Wall clock time and date at job start Mon Mar 30 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.50703 * 110.28364 * 299.31954 * 3 2 1 5 5 O 1.20817 * 120.00287 * 240.67034 * 4 3 2 6 6 O 1.34229 * 119.99635 * 60.67681 * 4 3 2 7 7 C 1.54259 * 110.32511 * 61.44868 * 3 2 1 8 8 C 1.54378 * 105.05930 * 118.99957 * 7 3 2 9 9 N 1.48567 * 104.59365 * 336.14765 * 8 7 3 10 10 C 1.46900 * 110.99719 * 159.03942 * 9 8 7 11 11 C 1.52999 * 109.47234 * 69.87540 * 10 9 8 12 12 O 1.42898 * 109.47177 * 64.99900 * 11 10 9 13 13 C 1.42906 * 113.99821 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46699 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.71972 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99430 * 18 16 14 20 20 H 1.48494 * 109.47031 * 209.99977 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99678 * 18 16 14 22 22 C 1.48559 * 104.22364 * 39.48581 * 9 8 7 23 23 H 1.08992 * 109.47659 * 300.00089 * 1 2 3 24 24 H 1.08996 * 109.47025 * 60.00823 * 1 2 3 25 25 H 1.09008 * 109.46794 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47624 * 239.99368 * 2 1 3 27 27 H 1.09005 * 109.47412 * 119.99646 * 2 1 3 28 28 H 0.96700 * 116.99868 * 179.97438 * 6 4 3 29 29 H 1.08993 * 110.32287 * 0.10744 * 7 3 2 30 30 H 1.08990 * 110.40924 * 237.93910 * 7 3 2 31 31 H 1.09005 * 110.41367 * 217.37115 * 8 7 3 32 32 H 1.08997 * 110.41162 * 94.92227 * 8 7 3 33 33 H 1.09004 * 109.47620 * 309.87290 * 10 9 8 34 34 H 1.09000 * 109.47446 * 189.87116 * 10 9 8 35 35 H 1.09002 * 109.47235 * 304.99497 * 11 10 9 36 36 H 1.09000 * 109.47628 * 184.99900 * 11 10 9 37 37 H 1.09000 * 109.47490 * 59.99859 * 13 12 11 38 38 H 1.09001 * 109.47232 * 299.99213 * 13 12 11 39 39 H 0.97005 * 119.99656 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.41547 * 79.29045 * 22 9 8 41 41 H 1.09000 * 110.41149 * 201.73961 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5615 2.1658 -1.2325 5 8 2.3617 2.6149 -2.0183 6 8 0.2461 2.3112 -1.4571 7 6 1.5667 2.1782 1.2706 8 6 2.8625 2.5867 2.0037 9 7 3.8863 1.6261 1.5177 10 6 5.2418 2.1566 1.7154 11 6 5.5670 2.1809 3.2102 12 8 5.6080 0.8430 3.7105 13 6 5.9052 0.7529 5.1054 14 6 5.9221 -0.6950 5.5229 15 1 5.7211 -1.4688 4.7968 16 6 6.1890 -1.0315 6.8331 17 7 6.2032 -2.2951 7.1975 18 14 6.5289 0.3071 8.0908 19 1 5.2524 0.7309 8.7201 20 1 7.4459 -0.2161 9.1350 21 1 7.1588 1.4709 7.4168 22 6 3.5819 1.4685 0.0721 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 -0.0125 2.7827 -2.2608 29 1 0.9727 1.5111 1.8952 30 1 0.9875 3.0623 1.0045 31 1 2.7349 2.4929 3.0822 32 1 3.1428 3.6065 1.7403 33 1 5.2979 3.1689 1.3149 34 1 5.9600 1.5208 1.1976 35 1 4.7985 2.7436 3.7402 36 1 6.5359 2.6560 3.3637 37 1 5.1434 1.2859 5.6744 38 1 6.8811 1.1985 5.2985 39 1 6.3906 -2.5319 8.1194 40 1 3.9747 2.3134 -0.4934 41 1 3.9958 0.5328 -0.3037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385321779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:14 Heat of formation + Delta-G solvation = -161.124987 kcal Electronic energy + Delta-G solvation = -21524.611618 eV Core-core repulsion = 18210.464983 eV Total energy + Delta-G solvation = -3314.146635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99214 -39.81590 -38.44061 -37.19745 -35.70763 -34.76669 -32.16390 -30.45207 -29.86689 -28.53830 -24.86488 -24.08622 -23.92937 -23.58930 -21.78768 -20.59369 -19.03484 -18.91684 -17.77943 -17.42815 -17.12704 -16.81116 -16.31880 -16.05922 -15.70226 -15.27547 -15.11451 -14.70239 -14.48917 -14.32514 -14.16999 -13.67720 -13.53455 -13.02451 -13.00835 -12.79151 -12.71312 -12.58667 -12.46479 -12.15426 -12.06223 -11.87388 -11.78233 -11.68550 -11.57600 -11.29938 -11.24426 -10.89657 -10.28055 -9.39590 -8.34620 -6.41973 1.12636 1.34272 1.37651 1.48466 1.96589 2.31367 2.97858 3.01255 3.16606 3.26190 3.52054 3.73976 4.13346 4.17283 4.24540 4.28024 4.32517 4.44109 4.50005 4.53749 4.59598 4.62881 4.65861 4.73401 4.78734 4.90074 4.92566 5.00584 5.04627 5.09674 5.16553 5.33800 5.47340 5.54717 5.57256 5.84166 5.93239 6.06222 6.62485 6.82909 6.97059 7.22675 8.82774 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.003803 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.990307 B = 7361.635697 C = 7766.338859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.052 4.052 4 C 0.503 3.497 5 O -0.548 6.548 6 O -0.495 6.495 7 C -0.102 4.102 8 C 0.026 3.974 9 N -0.517 5.517 10 C 0.054 3.946 11 C 0.057 3.943 12 O -0.393 6.393 13 C 0.180 3.820 14 C -0.542 4.542 15 H 0.028 0.972 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.956 3.044 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.246 1.246 22 C 0.048 3.952 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.424 0.576 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.272 0.728 40 H 0.057 0.943 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 14.158 -15.640 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.054 4.054 4 C 0.347 3.653 5 O -0.438 6.438 6 O -0.308 6.308 7 C -0.140 4.140 8 C -0.102 4.102 9 N -0.241 5.241 10 C -0.074 4.074 11 C -0.020 4.020 12 O -0.312 6.312 13 C 0.104 3.896 14 C -0.580 4.580 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.583 5.583 18 Si 0.777 3.223 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.169 1.169 22 C -0.080 4.080 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.286 0.714 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.356 13.281 -15.188 23.659 hybrid contribution 0.416 1.122 -0.202 1.214 sum -11.941 14.403 -15.390 24.226 Atomic orbital electron populations 1.22008 0.93399 1.02337 1.03703 1.21536 0.97856 0.91681 1.03134 1.21253 0.95581 0.97313 0.91268 1.23175 0.80454 0.75474 0.86216 1.90701 1.56752 1.48220 1.48140 1.84599 1.24565 1.72040 1.49615 1.22424 0.97140 1.00869 0.93574 1.23261 0.91716 0.94348 1.00875 1.65374 1.02480 1.43437 1.12857 1.22260 0.90861 0.99383 0.94869 1.22608 0.99896 0.84897 0.94584 1.87967 1.91898 1.26501 1.24842 1.20285 0.94055 0.95460 0.79836 1.21167 1.49199 0.92109 0.95522 0.95336 1.25844 0.93969 0.98475 1.00246 1.70043 1.50157 1.18983 1.19138 0.85601 0.79456 0.79126 0.78093 1.18344 1.19889 1.16940 1.23080 0.92800 1.02524 0.89566 0.91966 0.90229 0.92178 0.91476 0.90785 0.71352 0.88821 0.89015 0.90243 0.92637 0.90903 0.90569 0.93267 0.92497 0.97407 0.97288 0.91858 0.92438 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.20 71.98 0.66 -1.89 16 2 C -0.10 -2.11 4.76 30.59 0.15 -1.96 16 3 C -0.05 -1.09 0.72 -52.03 -0.04 -1.13 16 4 C 0.50 9.77 6.68 71.24 0.48 10.25 16 5 O -0.55 -14.01 16.21 21.99 0.36 -13.66 16 6 O -0.49 -5.99 10.46 -51.40 -0.54 -6.53 16 7 C -0.10 -1.98 5.72 31.49 0.18 -1.80 16 8 C 0.03 0.61 5.74 86.45 0.50 1.10 16 9 N -0.52 -14.97 5.32 -881.46 -4.69 -19.66 16 10 C 0.05 1.55 5.19 86.30 0.45 2.00 16 11 C 0.06 1.94 6.08 71.98 0.44 2.38 16 12 O -0.39 -18.64 10.27 -148.98 -1.53 -20.17 16 13 C 0.18 9.16 4.76 71.24 0.34 9.49 16 14 C -0.54 -33.64 9.99 25.60 0.26 -33.38 16 15 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 16 C 0.01 0.74 5.47 84.66 0.46 1.20 16 17 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 18 Si 0.96 43.69 27.47 68.60 1.88 45.58 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 22 C 0.05 1.22 5.36 86.45 0.46 1.68 16 23 H 0.06 0.98 6.60 -2.39 -0.02 0.96 16 24 H 0.08 1.15 5.46 -2.39 -0.01 1.13 16 25 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.42 1.54 9.10 -74.06 -0.67 0.87 16 29 H 0.09 1.81 6.50 -2.39 -0.02 1.79 16 30 H 0.09 1.42 7.69 -2.39 -0.02 1.41 16 31 H 0.08 2.05 7.64 -2.38 -0.02 2.03 16 32 H 0.06 1.14 7.82 -2.39 -0.02 1.13 16 33 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 34 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.05 1.54 7.05 -2.39 -0.02 1.53 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 38 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 39 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 40 H 0.06 1.48 6.79 -2.39 -0.02 1.46 16 41 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 Total: -1.00 -76.19 326.35 0.41 -75.79 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.29 Total: 10.48 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.33 Total: -12.06 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -4.39 Total: -79.43 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.71 Total: -40.36 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -76.19 0.41 -75.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.340 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds