Wall clock time and date at job start Mon Mar 30 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00348 * 3 2 1 5 5 H 1.48499 * 109.47148 * 30.00502 * 3 2 1 6 6 H 1.48495 * 109.46877 * 150.00241 * 3 2 1 7 7 C 1.37876 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99760 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00011 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46959 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47125 * 64.99613 * 12 11 10 14 14 C 1.47172 * 111.00089 * 46.21957 * 13 12 11 15 15 C 1.53104 * 109.17562 * 181.07857 * 14 13 12 16 16 O 1.43030 * 109.39267 * 302.45245 * 15 14 13 17 17 C 1.43177 * 113.62199 * 59.31370 * 16 15 14 18 18 C 1.46064 * 110.99955 * 169.99739 * 13 12 11 19 19 C 1.54077 * 110.68378 * 303.13131 * 18 13 12 20 20 C 1.54256 * 104.00623 * 97.94649 * 19 18 13 21 21 O 1.43801 * 107.27028 * 357.58087 * 20 19 18 22 22 C 1.44511 * 107.09955 * 26.25296 * 21 20 19 23 23 H 0.97001 * 119.99703 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47158 * 60.00754 * 9 7 2 25 25 H 1.08996 * 109.47587 * 299.99973 * 9 7 2 26 26 H 1.08997 * 109.47081 * 60.00248 * 11 10 9 27 27 H 1.08994 * 109.47053 * 299.99961 * 11 10 9 28 28 H 1.09002 * 109.46778 * 305.00225 * 12 11 10 29 29 H 1.08999 * 109.46879 * 185.00015 * 12 11 10 30 30 H 1.09007 * 109.52363 * 300.98703 * 14 13 12 31 31 H 1.08999 * 109.52456 * 61.10489 * 14 13 12 32 32 H 1.09000 * 109.48584 * 62.43617 * 15 14 13 33 33 H 1.09005 * 109.48218 * 182.47880 * 15 14 13 34 34 H 1.09007 * 109.48875 * 182.77193 * 17 16 15 35 35 H 1.09001 * 109.49750 * 62.70041 * 17 16 15 36 36 H 1.09001 * 110.52092 * 339.31275 * 19 18 13 37 37 H 1.09004 * 110.51960 * 216.58161 * 19 18 13 38 38 H 1.09005 * 109.88132 * 116.99531 * 20 19 18 39 39 H 1.08996 * 109.88151 * 238.15667 * 20 19 18 40 40 H 1.08998 * 110.62379 * 79.27294 * 22 21 20 41 41 H 1.09003 * 110.62260 * 202.12497 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.4124 -2.6542 -0.0009 12 6 5.8069 -4.1325 -0.0015 13 7 5.3677 -4.7560 -1.2568 14 6 5.7181 -3.9164 -2.4137 15 6 5.2186 -4.5908 -3.6942 16 8 5.7915 -5.8973 -3.7974 17 6 5.4715 -6.7528 -2.6949 18 6 5.9278 -6.0975 -1.3990 19 6 7.4662 -6.0555 -1.3257 20 6 7.7808 -6.4334 0.1364 21 8 6.5236 -6.6044 0.8131 22 6 5.5492 -6.9746 -0.1878 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 5.8151 -2.1706 0.8890 27 1 5.8152 -2.1707 -0.8909 28 1 5.3309 -4.6358 0.8401 29 1 6.8897 -4.2195 0.0881 30 1 5.2479 -2.9385 -2.3098 31 1 6.8004 -3.7967 -2.4623 32 1 4.1321 -4.6716 -3.6626 33 1 5.5141 -3.9950 -4.5579 34 1 5.9797 -7.7093 -2.8173 35 1 4.3941 -6.9148 -2.6608 36 1 7.8321 -5.0532 -1.5486 37 1 7.9014 -6.7832 -2.0107 38 1 8.3469 -7.3645 0.1650 39 1 8.3518 -5.6353 0.6109 40 1 5.6374 -8.0320 -0.4370 41 1 4.5403 -6.7451 0.1551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339161848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:02 Heat of formation + Delta-G solvation = -138.169713 kcal Electronic energy + Delta-G solvation = -22475.633500 eV Core-core repulsion = 19162.482280 eV Total energy + Delta-G solvation = -3313.151220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10511 -39.05255 -38.75560 -36.43472 -34.83796 -33.38164 -31.43177 -30.91538 -29.79093 -27.70939 -26.88978 -23.99888 -23.95807 -23.44818 -22.66657 -20.04264 -19.04913 -18.27393 -17.68021 -17.50405 -17.12493 -16.66916 -16.41506 -16.28281 -16.04923 -15.76747 -15.27911 -15.00799 -14.78971 -14.61625 -14.24719 -13.70677 -13.55188 -13.10769 -12.98940 -12.79060 -12.69275 -12.62962 -12.50562 -12.35943 -12.08599 -11.86606 -11.68456 -11.47054 -11.30971 -10.92532 -10.71715 -10.51160 -10.32353 -9.23485 -8.37137 -6.44819 1.31940 1.35308 1.46069 2.28770 2.65250 2.76300 2.95306 2.98605 3.09014 3.52144 3.76069 3.82286 3.87891 4.06385 4.09770 4.18707 4.22252 4.26136 4.38030 4.44532 4.48903 4.55838 4.60209 4.63723 4.66891 4.77775 4.80437 4.82891 4.87198 4.91365 4.97560 5.06164 5.14167 5.43962 5.85356 5.89860 6.01471 6.05582 6.13748 6.59505 6.77234 7.19725 8.80229 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004778 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.829086 B = 5858.914047 C = 6247.272074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.542 4.542 8 H 0.028 0.972 9 C 0.180 3.820 10 O -0.391 6.391 11 C 0.045 3.955 12 C 0.074 3.926 13 N -0.528 5.528 14 C 0.017 3.983 15 C 0.065 3.935 16 O -0.388 6.388 17 C 0.079 3.921 18 C 0.042 3.958 19 C -0.170 4.170 20 C 0.044 3.956 21 O -0.395 6.395 22 C 0.060 3.940 23 H 0.273 0.727 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.695 -12.369 -5.189 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.580 4.580 8 H 0.046 0.954 9 C 0.104 3.896 10 O -0.310 6.310 11 C -0.032 4.032 12 C -0.053 4.053 13 N -0.253 5.253 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.307 6.307 17 C 0.002 3.998 18 C -0.049 4.049 19 C -0.210 4.210 20 C -0.032 4.032 21 O -0.315 6.315 22 C -0.017 4.017 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.972 -12.495 -5.100 23.282 hybrid contribution 0.438 1.193 0.201 1.286 sum 19.410 -11.302 -4.899 22.988 Atomic orbital electron populations 1.70039 1.08274 1.28734 1.51181 1.25831 0.95769 1.03335 0.93482 0.85613 0.79370 0.77554 0.79818 1.18237 1.19841 1.17084 1.21135 0.90956 0.93729 1.52169 0.95374 1.20288 0.93301 0.81313 0.94720 1.87993 1.20364 1.27540 1.95090 1.22849 0.82803 0.97242 1.00312 1.22132 0.98560 0.92158 0.92433 1.61968 1.59274 1.01898 1.02152 1.22863 0.99410 0.97828 0.90973 1.22692 0.97536 0.83660 0.97288 1.87984 1.74637 1.24030 1.44017 1.22577 1.00713 0.93580 0.82957 1.22768 0.93367 0.90911 0.97830 1.23415 0.95972 1.03656 0.97925 1.23338 0.86531 1.01931 0.91427 1.88929 1.19624 1.90314 1.32610 1.23501 0.93502 0.98318 0.86335 0.91822 0.97461 0.97295 0.92881 0.92761 0.90728 0.91356 0.90402 0.92841 0.93498 0.86510 0.85484 0.92669 0.90837 0.88154 0.90379 0.89689 0.88745 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.96 43.66 27.47 68.60 1.88 45.54 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.54 -33.56 9.99 25.60 0.26 -33.31 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C 0.18 9.14 4.76 71.23 0.34 9.48 16 10 O -0.39 -18.52 10.27 -148.98 -1.53 -20.05 16 11 C 0.04 1.55 5.43 71.98 0.39 1.94 16 12 C 0.07 2.21 4.13 86.30 0.36 2.56 16 13 N -0.53 -15.13 4.64 -844.72 -3.92 -19.06 16 14 C 0.02 0.44 4.64 86.29 0.40 0.85 16 15 C 0.07 1.59 6.98 72.02 0.50 2.09 16 16 O -0.39 -9.06 10.72 -148.98 -1.60 -10.66 16 17 C 0.08 1.57 5.57 71.72 0.40 1.97 16 18 C 0.04 0.92 0.72 4.22 0.00 0.92 16 19 C -0.17 -2.95 5.25 31.38 0.16 -2.79 16 20 C 0.04 0.76 6.63 72.41 0.48 1.24 16 21 O -0.40 -9.43 9.69 -148.98 -1.44 -10.87 16 22 C 0.06 1.30 6.11 72.41 0.44 1.75 16 23 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.01 0.38 7.20 -2.38 -0.02 0.36 16 25 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.71 5.98 -2.39 -0.01 1.69 16 28 H 0.07 2.53 6.80 -2.39 -0.02 2.51 16 29 H 0.07 1.70 5.13 -2.39 -0.01 1.69 16 30 H 0.08 2.41 6.03 -2.38 -0.01 2.40 16 31 H 0.05 1.24 6.49 -2.39 -0.02 1.22 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.13 1.74 8.01 -2.38 -0.02 1.72 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.37 5.70 -2.39 -0.01 1.36 16 37 H 0.10 1.40 7.74 -2.38 -0.02 1.38 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.38 7.70 -2.39 -0.02 1.36 16 40 H 0.09 1.48 8.01 -2.39 -0.02 1.46 16 41 H 0.09 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -72.78 310.72 -1.15 -73.94 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.96 Total: 12.83 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.20 Total: -12.01 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.62 Total: -78.73 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -4.57 Total: -41.58 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -72.78 -1.15 -73.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339161848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.231 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds