Wall clock time and date at job start Mon Mar 30 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46880 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47318 * 299.99832 * 3 2 1 6 6 H 1.48506 * 109.47440 * 60.00107 * 3 2 1 7 7 C 1.37875 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00044 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00359 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47274 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47458 * 74.94028 * 12 11 10 14 14 C 1.47801 * 110.99918 * 293.13526 * 13 12 11 15 15 C 1.45861 * 112.91605 * 153.86411 * 14 13 12 16 16 C 1.54505 * 111.59065 * 61.32593 * 15 14 13 17 17 C 1.50464 * 108.85361 * 282.80713 * 16 15 14 18 18 C 1.54289 * 113.03641 * 92.15632 * 17 16 15 19 19 C 1.44270 * 110.99848 * 171.14834 * 13 12 11 20 20 H 1.09000 * 108.97730 * 98.67072 * 19 13 12 21 21 C 1.50696 * 108.98199 * 339.95679 * 19 13 12 22 22 O 1.20830 * 119.99810 * 301.49815 * 21 19 13 23 23 O 1.34224 * 119.99727 * 121.49977 * 21 19 13 24 24 H 0.96994 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.48018 * 300.00343 * 9 7 2 26 26 H 1.08999 * 109.46831 * 60.00840 * 9 7 2 27 27 H 1.09001 * 109.47188 * 300.01370 * 11 10 9 28 28 H 1.09008 * 109.46666 * 60.00303 * 11 10 9 29 29 H 1.08997 * 109.47167 * 194.94175 * 12 11 10 30 30 H 1.09008 * 109.47091 * 314.94340 * 12 11 10 31 31 H 1.08994 * 108.79112 * 274.75147 * 14 13 12 32 32 H 1.08999 * 108.79379 * 32.97617 * 14 13 12 33 33 H 1.09001 * 109.05531 * 181.86765 * 15 14 13 34 34 H 1.08998 * 109.05737 * 300.84853 * 15 14 13 35 35 H 1.09000 * 109.57532 * 42.61871 * 16 15 14 36 36 H 1.09005 * 109.57450 * 162.99483 * 16 15 14 37 37 H 1.08998 * 108.76833 * 213.07382 * 17 16 15 38 38 H 1.08998 * 108.76710 * 331.23269 * 17 16 15 39 39 H 1.08993 * 108.92282 * 79.02289 * 18 17 16 40 40 H 1.08997 * 108.91584 * 197.67604 * 18 17 16 41 41 H 0.96709 * 116.99796 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1798 -3.5853 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6482 -5.9561 0.0023 13 7 3.2491 -6.0469 1.3397 14 6 4.0027 -4.8181 1.6663 15 6 4.0962 -4.5737 3.1013 16 6 4.8383 -5.7188 3.8259 17 6 3.9040 -6.8894 3.9697 18 6 4.0084 -7.8922 2.8018 19 6 4.1259 -7.1886 1.4362 20 1 5.1550 -6.8581 1.2951 21 6 3.7748 -8.1696 0.3475 22 8 2.6584 -8.6274 0.2838 23 8 4.7023 -8.5349 -0.5514 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5564 0.8918 26 1 0.6243 -2.5575 -0.8881 27 1 0.9453 -4.9823 0.8921 28 1 0.9448 -4.9826 -0.8879 29 1 2.2040 -6.9157 -0.2623 30 1 3.4182 -5.6992 -0.7253 31 1 5.0097 -4.9050 1.2585 32 1 3.5083 -3.9677 1.1967 33 1 4.6326 -3.6397 3.2690 34 1 3.0910 -4.4854 3.5135 35 1 5.7094 -6.0164 3.2421 36 1 5.1557 -5.3815 4.8126 37 1 4.1336 -7.4092 4.8998 38 1 2.8809 -6.5171 4.0221 39 1 4.8864 -8.5201 2.9524 40 1 3.1196 -8.5232 2.7973 41 1 4.4302 -9.1670 -1.2308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385288123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:15 Heat of formation + Delta-G solvation = -151.464370 kcal Electronic energy + Delta-G solvation = -22164.434800 eV Core-core repulsion = 18850.707081 eV Total energy + Delta-G solvation = -3313.727719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15130 -39.85188 -38.46012 -37.23984 -35.60654 -34.79395 -33.57194 -31.18316 -29.14499 -27.15585 -26.71792 -24.52165 -23.47713 -23.12114 -21.37901 -20.48899 -19.26123 -18.65668 -18.28283 -17.58027 -17.12399 -16.75253 -16.51949 -16.08660 -15.87150 -15.31538 -15.22092 -14.83648 -14.61924 -14.17975 -13.91237 -13.76377 -13.32403 -13.20824 -13.15043 -12.87363 -12.79235 -12.65130 -12.33422 -12.20184 -12.00312 -11.63226 -11.49569 -11.46597 -11.38086 -11.22088 -11.07113 -10.78728 -10.13457 -9.46609 -8.31436 -6.43732 0.95907 1.40673 1.41811 1.56252 1.90705 2.34344 2.71184 3.02924 3.08191 3.83997 3.86160 3.89108 4.05351 4.18347 4.19949 4.25677 4.37138 4.41397 4.46857 4.58278 4.62036 4.71485 4.77322 4.86607 4.92340 5.06597 5.17033 5.18714 5.30331 5.36058 5.42468 5.49432 5.54183 5.57440 5.60192 5.91487 5.96272 6.06577 6.50120 6.80374 6.88413 7.28039 8.81241 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.004710 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.350017 B = 5943.802116 C = 6597.248940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.065 3.935 12 C 0.039 3.961 13 N -0.511 5.511 14 C 0.034 3.966 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.104 4.104 18 C -0.095 4.095 19 C 0.091 3.909 20 H 0.089 0.911 21 C 0.483 3.517 22 O -0.531 6.531 23 O -0.509 6.509 24 H 0.270 0.730 25 H -0.016 1.016 26 H -0.017 1.017 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 -16.486 4.744 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.134 3.866 10 O -0.314 6.314 11 C -0.012 4.012 12 C -0.088 4.088 13 N -0.238 5.238 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.019 4.019 20 H 0.106 0.894 21 C 0.326 3.674 22 O -0.421 6.421 23 O -0.322 6.322 24 H 0.079 0.921 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 11.385 -16.280 5.344 20.572 hybrid contribution -0.222 0.520 -1.319 1.436 sum 11.162 -15.760 4.025 19.727 Atomic orbital electron populations 1.70087 1.07849 1.28526 1.50676 1.25954 0.95884 1.03386 0.93996 0.85149 0.78784 0.77412 0.78143 1.18576 1.19902 1.19778 1.21372 0.94070 0.90529 1.51924 0.91740 1.19822 0.88693 0.84753 0.93325 1.87725 1.34920 1.14092 1.94685 1.22384 0.95414 0.83702 0.99749 1.22778 0.96966 0.99431 0.89639 1.61857 1.32615 1.02369 1.26971 1.21533 0.96343 0.92826 0.98515 1.20570 1.00747 0.99194 0.94544 1.21375 0.98061 0.94542 1.00876 1.21143 1.00091 0.95790 0.97091 1.21944 1.03091 0.97726 0.90530 1.21562 0.97890 0.89396 0.93005 0.89369 1.23773 0.82262 0.79826 0.81554 1.90683 1.23639 1.54046 1.73733 1.84557 1.44447 1.61754 1.41453 0.92130 0.99812 0.99927 0.93771 0.93468 0.87192 0.94020 0.94055 0.89144 0.91383 0.93056 0.91242 0.90443 0.90244 0.93156 0.88924 0.92002 0.70923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 2 C 0.01 0.35 5.46 84.65 0.46 0.82 16 3 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.85 9.43 25.60 0.24 -31.61 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.77 5.69 71.23 0.41 12.18 16 10 O -0.39 -18.98 7.33 -148.98 -1.09 -20.07 16 11 C 0.06 2.58 6.05 71.98 0.44 3.01 16 12 C 0.04 1.28 4.49 86.30 0.39 1.67 16 13 N -0.51 -15.36 4.21 -890.60 -3.75 -19.11 16 14 C 0.03 1.06 4.78 83.94 0.40 1.46 16 15 C -0.11 -3.09 5.53 28.92 0.16 -2.93 16 16 C -0.11 -2.20 5.60 30.29 0.17 -2.03 16 17 C -0.10 -2.03 5.42 30.21 0.16 -1.87 16 18 C -0.09 -1.86 5.52 31.39 0.17 -1.69 16 19 C 0.09 2.15 2.23 45.02 0.10 2.25 16 20 H 0.09 1.87 6.50 -2.39 -0.02 1.85 16 21 C 0.48 11.35 5.38 71.23 0.38 11.73 16 22 O -0.53 -15.40 15.30 21.95 0.34 -15.07 16 23 O -0.51 -8.75 13.41 -51.36 -0.69 -9.44 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.11 3.50 4.76 -2.39 -0.01 3.49 16 30 H 0.04 1.37 8.12 -2.38 -0.02 1.35 16 31 H 0.04 1.18 7.24 -2.39 -0.02 1.16 16 32 H 0.09 3.65 4.42 -2.39 -0.01 3.64 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 35 H 0.07 1.23 7.15 -2.39 -0.02 1.21 16 36 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.23 7.38 -2.39 -0.02 1.21 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.37 7.70 -2.39 -0.02 1.35 16 41 H 0.43 3.56 9.10 -74.05 -0.67 2.89 16 Total: -1.00 -69.32 321.19 0.95 -68.37 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.35 Total: 12.19 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.48 Total: -7.02 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -3.47 Total: -75.09 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.45 Total: -44.58 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.32 0.95 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385288123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.091 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds