Wall clock time and date at job start Mon Mar 30 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 120.00292 * 2 1 4 4 H 1.48500 * 109.47434 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46971 * 299.99628 * 3 2 1 6 6 H 1.48500 * 109.47404 * 59.99598 * 3 2 1 7 7 C 1.38802 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99778 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00194 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46870 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46525 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.46558 * 180.02562 * 12 11 10 14 14 C 1.41145 * 111.00164 * 66.05061 * 13 12 11 15 15 C 1.53031 * 113.40899 * 187.73158 * 14 13 12 16 16 O 1.40684 * 109.60598 * 277.16479 * 15 14 13 17 17 C 1.44095 * 114.86857 * 94.23117 * 16 15 14 18 18 C 1.54008 * 111.64428 * 319.46552 * 17 16 15 19 19 C 1.53494 * 116.00891 * 172.98835 * 18 17 16 20 20 C 1.52906 * 60.09383 * 253.56022 * 19 18 17 21 21 C 1.47992 * 110.99705 * 192.15485 * 13 12 11 22 22 H 0.97006 * 119.99521 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46796 * 59.99777 * 10 9 7 24 24 H 1.08995 * 109.47032 * 299.99803 * 10 9 7 25 25 H 1.09000 * 109.47289 * 60.00452 * 11 10 9 26 26 H 1.08995 * 109.47437 * 299.99928 * 11 10 9 27 27 H 1.09000 * 109.46998 * 60.00238 * 12 11 10 28 28 H 1.08995 * 109.47175 * 300.00053 * 12 11 10 29 29 H 1.08997 * 108.69198 * 308.74067 * 14 13 12 30 30 H 1.08996 * 108.69588 * 66.83969 * 14 13 12 31 31 H 1.08999 * 109.44872 * 37.20498 * 15 14 13 32 32 H 1.09003 * 109.44716 * 157.15144 * 15 14 13 33 33 H 1.09001 * 109.04930 * 80.02215 * 17 16 15 34 34 H 1.09004 * 109.04446 * 198.90922 * 17 16 15 35 35 H 1.09003 * 117.49508 * 1.08072 * 19 18 17 36 36 H 1.09009 * 117.49027 * 146.04362 * 19 18 17 37 37 H 1.08994 * 117.48469 * 252.46921 * 20 19 18 38 38 H 1.09008 * 117.48259 * 107.53026 * 20 19 18 39 39 H 1.09001 * 109.40297 * 281.45709 * 21 13 12 40 40 H 1.09003 * 109.39930 * 41.20142 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9790 -5.3243 0.0012 12 6 3.1511 -6.3078 0.0018 13 7 2.6358 -7.6835 0.0018 14 6 1.9580 -7.9698 -1.2027 15 6 1.2380 -9.3201 -1.1890 16 8 2.1503 -10.3447 -1.5008 17 6 2.7525 -10.9876 -0.3605 18 6 3.1154 -9.9716 0.7385 19 6 3.6094 -10.5635 2.0658 20 6 2.2073 -9.9601 1.9750 21 6 3.7146 -8.6538 0.2933 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7314 0.8905 24 1 3.1243 -3.7315 -0.8894 25 1 1.3702 -5.4847 -0.8886 26 1 1.3707 -5.4841 0.8913 27 1 3.7596 -6.1473 0.8918 28 1 3.7598 -6.1482 -0.8881 29 1 1.2245 -7.1846 -1.3858 30 1 2.6805 -7.9693 -2.0188 31 1 0.8178 -9.4973 -0.1990 32 1 0.4363 -9.3113 -1.9274 33 1 2.0529 -11.7175 0.0469 34 1 3.6575 -11.5042 -0.6803 35 1 3.6867 -11.6486 2.1350 36 1 4.3639 -10.0024 2.6171 37 1 2.0392 -9.0021 2.4667 38 1 1.3620 -10.6482 1.9847 39 1 4.3115 -8.8124 -0.6048 40 1 4.3517 -8.2598 1.0851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360088253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:41 Heat of formation + Delta-G solvation = -24.137574 kcal Electronic energy + Delta-G solvation = -18745.707345 eV Core-core repulsion = 15880.253801 eV Total energy + Delta-G solvation = -2865.453544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26169 -37.09057 -36.70131 -32.83361 -32.40395 -29.96606 -27.38315 -26.83145 -25.59102 -24.22219 -22.78183 -21.87327 -20.33114 -19.31571 -17.48892 -17.00737 -16.52276 -15.76509 -15.06568 -14.96379 -14.79620 -14.73231 -14.52371 -13.92835 -13.67168 -13.50380 -12.91316 -12.16806 -12.01452 -11.94511 -11.85615 -11.57438 -11.49135 -11.20562 -11.12302 -11.07028 -10.74471 -10.62152 -10.42434 -10.21066 -10.09107 -9.64525 -9.47715 -9.05771 -8.29263 -8.25032 -6.51492 -6.22114 -3.92008 3.21097 3.21367 3.28845 3.31659 3.56183 3.68779 4.10709 4.23612 4.32193 4.54041 4.66187 4.78172 4.97109 5.12306 5.14320 5.22801 5.27913 5.30323 5.37965 5.40751 5.44727 5.53098 5.57633 5.69186 5.72264 5.75351 5.77225 5.85937 5.91910 5.99524 6.01306 6.10853 6.36651 6.60374 6.75621 7.00255 7.14455 7.32883 7.61670 8.37731 9.24366 10.86139 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.003161 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.887696 B = 8854.955538 C = 9081.720433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.113 4.113 11 C -0.094 4.094 12 C 0.066 3.934 13 N -0.541 5.541 14 C 0.032 3.968 15 C 0.065 3.935 16 O -0.384 6.384 17 C 0.098 3.902 18 C -0.162 4.162 19 C -0.167 4.167 20 C -0.152 4.152 21 C 0.099 3.901 22 H 0.266 0.734 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -21.560 1.380 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.133 4.133 12 C -0.063 4.063 13 N -0.265 5.265 14 C -0.098 4.098 15 C -0.013 4.013 16 O -0.302 6.302 17 C 0.022 3.978 18 C -0.163 4.163 19 C -0.204 4.204 20 C -0.189 4.189 21 C -0.028 4.028 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.404 -21.717 1.534 22.212 hybrid contribution 2.409 1.489 -0.361 2.855 sum 6.813 -20.228 1.173 21.377 Atomic orbital electron populations 1.70038 1.05911 1.27182 1.47395 1.25018 0.95084 0.99091 0.94649 0.86114 0.79648 0.81886 0.77876 1.19625 1.20586 1.20565 1.22737 0.94541 0.90814 1.58283 0.90952 1.84626 1.09571 0.99405 1.96835 1.23229 1.02849 0.97400 1.02702 1.21312 0.96966 0.91895 1.03103 1.22162 0.97110 0.86322 1.00695 1.59835 1.28013 1.02536 1.36073 1.21634 0.98925 0.98650 0.90591 1.22289 0.91197 0.86053 1.01724 1.87677 1.59815 1.51448 1.31301 1.22561 0.97405 0.92341 0.85516 1.22177 1.06258 0.97578 0.90278 1.23095 0.98630 1.00432 0.98257 1.23051 0.93035 1.02886 0.99938 1.21341 0.91831 0.89495 1.00121 0.92380 0.92165 0.92364 0.91616 0.90763 0.90850 0.94909 0.89378 0.95314 0.91592 0.89339 0.92900 0.89521 0.88779 0.88508 0.87766 0.89132 0.93953 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.90 9.50 30.94 0.29 -14.61 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.13 -3.50 21.44 -107.50 -2.30 -5.80 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.09 -1.54 5.12 -26.73 -0.14 -1.68 16 12 C 0.07 0.89 4.96 -3.82 -0.02 0.87 16 13 N -0.54 -6.68 4.29 -239.24 -1.03 -7.71 16 14 C 0.03 0.39 4.86 -6.81 -0.03 0.35 16 15 C 0.06 0.71 6.31 37.17 0.23 0.95 16 16 O -0.38 -4.48 10.42 -34.37 -0.36 -4.84 16 17 C 0.10 0.91 6.48 37.68 0.24 1.15 16 18 C -0.16 -1.51 1.44 -154.29 -0.22 -1.73 16 19 C -0.17 -1.27 9.83 -26.52 -0.26 -1.53 16 20 C -0.15 -1.35 8.85 -26.56 -0.24 -1.59 16 21 C 0.10 1.07 4.95 -4.01 -0.02 1.05 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 24 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 25 H 0.07 1.09 6.36 -51.93 -0.33 0.76 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 0.96 7.80 -51.93 -0.40 0.55 16 28 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.09 1.13 5.93 -51.93 -0.31 0.82 16 30 H 0.03 0.38 8.02 -51.93 -0.42 -0.04 16 31 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.43 7.86 -51.93 -0.41 0.03 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.71 8.03 -51.92 -0.42 0.29 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 0.74 8.03 -51.92 -0.42 0.32 16 39 H 0.04 0.49 7.96 -51.93 -0.41 0.07 16 40 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -31.01 328.92 -9.83 -40.84 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.77 Total: -1.77 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.04 Total: -16.91 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: -0.29 Total: -33.10 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.36 Total: -4.84 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.01 -9.83 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360088253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.698 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds