Wall clock time and date at job start Mon Mar 30 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47169 * 239.99539 * 3 2 1 5 5 H 1.48505 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46782 * 119.99602 * 3 2 1 7 7 C 1.37882 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99722 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00005 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46963 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47140 * 67.19583 * 12 11 10 14 14 C 1.47203 * 111.00299 * 286.86919 * 13 12 11 15 15 C 1.53106 * 109.16562 * 179.09539 * 14 13 12 16 16 O 1.43031 * 109.41658 * 57.61452 * 15 14 13 17 17 C 1.43200 * 113.60447 * 300.63288 * 16 15 14 18 18 C 1.45913 * 111.00060 * 163.07824 * 13 12 11 19 19 C 1.54472 * 110.68185 * 56.43906 * 18 13 12 20 20 C 1.54531 * 102.16077 * 208.73126 * 19 18 13 21 21 O 1.43310 * 107.60903 * 20.65983 * 20 19 18 22 22 C 1.43812 * 110.02070 * 1.57944 * 21 20 19 23 23 H 0.97002 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46982 * 59.99751 * 9 7 2 25 25 H 1.09000 * 109.47537 * 299.99818 * 9 7 2 26 26 H 1.08999 * 109.47005 * 59.99762 * 11 10 9 27 27 H 1.09005 * 109.46802 * 300.00017 * 11 10 9 28 28 H 1.08997 * 109.47248 * 307.19703 * 12 11 10 29 29 H 1.08993 * 109.46928 * 187.19885 * 12 11 10 30 30 H 1.08997 * 109.52216 * 59.18389 * 14 13 12 31 31 H 1.08998 * 109.51924 * 299.00195 * 14 13 12 32 32 H 1.08997 * 109.47935 * 297.63215 * 15 14 13 33 33 H 1.08994 * 109.48730 * 177.60005 * 15 14 13 34 34 H 1.09003 * 109.49249 * 297.10883 * 17 16 15 35 35 H 1.09002 * 109.49199 * 177.04019 * 17 16 15 36 36 H 1.09004 * 110.86491 * 90.56377 * 19 18 13 37 37 H 1.09001 * 111.04187 * 326.97670 * 19 18 13 38 38 H 1.08998 * 109.82407 * 261.14090 * 20 19 18 39 39 H 1.08998 * 109.90042 * 140.21680 * 20 19 18 40 40 H 1.09007 * 110.31847 * 95.38285 * 22 21 20 41 41 H 1.08991 * 110.32367 * 217.58743 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.3728 -5.9223 1.2779 14 6 4.2600 -4.7499 1.3500 15 6 4.9757 -4.7438 2.7035 16 8 5.7032 -5.9650 2.8623 17 6 4.8791 -7.1348 2.8057 18 6 4.1235 -7.1560 1.4860 19 6 5.0923 -7.4101 0.3100 20 6 5.1936 -8.9520 0.2989 21 8 4.0461 -9.4668 0.9860 22 6 3.1970 -8.3846 1.4056 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 0.9451 -4.9822 -0.8903 27 1 0.9445 -4.9827 0.8897 28 1 3.3446 -5.7731 -0.8174 29 1 2.1850 -6.9344 -0.1286 30 1 3.6698 -3.8395 1.2459 31 1 4.9969 -4.8010 0.5485 32 1 4.2406 -4.6520 3.5030 33 1 5.6660 -3.9014 2.7459 34 1 4.1680 -7.1191 3.6316 35 1 5.5046 -8.0243 2.8808 36 1 6.0653 -6.9585 0.5040 37 1 4.6753 -7.0417 -0.6272 38 1 6.1029 -9.2665 0.8110 39 1 5.2032 -9.3158 -0.7285 40 1 2.4081 -8.2163 0.6724 41 1 2.7664 -8.5986 2.3837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339161847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:59 Heat of formation + Delta-G solvation = -142.140309 kcal Electronic energy + Delta-G solvation = -22331.223934 eV Core-core repulsion = 19017.900536 eV Total energy + Delta-G solvation = -3313.323398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03416 -39.09844 -38.66952 -36.67116 -34.87870 -33.05471 -31.56503 -30.80583 -29.23168 -27.80612 -26.96565 -24.51144 -23.80316 -23.33813 -22.83490 -20.10016 -18.64797 -18.29995 -17.81131 -17.41207 -16.92114 -16.76902 -16.56078 -16.23397 -16.01285 -15.46485 -15.36322 -15.04206 -14.68860 -14.58493 -14.43061 -13.70408 -13.41144 -13.20768 -13.03372 -12.74159 -12.64657 -12.63700 -12.57604 -12.24977 -12.18822 -12.03481 -11.68542 -11.51606 -11.25836 -10.87320 -10.68735 -10.38871 -10.12806 -9.37750 -8.30845 -6.42784 1.40684 1.44510 1.52820 2.34547 2.50233 2.77698 2.96780 3.03622 3.15191 3.54461 3.61239 3.74606 3.83258 4.01349 4.10573 4.23205 4.26004 4.28000 4.38504 4.51854 4.52816 4.57742 4.65611 4.72635 4.76817 4.82106 4.85321 4.88915 4.90065 4.99898 5.06668 5.19917 5.24818 5.55611 5.85493 5.88483 5.97597 6.02907 6.14457 6.54152 6.82927 7.29091 8.81150 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.004426 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.422808 B = 6324.551332 C = 6852.203623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.397 6.397 11 C 0.059 3.941 12 C 0.060 3.940 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.065 3.935 16 O -0.393 6.393 17 C 0.081 3.919 18 C 0.043 3.957 19 C -0.180 4.180 20 C 0.056 3.944 21 O -0.395 6.395 22 C 0.062 3.938 23 H 0.270 0.730 24 H -0.018 1.018 25 H -0.016 1.016 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 -16.448 3.029 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.136 3.864 10 O -0.317 6.317 11 C -0.018 4.018 12 C -0.067 4.067 13 N -0.244 5.244 14 C -0.107 4.107 15 C -0.011 4.011 16 O -0.311 6.311 17 C 0.004 3.996 18 C -0.048 4.048 19 C -0.219 4.219 20 C -0.020 4.020 21 O -0.314 6.314 22 C -0.014 4.014 23 H 0.078 0.922 24 H 0.000 1.000 25 H 0.002 0.998 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.220 -16.495 3.474 19.213 hybrid contribution -0.046 1.196 -0.946 1.525 sum 9.174 -15.299 2.529 18.017 Atomic orbital electron populations 1.70062 1.07783 1.28596 1.50597 1.25910 0.95854 1.03262 0.94047 0.85297 0.78126 0.77032 0.79354 1.19150 1.20288 1.18911 1.21330 0.94049 0.90702 1.52025 0.91843 1.19769 0.88637 0.84753 0.93251 1.87788 1.34870 1.14141 1.94926 1.22542 0.95569 0.83873 0.99816 1.22331 0.95591 0.98655 0.90113 1.61878 1.27422 1.01444 1.33620 1.22977 0.95230 0.95140 0.97380 1.22715 0.95877 0.86984 0.95569 1.87999 1.35056 1.14631 1.93433 1.22502 0.94200 0.88766 0.94149 1.22774 0.93613 0.91473 0.96972 1.23608 1.01665 0.97340 0.99326 1.23164 0.89182 0.91800 0.97882 1.88437 1.35351 1.31341 1.76236 1.23410 0.92447 0.83841 1.01728 0.92155 0.99976 0.99840 0.93200 0.93679 0.93979 0.86841 0.88518 0.94852 0.92413 0.87453 0.91688 0.86842 0.89725 0.90682 0.89846 0.90359 0.90622 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.44 5.46 84.66 0.46 0.91 16 3 Si 0.98 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.41 9.43 25.60 0.24 -31.16 16 8 H 0.06 3.59 7.81 -2.92 -0.02 3.57 16 9 C 0.21 11.51 5.69 71.23 0.41 11.92 16 10 O -0.40 -18.21 7.36 -148.98 -1.10 -19.31 16 11 C 0.06 2.11 6.23 71.98 0.45 2.55 16 12 C 0.06 1.68 4.50 86.30 0.39 2.07 16 13 N -0.52 -14.47 4.51 -844.79 -3.81 -18.28 16 14 C 0.02 0.63 5.06 86.28 0.44 1.07 16 15 C 0.07 1.79 6.98 72.02 0.50 2.29 16 16 O -0.39 -10.28 10.47 -148.98 -1.56 -11.84 16 17 C 0.08 1.76 5.65 71.68 0.40 2.17 16 18 C 0.04 0.96 0.58 4.28 0.00 0.96 16 19 C -0.18 -3.76 4.90 31.62 0.16 -3.61 16 20 C 0.06 1.00 7.42 72.50 0.54 1.54 16 21 O -0.39 -8.36 11.36 -148.98 -1.69 -10.05 16 22 C 0.06 1.25 6.72 72.35 0.49 1.73 16 23 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 24 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.04 1.22 6.69 -2.39 -0.02 1.21 16 29 H 0.11 2.54 5.28 -2.39 -0.01 2.52 16 30 H 0.10 3.79 5.37 -2.39 -0.01 3.77 16 31 H 0.03 1.06 7.45 -2.39 -0.02 1.04 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 2.10 7.79 -2.39 -0.02 2.08 16 36 H 0.08 1.86 7.71 -2.39 -0.02 1.84 16 37 H 0.07 1.67 5.97 -2.39 -0.01 1.65 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.49 5.39 -2.38 -0.01 1.48 16 41 H 0.10 1.85 8.02 -2.39 -0.02 1.83 16 Total: -1.00 -64.16 315.50 -0.37 -64.53 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.01 Total: 11.99 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 4.47 Total: -7.56 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -3.52 Total: -73.41 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -4.35 Total: -41.19 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.16 -0.37 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339161847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.615 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds