Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50696 * 110.29037 * 60.67277 * 3 2 1 5 5 O 1.20828 * 120.00291 * 120.70050 * 4 3 2 6 6 O 1.34236 * 119.99647 * 300.70342 * 4 3 2 7 7 C 1.54261 * 110.32118 * 298.54188 * 3 2 1 8 8 C 1.54374 * 105.06127 * 241.10334 * 7 3 2 9 9 N 1.48560 * 104.59647 * 23.85799 * 8 7 3 10 10 C 1.46904 * 111.00079 * 200.95962 * 9 8 7 11 11 C 1.53001 * 109.46834 * 290.12104 * 10 9 8 12 12 O 1.42897 * 109.46954 * 65.00431 * 11 10 9 13 13 C 1.42903 * 113.99897 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47123 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99901 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47226 * 90.00136 * 18 16 14 20 20 H 1.48498 * 109.47227 * 209.99722 * 18 16 14 21 21 H 1.48493 * 109.47554 * 330.00058 * 18 16 14 22 22 C 1.48560 * 104.21821 * 320.51513 * 9 8 7 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96698 * 116.99728 * 179.97438 * 6 4 3 29 29 H 1.09003 * 110.32346 * 0.02562 * 7 3 2 30 30 H 1.09004 * 110.31972 * 122.20953 * 7 3 2 31 31 H 1.09000 * 110.41250 * 142.63250 * 8 7 3 32 32 H 1.08997 * 110.41345 * 264.95670 * 8 7 3 33 33 H 1.08995 * 109.47045 * 50.12061 * 10 9 8 34 34 H 1.08998 * 109.46948 * 170.12239 * 10 9 8 35 35 H 1.09002 * 109.46482 * 184.99620 * 11 10 9 36 36 H 1.08993 * 109.47456 * 305.00019 * 11 10 9 37 37 H 1.09002 * 109.46816 * 299.99479 * 13 12 11 38 38 H 1.08996 * 109.47332 * 59.99909 * 13 12 11 39 39 H 0.97001 * 120.00067 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.41037 * 280.70324 * 22 9 8 41 41 H 1.09007 * 110.41151 * 158.26465 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5615 2.1660 1.2323 5 8 2.3617 2.6368 2.0055 6 8 0.2461 2.2874 1.4710 7 6 1.5669 2.1780 -1.2708 8 6 2.8627 2.5842 -2.0051 9 7 3.8854 1.6224 -1.5193 10 6 5.2416 2.1507 -1.7184 11 6 5.5656 2.1735 -3.2136 12 8 4.6991 3.0976 -3.8747 13 6 4.9201 3.1961 -5.2831 14 6 3.9564 4.1924 -5.8744 15 1 3.2459 4.6995 -5.2383 16 6 3.9818 4.4568 -7.2274 17 7 4.8466 3.8390 -8.0019 18 14 2.7868 5.6912 -7.9603 19 1 3.3969 7.0449 -7.9367 20 1 2.4803 5.3109 -9.3627 21 1 1.5332 5.6994 -7.1644 22 6 3.5818 1.4661 -0.0735 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 -0.0126 2.7594 2.2743 29 1 0.9710 1.5115 -1.8943 30 1 0.9901 3.0634 -1.0031 31 1 2.7341 2.4899 -3.0833 32 1 3.1436 3.6045 -1.7443 33 1 5.2994 3.1631 -1.3187 34 1 5.9592 1.5141 -1.2008 35 1 6.6016 2.4812 -3.3561 36 1 5.4216 1.1774 -3.6318 37 1 5.9426 3.5251 -5.4682 38 1 4.7629 2.2212 -5.7446 39 1 4.8647 4.0252 -8.9537 40 1 3.9765 2.3108 0.4912 41 1 3.9948 0.5300 0.3027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385321780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = -165.477294 kcal Electronic energy + Delta-G solvation = -21729.434526 eV Core-core repulsion = 18415.099161 eV Total energy + Delta-G solvation = -3314.335365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97435 -39.82527 -38.36842 -37.19748 -35.64760 -34.78386 -32.13523 -30.18438 -29.53086 -28.42310 -24.88320 -24.53487 -23.95571 -23.33083 -21.89958 -20.57141 -18.93587 -18.61076 -17.75248 -17.48711 -17.22424 -16.76176 -16.38579 -15.85719 -15.54322 -15.22306 -15.14675 -14.73798 -14.50504 -14.27346 -13.89118 -13.75222 -13.05850 -13.01840 -12.97603 -12.81357 -12.71427 -12.53984 -12.43284 -12.35504 -12.14730 -11.91209 -11.73377 -11.64220 -11.54119 -11.25712 -11.21124 -10.83972 -10.16857 -9.51031 -8.30532 -6.42326 1.13409 1.40413 1.42747 1.54699 1.98475 2.35211 3.03686 3.07494 3.20464 3.32515 3.54552 3.77368 4.10752 4.22792 4.32880 4.33498 4.36711 4.46140 4.57088 4.61288 4.68401 4.69840 4.77679 4.84548 4.85459 4.94491 5.03335 5.08378 5.17880 5.21078 5.27505 5.37208 5.56174 5.56554 5.61404 5.82684 5.97659 5.99199 6.55692 6.84358 6.96954 7.29558 8.81884 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.004205 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.341856 B = 6656.395945 C = 7204.506489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 C -0.052 4.052 4 C 0.500 3.500 5 O -0.549 6.549 6 O -0.496 6.496 7 C -0.105 4.105 8 C 0.044 3.956 9 N -0.506 5.506 10 C 0.056 3.944 11 C 0.058 3.942 12 O -0.400 6.400 13 C 0.211 3.789 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.980 3.020 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.045 3.955 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.423 0.577 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.034 0.966 34 H 0.114 0.886 35 H 0.048 0.952 36 H 0.046 0.954 37 H -0.018 1.018 38 H -0.016 1.016 39 H 0.270 0.730 40 H 0.048 0.952 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 -7.263 18.569 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.136 4.136 3 C -0.054 4.054 4 C 0.344 3.656 5 O -0.439 6.439 6 O -0.309 6.309 7 C -0.143 4.143 8 C -0.084 4.084 9 N -0.231 5.231 10 C -0.072 4.072 11 C -0.019 4.019 12 O -0.320 6.320 13 C 0.136 3.864 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.803 3.197 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.082 4.082 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.285 0.715 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.000 1.000 38 H 0.002 0.998 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.173 -7.765 18.055 21.286 hybrid contribution 0.161 1.649 0.075 1.658 sum -8.012 -6.116 18.131 20.744 Atomic orbital electron populations 1.22042 0.93957 1.02432 1.03429 1.21535 0.97448 0.90835 1.03782 1.21308 0.95898 0.97822 0.90353 1.23309 0.80426 0.75712 0.86201 1.90698 1.56740 1.47492 1.49004 1.84614 1.24718 1.71932 1.49618 1.22472 0.97142 1.00571 0.94089 1.23042 0.91290 0.93281 1.00813 1.65431 1.02326 1.42568 1.12734 1.22296 0.91640 0.98997 0.94243 1.22516 0.93333 0.93000 0.93024 1.87851 1.59192 1.62868 1.22057 1.19771 0.94754 0.94828 0.77095 1.21351 1.18919 1.24216 0.93493 0.92020 1.25922 0.97867 0.98454 0.96880 1.70072 1.37407 1.43665 1.05931 0.85229 0.78691 0.78266 0.77526 1.19530 1.20015 1.18732 1.23167 0.92641 1.03024 0.89387 0.91585 0.92605 0.90549 0.90605 0.89732 0.71502 0.88439 0.90590 0.90569 0.95529 0.94721 0.86773 0.93335 0.93573 1.00046 0.99780 0.92133 0.93372 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.20 71.98 0.66 -1.79 16 2 C -0.10 -1.70 4.76 30.60 0.15 -1.56 16 3 C -0.05 -1.14 0.72 -52.03 -0.04 -1.17 16 4 C 0.50 10.82 6.70 71.23 0.48 11.29 16 5 O -0.55 -15.27 16.21 21.96 0.36 -14.91 16 6 O -0.50 -7.27 10.42 -51.47 -0.54 -7.80 16 7 C -0.10 -2.62 5.74 31.49 0.18 -2.44 16 8 C 0.04 1.45 5.11 86.45 0.44 1.89 16 9 N -0.51 -15.09 5.37 -881.50 -4.73 -19.82 16 10 C 0.06 1.71 5.38 86.30 0.46 2.17 16 11 C 0.06 2.20 6.24 71.98 0.45 2.64 16 12 O -0.40 -19.19 7.56 -148.98 -1.13 -20.32 16 13 C 0.21 11.83 5.69 71.24 0.41 12.24 16 14 C -0.54 -32.07 9.43 25.60 0.24 -31.83 16 15 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 18 Si 0.98 44.29 29.54 68.60 2.03 46.31 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.05 1.12 5.37 86.45 0.46 1.59 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.91 6.59 -2.39 -0.02 0.90 16 25 H 0.08 1.11 5.41 -2.38 -0.01 1.10 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.42 2.64 9.10 -74.06 -0.67 1.97 16 29 H 0.10 2.27 6.50 -2.39 -0.02 2.26 16 30 H 0.08 1.81 7.70 -2.39 -0.02 1.79 16 31 H 0.08 3.06 6.80 -2.39 -0.02 3.04 16 32 H 0.03 0.96 7.83 -2.39 -0.02 0.94 16 33 H 0.03 1.11 7.88 -2.39 -0.02 1.09 16 34 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H -0.02 -1.08 8.14 -2.39 -0.02 -1.09 16 38 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.05 1.34 6.78 -2.39 -0.02 1.32 16 41 H 0.11 2.20 7.86 -2.38 -0.02 2.18 16 Total: -1.00 -70.40 327.20 0.97 -69.43 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.35 Total: 9.06 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.36 Total: -6.09 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -4.45 Total: -75.68 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.31 Total: -43.03 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.40 0.97 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.049 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds