Wall clock time and date at job start Mon Mar 30 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46880 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47318 * 299.99832 * 3 2 1 6 6 H 1.48506 * 109.47440 * 60.00107 * 3 2 1 7 7 C 1.37875 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00044 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00359 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47274 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47458 * 74.94028 * 12 11 10 14 14 C 1.47801 * 110.99918 * 293.13526 * 13 12 11 15 15 C 1.45861 * 112.91605 * 153.86411 * 14 13 12 16 16 C 1.54505 * 111.59065 * 61.32593 * 15 14 13 17 17 C 1.50464 * 108.85361 * 282.80713 * 16 15 14 18 18 C 1.54289 * 113.03641 * 92.15632 * 17 16 15 19 19 C 1.44270 * 110.99848 * 171.14834 * 13 12 11 20 20 H 1.09000 * 108.97730 * 98.67072 * 19 13 12 21 21 C 1.50696 * 108.98199 * 339.95679 * 19 13 12 22 22 O 1.20830 * 119.99810 * 301.49815 * 21 19 13 23 23 O 1.34224 * 119.99727 * 121.49977 * 21 19 13 24 24 H 0.96994 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.48018 * 300.00343 * 9 7 2 26 26 H 1.08999 * 109.46831 * 60.00840 * 9 7 2 27 27 H 1.09001 * 109.47188 * 300.01370 * 11 10 9 28 28 H 1.09008 * 109.46666 * 60.00303 * 11 10 9 29 29 H 1.08997 * 109.47167 * 194.94175 * 12 11 10 30 30 H 1.09008 * 109.47091 * 314.94340 * 12 11 10 31 31 H 1.08994 * 108.79112 * 274.75147 * 14 13 12 32 32 H 1.08999 * 108.79379 * 32.97617 * 14 13 12 33 33 H 1.09001 * 109.05531 * 181.86765 * 15 14 13 34 34 H 1.08998 * 109.05737 * 300.84853 * 15 14 13 35 35 H 1.09000 * 109.57532 * 42.61871 * 16 15 14 36 36 H 1.09005 * 109.57450 * 162.99483 * 16 15 14 37 37 H 1.08998 * 108.76833 * 213.07382 * 17 16 15 38 38 H 1.08998 * 108.76710 * 331.23269 * 17 16 15 39 39 H 1.08993 * 108.92282 * 79.02289 * 18 17 16 40 40 H 1.08997 * 108.91584 * 197.67604 * 18 17 16 41 41 H 0.96709 * 116.99796 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1798 -3.5853 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6482 -5.9561 0.0023 13 7 3.2491 -6.0469 1.3397 14 6 4.0027 -4.8181 1.6663 15 6 4.0962 -4.5737 3.1013 16 6 4.8383 -5.7188 3.8259 17 6 3.9040 -6.8894 3.9697 18 6 4.0084 -7.8922 2.8018 19 6 4.1259 -7.1886 1.4362 20 1 5.1550 -6.8581 1.2951 21 6 3.7748 -8.1696 0.3475 22 8 2.6584 -8.6274 0.2838 23 8 4.7023 -8.5349 -0.5514 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5564 0.8918 26 1 0.6243 -2.5575 -0.8881 27 1 0.9453 -4.9823 0.8921 28 1 0.9448 -4.9826 -0.8879 29 1 2.2040 -6.9157 -0.2623 30 1 3.4182 -5.6992 -0.7253 31 1 5.0097 -4.9050 1.2585 32 1 3.5083 -3.9677 1.1967 33 1 4.6326 -3.6397 3.2690 34 1 3.0910 -4.4854 3.5135 35 1 5.7094 -6.0164 3.2421 36 1 5.1557 -5.3815 4.8126 37 1 4.1336 -7.4092 4.8998 38 1 2.8809 -6.5171 4.0221 39 1 4.8864 -8.5201 2.9524 40 1 3.1196 -8.5232 2.7973 41 1 4.4302 -9.1670 -1.2308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385288123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:16 Heat of formation + Delta-G solvation = -129.291855 kcal Electronic energy + Delta-G solvation = -22163.473328 eV Core-core repulsion = 18850.707081 eV Total energy + Delta-G solvation = -3312.766247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11111 -38.71518 -36.75600 -36.30682 -34.35024 -32.74814 -32.47264 -29.71458 -27.17588 -26.01036 -25.55487 -22.45557 -22.35267 -21.78135 -20.26534 -19.50593 -18.29838 -17.17318 -16.54920 -16.14919 -15.59498 -15.39012 -15.06435 -14.79135 -14.33391 -14.22168 -13.85221 -13.49479 -13.25341 -12.99150 -12.62343 -12.42792 -12.13499 -11.80515 -11.72126 -11.36102 -11.18971 -10.94331 -10.79547 -10.74934 -10.62697 -10.51689 -10.38199 -10.23709 -10.16190 -9.79921 -9.09119 -8.78492 -8.27267 -8.15153 -6.12340 -4.14419 1.95637 2.79115 3.27653 3.34436 3.39944 3.87763 4.32435 4.71937 4.84142 4.85681 4.94866 5.11625 5.15120 5.24360 5.29988 5.37478 5.44903 5.58004 5.66581 5.75374 5.79638 5.99330 6.03832 6.08628 6.16290 6.26579 6.30089 6.32354 6.37835 6.41142 6.63398 6.81215 7.10511 7.16526 7.26772 7.44062 7.72744 7.77111 8.13804 8.53556 8.98700 9.50627 10.99118 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.004710 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.350017 B = 5943.802116 C = 6597.248940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.395 6.395 11 C 0.070 3.930 12 C 0.026 3.974 13 N -0.503 5.503 14 C 0.027 3.973 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.098 4.098 19 C 0.097 3.903 20 H 0.075 0.925 21 C 0.477 3.523 22 O -0.503 6.503 23 O -0.517 6.517 24 H 0.263 0.737 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -15.980 4.267 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.315 6.315 11 C -0.008 4.008 12 C -0.101 4.101 13 N -0.230 5.230 14 C -0.098 4.098 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.013 4.013 20 H 0.093 0.907 21 C 0.319 3.681 22 O -0.390 6.390 23 O -0.328 6.328 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.132 -15.737 4.882 18.839 hybrid contribution 0.476 0.467 -1.138 1.319 sum 9.608 -15.270 3.744 18.426 Atomic orbital electron populations 1.69973 1.06101 1.27051 1.50493 1.24942 0.94942 0.99400 0.95148 0.86315 0.79995 0.82739 0.77639 1.19514 1.20885 1.20827 1.21072 0.93952 0.89360 1.50857 0.91594 1.20214 0.88767 0.83442 0.95533 1.87673 1.35700 1.13442 1.94701 1.22177 0.94111 0.84572 0.99932 1.22933 0.97855 1.00614 0.88682 1.61902 1.31569 1.01539 1.27968 1.21690 0.96471 0.94031 0.97639 1.20593 1.01315 0.97643 0.95448 1.21438 0.98202 0.95889 1.00301 1.21158 1.01463 0.95679 0.95974 1.21920 1.02257 0.97806 0.91667 1.21433 0.97985 0.90164 0.91697 0.90703 1.23868 0.82547 0.80269 0.81446 1.90686 1.22433 1.52930 1.72917 1.84612 1.45423 1.61365 1.41426 0.92698 0.97505 0.97742 0.92997 0.93870 0.88028 0.93915 0.95173 0.85057 0.91381 0.91000 0.92496 0.92092 0.92603 0.90823 0.91785 0.90890 0.73335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.77 9.43 -34.44 -0.32 -15.10 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.19 5.23 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.12 7.33 -35.23 -0.26 -9.38 16 11 C 0.07 1.34 6.05 37.15 0.22 1.56 16 12 C 0.03 0.43 4.49 -3.83 -0.02 0.41 16 13 N -0.50 -7.64 4.21 -232.85 -0.98 -8.62 16 14 C 0.03 0.43 4.78 -6.71 -0.03 0.39 16 15 C -0.11 -1.55 5.53 -29.32 -0.16 -1.71 16 16 C -0.12 -1.34 5.60 -27.21 -0.15 -1.49 16 17 C -0.11 -1.14 5.42 -27.32 -0.15 -1.29 16 18 C -0.10 -1.08 5.52 -25.50 -0.14 -1.22 16 19 C 0.10 1.24 2.23 -69.71 -0.16 1.08 16 20 H 0.08 0.90 6.50 -51.93 -0.34 0.57 16 21 C 0.48 6.05 5.38 36.00 0.19 6.24 16 22 O -0.50 -7.57 15.30 -18.75 -0.29 -7.86 16 23 O -0.52 -5.13 13.41 -39.24 -0.53 -5.66 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.10 1.64 4.76 -51.93 -0.25 1.39 16 30 H 0.04 0.71 8.12 -51.92 -0.42 0.29 16 31 H 0.03 0.45 7.24 -51.93 -0.38 0.07 16 32 H 0.13 2.57 4.42 -51.93 -0.23 2.34 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.08 7.58 -51.93 -0.39 0.69 16 35 H 0.06 0.60 7.15 -51.93 -0.37 0.23 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 41 H 0.41 2.24 9.10 45.56 0.41 2.66 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -31.73 321.19 -7.78 -39.50 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.67 Total: 0.72 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.61 Total: -4.15 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.24 Total: -34.54 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -1.07 Total: -22.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.73 -7.78 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.791 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds