Wall clock time and date at job start Mon Mar 30 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00348 * 3 2 1 5 5 H 1.48499 * 109.47148 * 30.00502 * 3 2 1 6 6 H 1.48495 * 109.46877 * 150.00241 * 3 2 1 7 7 C 1.37876 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99760 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00011 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46959 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47125 * 64.99613 * 12 11 10 14 14 C 1.47172 * 111.00089 * 46.21957 * 13 12 11 15 15 C 1.53104 * 109.17562 * 181.07857 * 14 13 12 16 16 O 1.43030 * 109.39267 * 302.45245 * 15 14 13 17 17 C 1.43177 * 113.62199 * 59.31370 * 16 15 14 18 18 C 1.46064 * 110.99955 * 169.99739 * 13 12 11 19 19 C 1.54077 * 110.68378 * 303.13131 * 18 13 12 20 20 C 1.54256 * 104.00623 * 97.94649 * 19 18 13 21 21 O 1.43801 * 107.27028 * 357.58087 * 20 19 18 22 22 C 1.44511 * 107.09955 * 26.25296 * 21 20 19 23 23 H 0.97001 * 119.99703 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47158 * 60.00754 * 9 7 2 25 25 H 1.08996 * 109.47587 * 299.99973 * 9 7 2 26 26 H 1.08997 * 109.47081 * 60.00248 * 11 10 9 27 27 H 1.08994 * 109.47053 * 299.99961 * 11 10 9 28 28 H 1.09002 * 109.46778 * 305.00225 * 12 11 10 29 29 H 1.08999 * 109.46879 * 185.00015 * 12 11 10 30 30 H 1.09007 * 109.52363 * 300.98703 * 14 13 12 31 31 H 1.08999 * 109.52456 * 61.10489 * 14 13 12 32 32 H 1.09000 * 109.48584 * 62.43617 * 15 14 13 33 33 H 1.09005 * 109.48218 * 182.47880 * 15 14 13 34 34 H 1.09007 * 109.48875 * 182.77193 * 17 16 15 35 35 H 1.09001 * 109.49750 * 62.70041 * 17 16 15 36 36 H 1.09001 * 110.52092 * 339.31275 * 19 18 13 37 37 H 1.09004 * 110.51960 * 216.58161 * 19 18 13 38 38 H 1.09005 * 109.88132 * 116.99531 * 20 19 18 39 39 H 1.08996 * 109.88151 * 238.15667 * 20 19 18 40 40 H 1.08998 * 110.62379 * 79.27294 * 22 21 20 41 41 H 1.09003 * 110.62260 * 202.12497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.4124 -2.6542 -0.0009 12 6 5.8069 -4.1325 -0.0015 13 7 5.3677 -4.7560 -1.2568 14 6 5.7181 -3.9164 -2.4137 15 6 5.2186 -4.5908 -3.6942 16 8 5.7915 -5.8973 -3.7974 17 6 5.4715 -6.7528 -2.6949 18 6 5.9278 -6.0975 -1.3990 19 6 7.4662 -6.0555 -1.3257 20 6 7.7808 -6.4334 0.1364 21 8 6.5236 -6.6044 0.8131 22 6 5.5492 -6.9746 -0.1878 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 5.8151 -2.1706 0.8890 27 1 5.8152 -2.1707 -0.8909 28 1 5.3309 -4.6358 0.8401 29 1 6.8897 -4.2195 0.0881 30 1 5.2479 -2.9385 -2.3098 31 1 6.8004 -3.7967 -2.4623 32 1 4.1321 -4.6716 -3.6626 33 1 5.5141 -3.9950 -4.5579 34 1 5.9797 -7.7093 -2.8173 35 1 4.3941 -6.9148 -2.6608 36 1 7.8321 -5.0532 -1.5486 37 1 7.9014 -6.7832 -2.0107 38 1 8.3469 -7.3645 0.1650 39 1 8.3518 -5.6353 0.6109 40 1 5.6374 -8.0320 -0.4370 41 1 4.5403 -6.7451 0.1551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339161848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:03 Heat of formation + Delta-G solvation = -112.096706 kcal Electronic energy + Delta-G solvation = -22474.502889 eV Core-core repulsion = 19162.482280 eV Total energy + Delta-G solvation = -3312.020609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15550 -38.10050 -37.16753 -35.21174 -32.72346 -32.30865 -30.19668 -29.95651 -27.93583 -26.48815 -25.88610 -23.04521 -22.56499 -21.85110 -21.42854 -19.05334 -17.28746 -16.94949 -16.61892 -16.19712 -15.86025 -15.48265 -15.20035 -15.00442 -14.69292 -14.43199 -14.31242 -13.83846 -13.46446 -12.86291 -12.73413 -12.44192 -12.24498 -11.96219 -11.86195 -11.74435 -11.42152 -11.29765 -11.21851 -10.90261 -10.74596 -10.51312 -10.38954 -9.85978 -9.76446 -9.58153 -9.16061 -8.82535 -8.44846 -8.18956 -6.10203 -4.08758 3.24120 3.31468 3.32727 3.64518 3.68342 3.84798 4.35985 4.38536 4.60432 4.64091 4.72255 4.81020 4.95345 4.98794 5.20962 5.21058 5.23925 5.35323 5.39755 5.48881 5.50905 5.53204 5.61666 5.65816 5.71294 5.75058 5.79574 5.87826 6.01017 6.05119 6.33255 6.60371 6.67370 6.99731 7.00403 7.08442 7.13621 7.61324 8.05085 8.69126 9.02918 9.49434 11.02942 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004778 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.829086 B = 5858.914047 C = 6247.272074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.364 6.364 11 C 0.052 3.948 12 C 0.062 3.938 13 N -0.502 5.502 14 C 0.013 3.987 15 C 0.062 3.938 16 O -0.385 6.385 17 C 0.081 3.919 18 C 0.045 3.955 19 C -0.180 4.180 20 C 0.047 3.953 21 O -0.372 6.372 22 C 0.060 3.940 23 H 0.266 0.734 24 H 0.000 1.000 25 H -0.005 1.005 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.715 -12.768 -4.570 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.283 6.283 11 C -0.025 4.025 12 C -0.065 4.065 13 N -0.227 5.227 14 C -0.114 4.114 15 C -0.015 4.015 16 O -0.303 6.303 17 C 0.004 3.996 18 C -0.046 4.046 19 C -0.219 4.219 20 C -0.030 4.030 21 O -0.291 6.291 22 C -0.017 4.017 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.974 -12.863 -4.478 20.993 hybrid contribution 1.418 1.462 -0.001 2.037 sum 17.393 -11.402 -4.479 21.274 Atomic orbital electron populations 1.69878 1.06036 1.27007 1.50516 1.24763 0.94774 0.98658 0.94744 0.86871 0.80358 0.83928 0.78695 1.19993 1.20789 1.19205 1.20884 0.88247 0.95295 1.50886 0.89888 1.20591 0.96258 0.79906 0.94043 1.88035 1.16631 1.28752 1.94866 1.22527 0.85901 0.95053 0.99066 1.22309 0.97620 0.94065 0.92504 1.62036 1.57889 1.00449 1.02277 1.22937 0.98765 0.98901 0.90825 1.22715 0.98665 0.83118 0.96967 1.87991 1.74783 1.24162 1.43365 1.22396 1.00721 0.92749 0.83748 1.22688 0.92071 0.92502 0.97380 1.23478 0.97648 1.03393 0.97381 1.23185 0.87389 1.00628 0.91800 1.88951 1.18471 1.90011 1.31633 1.23482 0.94654 0.96841 0.86742 0.92409 0.98199 0.98738 0.93990 0.94401 0.88694 0.93693 0.88114 0.94397 0.91538 0.88498 0.88584 0.91722 0.90306 0.89993 0.92446 0.90102 0.91546 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.39 9.99 -34.44 -0.34 -15.74 16 8 H 0.08 2.73 8.06 -52.48 -0.42 2.30 16 9 C 0.17 4.27 4.76 36.00 0.17 4.44 16 10 O -0.36 -8.49 10.27 -35.23 -0.36 -8.85 16 11 C 0.05 0.93 5.43 37.16 0.20 1.13 16 12 C 0.06 0.94 4.13 -3.83 -0.02 0.92 16 13 N -0.50 -7.30 4.64 -218.35 -1.01 -8.32 16 14 C 0.01 0.18 4.64 -3.62 -0.02 0.17 16 15 C 0.06 0.78 6.98 37.21 0.26 1.04 16 16 O -0.38 -4.85 10.72 -35.23 -0.38 -5.22 16 17 C 0.08 0.88 5.57 36.76 0.20 1.09 16 18 C 0.05 0.53 0.72 -131.24 -0.09 0.43 16 19 C -0.18 -1.82 5.25 -25.51 -0.13 -1.95 16 20 C 0.05 0.47 6.63 37.81 0.25 0.72 16 21 O -0.37 -4.68 9.69 -35.23 -0.34 -5.02 16 22 C 0.06 0.68 6.11 37.81 0.23 0.91 16 23 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 25 H -0.01 -0.12 7.57 -51.93 -0.39 -0.52 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.62 5.98 -51.93 -0.31 0.31 16 28 H 0.09 1.58 6.80 -51.93 -0.35 1.23 16 29 H 0.05 0.60 5.13 -51.93 -0.27 0.33 16 30 H 0.10 1.57 6.03 -51.93 -0.31 1.26 16 31 H 0.04 0.48 6.49 -51.93 -0.34 0.14 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.81 8.01 -51.92 -0.42 0.40 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.86 5.70 -51.93 -0.30 0.56 16 37 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 40 H 0.07 0.59 8.01 -51.93 -0.42 0.18 16 41 H 0.11 1.37 8.12 -51.93 -0.42 0.95 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -32.59 310.72 -7.09 -39.69 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.40 Total: -1.96 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 0.62 Total: -4.81 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.24 Total: -35.30 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.08 Total: -19.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.59 -7.09 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339161848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.411 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds