431 6.86970 7.29113 8.80616 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.004520 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.193783 B = 6192.913808 C = 6927.242779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.056 3.944 12 C 0.071 3.929 13 N -0.548 5.548 14 C 0.019 3.981 15 C 0.060 3.940 16 O -0.377 6.377 17 C 0.088 3.912 18 C -0.134 4.134 19 C 0.039 3.961 20 O -0.401 6.401 21 C 0.034 3.966 22 C 0.041 3.959 23 H 0.270 0.730 24 H -0.016 1.016 25 H -0.018 1.018 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.428 -18.239 3.732 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.314 6.314 11 C -0.021 4.021 12 C -0.056 4.056 13 N -0.274 5.274 14 C -0.109 4.109 15 C -0.017 4.017 16 O -0.296 6.296 17 C 0.048 3.952 18 C -0.172 4.172 19 C -0.038 4.038 20 O -0.321 6.321 21 C -0.043 4.043 22 C -0.087 4.087 23 H 0.079 0.921 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.777 -17.635 4.085 21.067 hybrid contribution -1.012 0.357 -0.419 1.152 sum 9.764 -17.278 3.666 20.182 Atomic orbital electron populations 1.70069 1.07693 1.28489 1.50806 1.25910 0.95908 1.03229 0.94009 0.85188 0.78671 0.77580 0.78296 1.19007 1.19532 1.19726 1.21396 0.93970 0.90923 1.51792 0.92296 1.19776 0.88637 0.84974 0.93146 1.87902 1.34620 1.13807 1.95054 1.22610 0.95496 0.84600 0.99432 1.22075 0.95425 0.96075 0.92018 1.62099 1.08236 1.53807 1.03253 1.22784 0.96714 1.00093 0.91278 1.22809 0.86195 0.95028 0.97643 1.87904 1.35291 1.59730 1.46680 1.22530 0.91475 0.94831 0.86374 1.22933 0.90850 0.97977 1.05437 1.23715 0.96506 0.84241 0.99294 1.89134 1.32612 1.46796 1.63522 1.23829 0.84322 0.97414 0.98747 1.22682 0.92528 0.95943 0.97515 0.92099 0.99825 1.00015 0.93377 0.94283 0.89716 0.90939 0.92746 0.90349 0.93465 0.86104 0.88977 0.86788 0.87108 0.90658 0.91386 0.90355 0.88614 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 45.07 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -32.83 9.43 25.60 0.24 -32.59 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.91 5.69 71.24 0.41 12.31 16 10 O -0.39 -19.27 10.27 -148.98 -1.53 -20.80 16 11 C 0.06 2.02 6.00 71.98 0.43 2.45 16 12 C 0.07 1.95 5.34 86.30 0.46 2.41 16 13 N -0.55 -15.38 4.50 -896.09 -4.03 -19.41 16 14 C 0.02 0.50 5.43 86.31 0.47 0.96 16 15 C 0.06 1.50 6.75 72.01 0.49 1.99 16 16 O -0.38 -9.83 10.23 -148.98 -1.52 -11.35 16 17 C 0.09 2.07 1.04 -10.32 -0.01 2.06 16 18 C -0.13 -2.27 6.53 31.47 0.21 -2.06 16 19 C 0.04 0.70 7.65 72.53 0.55 1.26 16 20 O -0.40 -11.30 11.65 -148.98 -1.74 -13.04 16 21 C 0.03 0.96 6.54 72.31 0.47 1.43 16 22 C 0.04 0.91 4.03 86.07 0.35 1.26 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.38 6.28 -2.39 -0.02 1.37 16 28 H 0.08 2.29 8.06 -2.38 -0.02 2.27 16 29 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 2.23 6.26 -2.39 -0.01 2.22 16 32 H 0.05 1.37 6.39 -2.39 -0.02 1.36 16 33 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 1.54 7.99 -2.39 -0.02 1.52 16 35 H 0.11 1.31 7.71 -2.38 -0.02 1.29 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 2.00 7.75 -2.39 -0.02 1.98 16 39 H 0.08 2.53 6.16 -2.38 -0.01 2.51 16 40 H 0.10 1.97 7.99 -2.39 -0.02 1.95 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -71.08 324.66 -0.98 -72.07 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.00 Total: 9.15 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.53 Total: -7.61 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -3.74 Total: -75.52 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -4.79 Total: -45.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.08 -0.98 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339096048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.425 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds