Wall clock time and date at job start Mon Mar 30 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50696 * 110.29037 * 60.67277 * 3 2 1 5 5 O 1.20828 * 120.00291 * 120.70050 * 4 3 2 6 6 O 1.34236 * 119.99647 * 300.70342 * 4 3 2 7 7 C 1.54261 * 110.32118 * 298.54188 * 3 2 1 8 8 C 1.54374 * 105.06127 * 241.10334 * 7 3 2 9 9 N 1.48560 * 104.59647 * 23.85799 * 8 7 3 10 10 C 1.46904 * 111.00079 * 200.95962 * 9 8 7 11 11 C 1.53001 * 109.46834 * 290.12104 * 10 9 8 12 12 O 1.42897 * 109.46954 * 65.00431 * 11 10 9 13 13 C 1.42903 * 113.99897 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47123 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99901 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47226 * 90.00136 * 18 16 14 20 20 H 1.48498 * 109.47227 * 209.99722 * 18 16 14 21 21 H 1.48493 * 109.47554 * 330.00058 * 18 16 14 22 22 C 1.48560 * 104.21821 * 320.51513 * 9 8 7 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96698 * 116.99728 * 179.97438 * 6 4 3 29 29 H 1.09003 * 110.32346 * 0.02562 * 7 3 2 30 30 H 1.09004 * 110.31972 * 122.20953 * 7 3 2 31 31 H 1.09000 * 110.41250 * 142.63250 * 8 7 3 32 32 H 1.08997 * 110.41345 * 264.95670 * 8 7 3 33 33 H 1.08995 * 109.47045 * 50.12061 * 10 9 8 34 34 H 1.08998 * 109.46948 * 170.12239 * 10 9 8 35 35 H 1.09002 * 109.46482 * 184.99620 * 11 10 9 36 36 H 1.08993 * 109.47456 * 305.00019 * 11 10 9 37 37 H 1.09002 * 109.46816 * 299.99479 * 13 12 11 38 38 H 1.08996 * 109.47332 * 59.99909 * 13 12 11 39 39 H 0.97001 * 120.00067 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.41037 * 280.70324 * 22 9 8 41 41 H 1.09007 * 110.41151 * 158.26465 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5615 2.1660 1.2323 5 8 2.3617 2.6368 2.0055 6 8 0.2461 2.2874 1.4710 7 6 1.5669 2.1780 -1.2708 8 6 2.8627 2.5842 -2.0051 9 7 3.8854 1.6224 -1.5193 10 6 5.2416 2.1507 -1.7184 11 6 5.5656 2.1735 -3.2136 12 8 4.6991 3.0976 -3.8747 13 6 4.9201 3.1961 -5.2831 14 6 3.9564 4.1924 -5.8744 15 1 3.2459 4.6995 -5.2383 16 6 3.9818 4.4568 -7.2274 17 7 4.8466 3.8390 -8.0019 18 14 2.7868 5.6912 -7.9603 19 1 3.3969 7.0449 -7.9367 20 1 2.4803 5.3109 -9.3627 21 1 1.5332 5.6994 -7.1644 22 6 3.5818 1.4661 -0.0735 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 -0.0126 2.7594 2.2743 29 1 0.9710 1.5115 -1.8943 30 1 0.9901 3.0634 -1.0031 31 1 2.7341 2.4899 -3.0833 32 1 3.1436 3.6045 -1.7443 33 1 5.2994 3.1631 -1.3187 34 1 5.9592 1.5141 -1.2008 35 1 6.6016 2.4812 -3.3561 36 1 5.4216 1.1774 -3.6318 37 1 5.9426 3.5251 -5.4682 38 1 4.7629 2.2212 -5.7446 39 1 4.8647 4.0252 -8.9537 40 1 3.9765 2.3108 0.4912 41 1 3.9948 0.5300 0.3027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:18 Heat of formation + Delta-G solvation = -142.187663 kcal Electronic energy + Delta-G solvation = -21728.424612 eV Core-core repulsion = 18415.099161 eV Total energy + Delta-G solvation = -3313.325451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02392 -38.68579 -36.69088 -36.33067 -34.46215 -32.69596 -30.95693 -28.92998 -28.10872 -26.65411 -23.83619 -23.14585 -22.49575 -21.91594 -20.61645 -19.67174 -18.06147 -16.71819 -16.40830 -16.22007 -15.63460 -15.52764 -14.71857 -14.50308 -14.23581 -14.10927 -13.83806 -13.48358 -13.24826 -13.11161 -12.61766 -12.16330 -11.97754 -11.88146 -11.59524 -11.37229 -11.24076 -11.18551 -11.01170 -10.87059 -10.78137 -10.72339 -10.57403 -10.43715 -10.28827 -9.95497 -9.09190 -8.80009 -8.26933 -8.13613 -6.10804 -4.12504 2.04846 2.80872 3.29704 3.35047 3.39657 4.23590 4.30899 4.35379 4.52657 4.69401 4.94266 5.11663 5.16996 5.25884 5.28065 5.39039 5.44810 5.54867 5.65778 5.71694 5.74288 5.83392 5.87248 5.94160 6.05711 6.09903 6.14754 6.26965 6.29547 6.32109 6.39207 6.65062 7.05466 7.13412 7.22889 7.45393 7.72913 7.78862 8.15988 8.58663 9.00782 9.52449 11.00726 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.004205 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.341856 B = 6656.395945 C = 7204.506489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.054 4.054 4 C 0.492 3.508 5 O -0.517 6.517 6 O -0.506 6.506 7 C -0.113 4.113 8 C 0.042 3.958 9 N -0.502 5.502 10 C 0.050 3.950 11 C 0.066 3.934 12 O -0.394 6.394 13 C 0.195 3.805 14 C -0.513 4.513 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.043 3.957 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 -7.010 17.498 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.140 4.140 3 C -0.056 4.056 4 C 0.335 3.665 5 O -0.405 6.405 6 O -0.318 6.318 7 C -0.151 4.151 8 C -0.086 4.086 9 N -0.226 5.226 10 C -0.079 4.079 11 C -0.012 4.012 12 O -0.314 6.314 13 C 0.121 3.879 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.733 3.267 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.085 4.085 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.723 -7.501 16.954 19.721 hybrid contribution -0.306 1.620 0.351 1.686 sum -7.029 -5.881 17.304 19.582 Atomic orbital electron populations 1.22064 0.94846 1.01623 1.03594 1.21540 0.96726 0.92402 1.03373 1.21340 0.96797 0.96585 0.90884 1.23450 0.79838 0.76465 0.86771 1.90699 1.55741 1.46149 1.47923 1.84672 1.26640 1.72055 1.48386 1.22559 0.98875 1.00005 0.93648 1.23233 0.88930 0.93915 1.02474 1.65465 1.02823 1.43327 1.11004 1.22308 0.90465 0.98454 0.96628 1.22222 0.93527 0.94068 0.91337 1.87853 1.57928 1.61494 1.24107 1.20169 0.96282 0.96374 0.75056 1.21037 1.18206 1.23257 0.92630 0.91672 1.24936 0.96147 0.96630 0.96725 1.69962 1.35985 1.42424 1.05355 0.86371 0.81103 0.80999 0.78215 1.20543 1.21095 1.19645 1.23139 0.91416 1.02624 0.91321 0.92812 0.92024 0.90861 0.91892 0.89284 0.73897 0.89278 0.91082 0.87060 0.93481 0.93980 0.90172 0.94140 0.93508 0.97949 0.97660 0.92681 0.92123 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.20 37.16 0.34 -1.12 16 2 C -0.10 -1.01 4.76 -26.73 -0.13 -1.14 16 3 C -0.05 -0.64 0.72 -154.28 -0.11 -0.75 16 4 C 0.49 5.79 6.70 36.00 0.24 6.03 16 5 O -0.52 -7.54 16.21 -18.75 -0.30 -7.85 16 6 O -0.51 -4.36 10.42 -39.27 -0.41 -4.77 16 7 C -0.11 -1.45 5.74 -25.35 -0.15 -1.59 16 8 C 0.04 0.68 5.11 -2.19 -0.01 0.67 16 9 N -0.50 -7.58 5.37 -229.97 -1.24 -8.81 16 10 C 0.05 0.76 5.38 -3.82 -0.02 0.74 16 11 C 0.07 1.23 6.24 37.16 0.23 1.46 16 12 O -0.39 -9.10 7.56 -35.23 -0.27 -9.37 16 13 C 0.20 5.27 5.69 36.01 0.20 5.48 16 14 C -0.51 -14.81 9.43 -34.44 -0.32 -15.13 16 15 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 C 0.04 0.56 5.37 -2.18 -0.01 0.55 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 25 H 0.07 0.64 5.41 -51.93 -0.28 0.36 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.40 1.82 9.10 45.56 0.41 2.24 16 29 H 0.09 1.08 6.50 -51.93 -0.34 0.74 16 30 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 31 H 0.11 2.13 6.80 -51.93 -0.35 1.78 16 32 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 33 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 41 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -32.31 327.20 -7.20 -39.51 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.80 Total: -0.98 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 0.17 Total: -3.28 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.50 Total: -34.82 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.98 Total: -21.99 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.31 -7.20 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.673 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds