Wall clock time and date at job start Mon Mar 30 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47169 * 239.99539 * 3 2 1 5 5 H 1.48505 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46782 * 119.99602 * 3 2 1 7 7 C 1.37882 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99722 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00005 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46963 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47140 * 67.19583 * 12 11 10 14 14 C 1.47203 * 111.00299 * 286.86919 * 13 12 11 15 15 C 1.53106 * 109.16562 * 179.09539 * 14 13 12 16 16 O 1.43031 * 109.41658 * 57.61452 * 15 14 13 17 17 C 1.43200 * 113.60447 * 300.63288 * 16 15 14 18 18 C 1.45913 * 111.00060 * 163.07824 * 13 12 11 19 19 C 1.54472 * 110.68185 * 56.43906 * 18 13 12 20 20 C 1.54531 * 102.16077 * 208.73126 * 19 18 13 21 21 O 1.43310 * 107.60903 * 20.65983 * 20 19 18 22 22 C 1.43812 * 110.02070 * 1.57944 * 21 20 19 23 23 H 0.97002 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46982 * 59.99751 * 9 7 2 25 25 H 1.09000 * 109.47537 * 299.99818 * 9 7 2 26 26 H 1.08999 * 109.47005 * 59.99762 * 11 10 9 27 27 H 1.09005 * 109.46802 * 300.00017 * 11 10 9 28 28 H 1.08997 * 109.47248 * 307.19703 * 12 11 10 29 29 H 1.08993 * 109.46928 * 187.19885 * 12 11 10 30 30 H 1.08997 * 109.52216 * 59.18389 * 14 13 12 31 31 H 1.08998 * 109.51924 * 299.00195 * 14 13 12 32 32 H 1.08997 * 109.47935 * 297.63215 * 15 14 13 33 33 H 1.08994 * 109.48730 * 177.60005 * 15 14 13 34 34 H 1.09003 * 109.49249 * 297.10883 * 17 16 15 35 35 H 1.09002 * 109.49199 * 177.04019 * 17 16 15 36 36 H 1.09004 * 110.86491 * 90.56377 * 19 18 13 37 37 H 1.09001 * 111.04187 * 326.97670 * 19 18 13 38 38 H 1.08998 * 109.82407 * 261.14090 * 20 19 18 39 39 H 1.08998 * 109.90042 * 140.21680 * 20 19 18 40 40 H 1.09007 * 110.31847 * 95.38285 * 22 21 20 41 41 H 1.08991 * 110.32367 * 217.58743 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.3728 -5.9223 1.2779 14 6 4.2600 -4.7499 1.3500 15 6 4.9757 -4.7438 2.7035 16 8 5.7032 -5.9650 2.8623 17 6 4.8791 -7.1348 2.8057 18 6 4.1235 -7.1560 1.4860 19 6 5.0923 -7.4101 0.3100 20 6 5.1936 -8.9520 0.2989 21 8 4.0461 -9.4668 0.9860 22 6 3.1970 -8.3846 1.4056 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.9451 -4.9822 -0.8903 27 1 0.9445 -4.9827 0.8897 28 1 3.3446 -5.7731 -0.8174 29 1 2.1850 -6.9344 -0.1286 30 1 3.6698 -3.8395 1.2459 31 1 4.9969 -4.8010 0.5485 32 1 4.2406 -4.6520 3.5030 33 1 5.6660 -3.9014 2.7459 34 1 4.1680 -7.1191 3.6316 35 1 5.5046 -8.0243 2.8808 36 1 6.0653 -6.9585 0.5040 37 1 4.6753 -7.0417 -0.6272 38 1 6.1029 -9.2665 0.8110 39 1 5.2032 -9.3158 -0.7285 40 1 2.4081 -8.2163 0.6724 41 1 2.7664 -8.5986 2.3837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339161847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:00 Heat of formation + Delta-G solvation = -120.043624 kcal Electronic energy + Delta-G solvation = -22330.265750 eV Core-core repulsion = 19017.900536 eV Total energy + Delta-G solvation = -3312.365213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02381 -38.04843 -37.11633 -35.37267 -32.79085 -31.98439 -30.31887 -29.76718 -27.33106 -26.73606 -25.69100 -22.89423 -22.41042 -22.24761 -21.55453 -19.05275 -17.29037 -16.79683 -16.45327 -15.99374 -15.78706 -15.47021 -15.07447 -15.03088 -14.42715 -14.36264 -14.17883 -13.74550 -13.55462 -13.33602 -12.88169 -12.51563 -11.85694 -11.76335 -11.67170 -11.54879 -11.41703 -11.12601 -11.04545 -10.87956 -10.78726 -10.57736 -10.40109 -10.07909 -9.69423 -9.43547 -9.14158 -8.83092 -8.25916 -8.17144 -6.14989 -4.17361 3.28628 3.32128 3.35121 3.52756 3.78179 3.92714 4.29159 4.44554 4.56847 4.68192 4.79141 4.84676 4.94960 5.12029 5.21679 5.33809 5.38004 5.42540 5.46916 5.52748 5.54733 5.61231 5.66097 5.78156 5.82497 5.85193 5.98992 6.02200 6.13901 6.27488 6.55960 6.74774 7.05889 7.07839 7.10028 7.24686 7.39522 7.73411 8.10409 8.50864 8.94920 9.47768 10.96341 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.004426 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.422808 B = 6324.551332 C = 6852.203623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.067 3.933 12 C 0.050 3.950 13 N -0.512 5.512 14 C 0.013 3.987 15 C 0.060 3.940 16 O -0.386 6.386 17 C 0.084 3.916 18 C 0.044 3.956 19 C -0.185 4.185 20 C 0.055 3.945 21 O -0.385 6.385 22 C 0.059 3.941 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 -15.704 2.837 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.314 6.314 11 C -0.011 4.011 12 C -0.077 4.077 13 N -0.236 5.236 14 C -0.113 4.113 15 C -0.017 4.017 16 O -0.305 6.305 17 C 0.007 3.993 18 C -0.047 4.047 19 C -0.224 4.224 20 C -0.022 4.022 21 O -0.303 6.303 22 C -0.018 4.018 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.007 -15.717 3.281 17.941 hybrid contribution 0.349 1.079 -0.888 1.441 sum 8.356 -14.637 2.393 17.023 Atomic orbital electron populations 1.69946 1.06118 1.27307 1.50250 1.24935 0.94942 0.99393 0.95079 0.86423 0.79349 0.82038 0.78822 1.20070 1.21148 1.19978 1.20985 0.93870 0.89386 1.51221 0.91715 1.20186 0.88769 0.83484 0.95410 1.87769 1.35496 1.13184 1.94944 1.22250 0.94104 0.85133 0.99582 1.22395 0.96495 0.98802 0.90026 1.61940 1.27082 1.00795 1.33815 1.23199 0.95746 0.95962 0.96441 1.22791 0.95809 0.86281 0.96796 1.88006 1.34611 1.14350 1.93490 1.22332 0.93907 0.88893 0.94201 1.22707 0.93246 0.92337 0.96449 1.23674 1.02278 0.96297 1.00125 1.23076 0.89144 0.92971 0.97032 1.88441 1.34825 1.31082 1.75986 1.23413 0.92772 0.84560 1.01042 0.92564 0.97856 0.97616 0.93960 0.93423 0.93619 0.89686 0.84998 0.94283 0.92200 0.88333 0.92126 0.88593 0.89242 0.90046 0.91244 0.91523 0.90774 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.63 9.43 -34.44 -0.32 -14.95 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.20 5.15 5.69 36.00 0.20 5.35 16 10 O -0.39 -8.77 7.36 -35.23 -0.26 -9.03 16 11 C 0.07 1.18 6.23 37.16 0.23 1.42 16 12 C 0.05 0.72 4.50 -3.83 -0.02 0.70 16 13 N -0.51 -7.34 4.51 -218.37 -0.98 -8.32 16 14 C 0.01 0.21 5.06 -3.60 -0.02 0.19 16 15 C 0.06 0.84 6.98 37.21 0.26 1.10 16 16 O -0.39 -5.34 10.47 -35.23 -0.37 -5.71 16 17 C 0.08 1.00 5.65 36.69 0.21 1.21 16 18 C 0.04 0.54 0.58 -131.26 -0.08 0.46 16 19 C -0.18 -2.10 4.90 -25.15 -0.12 -2.22 16 20 C 0.05 0.56 7.42 37.96 0.28 0.84 16 21 O -0.38 -4.60 11.36 -35.23 -0.40 -5.00 16 22 C 0.06 0.66 6.72 37.73 0.25 0.91 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.68 6.69 -51.93 -0.35 0.33 16 29 H 0.09 1.04 5.28 -51.93 -0.27 0.76 16 30 H 0.13 2.51 5.37 -51.93 -0.28 2.23 16 31 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.02 7.79 -51.93 -0.40 0.62 16 36 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16 37 H 0.08 0.97 5.97 -51.93 -0.31 0.66 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.83 5.39 -51.93 -0.28 0.55 16 41 H 0.09 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -29.97 315.50 -7.21 -37.18 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.45 Total: -1.13 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.25 Total: -33.96 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.03 Total: -19.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.97 -7.21 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339161847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.862 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds