Wall clock time and date at job start Mon Mar 30 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.50703 * 110.28364 * 299.31954 * 3 2 1 5 5 O 1.20817 * 120.00287 * 240.67034 * 4 3 2 6 6 O 1.34229 * 119.99635 * 60.67681 * 4 3 2 7 7 C 1.54259 * 110.32511 * 61.44868 * 3 2 1 8 8 C 1.54378 * 105.05930 * 118.99957 * 7 3 2 9 9 N 1.48567 * 104.59365 * 336.14765 * 8 7 3 10 10 C 1.46900 * 110.99719 * 159.03942 * 9 8 7 11 11 C 1.52999 * 109.47234 * 69.87540 * 10 9 8 12 12 O 1.42898 * 109.47177 * 64.99900 * 11 10 9 13 13 C 1.42906 * 113.99821 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46699 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.71972 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 C 1.48559 * 104.22364 * 39.48581 * 9 8 7 23 23 H 1.08992 * 109.47659 * 300.00089 * 1 2 3 24 24 H 1.08996 * 109.47025 * 60.00823 * 1 2 3 25 25 H 1.09008 * 109.46794 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47624 * 239.99368 * 2 1 3 27 27 H 1.09005 * 109.47412 * 119.99646 * 2 1 3 28 28 H 0.96700 * 116.99868 * 179.97438 * 6 4 3 29 29 H 1.08993 * 110.32287 * 0.10744 * 7 3 2 30 30 H 1.08990 * 110.40924 * 237.93910 * 7 3 2 31 31 H 1.09005 * 110.41367 * 217.37115 * 8 7 3 32 32 H 1.08997 * 110.41162 * 94.92227 * 8 7 3 33 33 H 1.09004 * 109.47620 * 309.87290 * 10 9 8 34 34 H 1.09000 * 109.47446 * 189.87116 * 10 9 8 35 35 H 1.09002 * 109.47235 * 304.99497 * 11 10 9 36 36 H 1.09000 * 109.47628 * 184.99900 * 11 10 9 37 37 H 1.09000 * 109.47490 * 59.99859 * 13 12 11 38 38 H 1.09001 * 109.47232 * 299.99213 * 13 12 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.41547 * 79.29045 * 22 9 8 41 41 H 1.09000 * 110.41149 * 201.73961 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5615 2.1658 -1.2325 5 8 2.3617 2.6149 -2.0183 6 8 0.2461 2.3112 -1.4571 7 6 1.5667 2.1782 1.2706 8 6 2.8625 2.5867 2.0037 9 7 3.8863 1.6261 1.5177 10 6 5.2418 2.1566 1.7154 11 6 5.5670 2.1809 3.2102 12 8 5.6080 0.8430 3.7105 13 6 5.9052 0.7529 5.1054 14 6 5.9221 -0.6950 5.5229 15 1 5.7211 -1.4688 4.7968 16 6 6.1890 -1.0315 6.8331 17 7 6.2032 -2.2951 7.1975 18 14 6.5289 0.3071 8.0908 19 1 5.2524 0.7309 8.7201 20 1 7.4459 -0.2161 9.1350 21 1 7.1588 1.4709 7.4168 22 6 3.5819 1.4685 0.0721 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 -0.0125 2.7827 -2.2608 29 1 0.9727 1.5111 1.8952 30 1 0.9875 3.0623 1.0045 31 1 2.7349 2.4929 3.0822 32 1 3.1428 3.6065 1.7403 33 1 5.2979 3.1689 1.3149 34 1 5.9600 1.5208 1.1976 35 1 4.7985 2.7436 3.7402 36 1 6.5359 2.6560 3.3637 37 1 5.1434 1.2859 5.6744 38 1 6.8811 1.1985 5.2985 39 1 6.3906 -2.5319 8.1194 40 1 3.9747 2.3134 -0.4934 41 1 3.9958 0.5328 -0.3037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:14 Heat of formation + Delta-G solvation = -134.759161 kcal Electronic energy + Delta-G solvation = -21523.468310 eV Core-core repulsion = 18210.464983 eV Total energy + Delta-G solvation = -3313.003327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13423 -38.82363 -36.82176 -36.42064 -34.62317 -32.59565 -31.05574 -29.22271 -28.43175 -27.05070 -23.91102 -23.22807 -22.55135 -21.78964 -20.65617 -19.76459 -18.14361 -16.96622 -16.61916 -16.36250 -15.66378 -15.60612 -14.97805 -14.65202 -14.32603 -14.24706 -13.92070 -13.56898 -13.41453 -12.90734 -12.72861 -12.46167 -12.08424 -11.95166 -11.93591 -11.72134 -11.54836 -11.20269 -11.12443 -10.94421 -10.85356 -10.81315 -10.66528 -10.41778 -10.34601 -9.82486 -9.12277 -8.78903 -8.41885 -8.32240 -6.07321 -4.05483 1.95263 2.71284 3.26788 3.33713 3.35242 4.05387 4.19023 4.38659 4.39193 4.58454 4.69824 4.99740 5.11249 5.14700 5.21914 5.24054 5.33678 5.40234 5.50552 5.57925 5.64972 5.66709 5.80075 5.83515 5.87355 5.92801 5.93899 6.01004 6.12230 6.18627 6.22174 6.30545 6.64849 6.86591 7.04135 7.08692 7.63731 7.65040 8.09940 8.73429 9.06169 9.52580 11.05894 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.003803 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.990307 B = 7361.635697 C = 7766.338859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.053 4.053 4 C 0.492 3.508 5 O -0.516 6.516 6 O -0.506 6.506 7 C -0.109 4.109 8 C 0.027 3.973 9 N -0.488 5.488 10 C 0.050 3.950 11 C 0.065 3.935 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.045 3.955 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.403 0.597 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.041 0.959 37 H -0.004 1.004 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 11.491 -15.846 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.144 4.144 3 C -0.055 4.055 4 C 0.335 3.665 5 O -0.404 6.404 6 O -0.318 6.318 7 C -0.146 4.146 8 C -0.101 4.101 9 N -0.212 5.212 10 C -0.078 4.078 11 C -0.013 4.013 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.083 4.083 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.262 0.738 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.014 0.986 38 H 0.017 0.983 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.435 10.602 -15.359 21.887 hybrid contribution 0.197 2.030 -0.029 2.040 sum -11.238 12.633 -15.388 22.862 Atomic orbital electron populations 1.22042 0.94861 1.01846 1.03215 1.21583 0.96641 0.92120 1.04053 1.21329 0.96800 0.96830 0.90503 1.23447 0.79841 0.76254 0.87002 1.90702 1.55735 1.46796 1.47202 1.84669 1.26610 1.72159 1.48341 1.22443 0.97890 1.00173 0.94140 1.23231 0.91390 0.94030 1.01408 1.65440 1.02078 1.42119 1.11590 1.22313 0.90730 0.97913 0.96841 1.22271 0.98525 0.87558 0.92980 1.88012 1.91735 1.22476 1.26081 1.20584 0.93349 0.98514 0.78317 1.20903 1.48013 0.90605 0.95700 0.89886 1.24767 0.94968 0.95422 0.97855 1.69882 1.49479 1.16143 1.18046 0.86863 0.78758 0.82543 0.81633 1.19992 1.20854 1.19183 1.23159 0.91292 1.03147 0.90682 0.92202 0.91081 0.92572 0.91613 0.88731 0.73838 0.88884 0.90943 0.89052 0.94042 0.93841 0.89632 0.94513 0.94090 0.98636 0.98257 0.92450 0.92190 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.20 37.16 0.34 -1.10 16 2 C -0.11 -1.10 4.76 -26.73 -0.13 -1.22 16 3 C -0.05 -0.58 0.72 -154.27 -0.11 -0.69 16 4 C 0.49 5.23 6.68 36.01 0.24 5.47 16 5 O -0.52 -6.96 16.21 -18.74 -0.30 -7.27 16 6 O -0.51 -3.79 10.46 -39.25 -0.41 -4.20 16 7 C -0.11 -1.14 5.72 -25.35 -0.15 -1.29 16 8 C 0.03 0.34 5.74 -2.18 -0.01 0.33 16 9 N -0.49 -7.16 5.32 -229.96 -1.22 -8.38 16 10 C 0.05 0.74 5.19 -3.82 -0.02 0.72 16 11 C 0.06 1.14 6.08 37.16 0.23 1.37 16 12 O -0.36 -8.59 10.27 -35.23 -0.36 -8.95 16 13 C 0.17 4.32 4.76 36.01 0.17 4.49 16 14 C -0.51 -15.47 9.99 -34.44 -0.34 -15.81 16 15 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 18 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 22 C 0.05 0.58 5.36 -2.18 -0.01 0.56 16 23 H 0.06 0.52 6.60 -51.93 -0.34 0.18 16 24 H 0.07 0.60 5.46 -51.93 -0.28 0.31 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.40 1.37 9.10 45.56 0.41 1.78 16 29 H 0.09 0.96 6.50 -51.93 -0.34 0.62 16 30 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 31 H 0.09 1.22 7.64 -51.93 -0.40 0.82 16 32 H 0.04 0.47 7.82 -51.93 -0.41 0.07 16 33 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 34 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.04 0.61 7.05 -51.93 -0.37 0.25 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 38 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.06 0.79 6.79 -51.93 -0.35 0.44 16 41 H 0.09 1.18 7.86 -51.93 -0.41 0.77 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -34.41 326.35 -6.92 -41.33 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.76 Total: -2.08 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.45 Total: -35.50 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.08 Total: -20.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.41 -6.92 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.424 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds