Wall clock time and date at job start Mon Mar 30 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48500 * 109.46897 * 239.99947 * 3 2 1 5 5 H 1.48495 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46817 * 120.00292 * 3 2 1 7 7 C 1.37872 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00359 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00168 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47344 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47063 * 65.00433 * 12 11 10 14 14 C 1.46891 * 110.99999 * 179.97438 * 13 12 11 15 15 C 1.53011 * 109.47191 * 179.97438 * 14 13 12 16 16 H 1.08998 * 110.01175 * 306.45991 * 15 14 13 17 17 C 1.54267 * 110.02746 * 67.89734 * 15 14 13 18 18 C 1.54895 * 104.19239 * 142.90057 * 17 15 14 19 19 C 1.54887 * 102.74455 * 322.05391 * 18 17 15 20 20 C 1.53874 * 110.03311 * 185.06428 * 15 14 13 21 21 H 1.09003 * 110.02830 * 121.43071 * 20 15 14 22 22 C 1.50702 * 110.03300 * 0.02562 * 20 15 14 23 23 O 1.20822 * 119.99993 * 273.42050 * 22 20 15 24 24 O 1.34223 * 119.99940 * 93.41582 * 22 20 15 25 25 H 0.97003 * 120.00399 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 299.99775 * 9 7 2 27 27 H 1.08994 * 109.47544 * 60.00398 * 9 7 2 28 28 H 1.09001 * 109.47679 * 300.00526 * 11 10 9 29 29 H 1.09006 * 109.47078 * 60.00288 * 11 10 9 30 30 H 1.09006 * 109.47035 * 185.00341 * 12 11 10 31 31 H 1.08998 * 109.47052 * 305.00308 * 12 11 10 32 32 H 1.00899 * 110.99788 * 56.04592 * 13 12 11 33 33 H 1.09001 * 109.47447 * 299.99642 * 14 13 12 34 34 H 1.08995 * 109.47571 * 59.99951 * 14 13 12 35 35 H 1.09002 * 110.48331 * 261.57343 * 17 15 14 36 36 H 1.08991 * 110.49208 * 24.21897 * 17 15 14 37 37 H 1.08996 * 110.75627 * 203.74145 * 18 17 15 38 38 H 1.09000 * 110.91832 * 80.44041 * 18 17 15 39 39 H 1.09006 * 110.48655 * 279.26357 * 19 18 17 40 40 H 1.08996 * 110.48881 * 156.62644 * 19 18 17 41 41 H 0.96703 * 117.00439 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4090 -5.8877 1.2541 14 6 4.4597 -6.9137 1.2892 15 6 5.2292 -6.8107 2.6077 16 1 5.5905 -5.7923 2.7501 17 6 4.3187 -7.2189 3.7841 18 6 5.2627 -7.9783 4.7493 19 6 6.1796 -8.7660 3.7810 20 6 6.4124 -7.7944 2.6056 21 1 7.3479 -7.2535 2.7480 22 6 6.4488 -8.5555 1.3054 23 8 5.8003 -9.5671 1.1792 24 8 7.2015 -8.1094 0.2875 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9451 -4.9823 0.8902 29 1 0.9446 -4.9827 -0.8898 30 1 2.1819 -6.9375 -0.0898 31 1 3.3210 -5.7957 -0.8429 32 1 2.7976 -5.9692 2.0526 33 1 4.0058 -7.9015 1.2092 34 1 5.1453 -6.7603 0.4559 35 1 3.9055 -6.3356 4.2710 36 1 3.5192 -7.8741 3.4383 37 1 4.6978 -8.6590 5.3861 38 1 5.8453 -7.2816 5.3521 39 1 5.6807 -9.6712 3.4346 40 1 7.1245 -9.0119 4.2655 41 1 7.1930 -8.6314 -0.5265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385326076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:34 Heat of formation + Delta-G solvation = -158.353711 kcal Electronic energy + Delta-G solvation = -20964.228078 eV Core-core repulsion = 17650.201615 eV Total energy + Delta-G solvation = -3314.026463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02236 -38.34640 -36.98807 -36.24358 -35.12001 -32.65786 -30.81300 -29.85642 -27.97481 -26.50689 -24.04437 -23.11121 -22.26209 -21.54927 -20.82768 -19.51866 -18.25619 -17.00257 -16.46232 -16.32710 -15.93375 -15.40699 -15.12084 -14.96830 -14.79227 -14.23757 -13.62490 -13.48024 -13.36498 -13.14219 -12.70543 -12.16330 -12.06661 -11.93203 -11.72837 -11.43457 -11.32022 -11.21405 -11.02911 -10.94482 -10.82444 -10.75395 -10.69613 -10.49289 -10.38103 -9.94413 -9.05124 -8.75631 -8.20733 -8.08731 -6.05740 -4.06756 1.97591 2.81001 3.36131 3.38210 3.42697 4.02652 4.16007 4.38046 4.39687 4.69101 4.89204 4.98437 5.08328 5.09459 5.16259 5.27543 5.30336 5.30621 5.35071 5.50194 5.57724 5.59738 5.70966 5.78537 5.79709 5.94526 6.00143 6.03805 6.11972 6.16529 6.29627 6.32269 7.13239 7.17897 7.48871 7.54882 7.68042 7.85872 8.22261 8.67099 9.07751 9.57919 11.05963 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.003286 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.426665 B = 8519.170220 C = 8644.827384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.066 3.934 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.052 3.948 15 C -0.077 4.077 16 H 0.101 0.899 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.083 4.083 21 H 0.107 0.893 22 C 0.489 3.511 23 O -0.517 6.517 24 O -0.515 6.515 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.340 0.660 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.841 -18.882 6.530 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.065 4.065 13 N -0.302 5.302 14 C -0.078 4.078 15 C -0.096 4.096 16 H 0.120 0.880 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.103 4.103 21 H 0.125 0.875 22 C 0.332 3.668 23 O -0.406 6.406 24 O -0.327 6.327 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.124 -18.269 6.614 22.902 hybrid contribution -0.516 -0.302 -0.553 0.815 sum 11.608 -18.571 6.061 22.723 Atomic orbital electron populations 1.69959 1.06112 1.27160 1.50835 1.24947 0.94959 0.99399 0.95253 0.86395 0.79292 0.81932 0.78850 1.20043 1.21239 1.19998 1.21036 0.94081 0.89365 1.50451 0.91541 1.20180 0.88862 0.83919 0.95115 1.87955 1.34656 1.12334 1.95023 1.22219 0.93804 0.86321 0.98907 1.21988 0.95768 0.95680 0.93015 1.60322 1.16240 1.49204 1.04462 1.22300 0.95068 0.93372 0.97023 1.21787 0.93209 0.99216 0.95398 0.88040 1.22486 0.97691 1.00522 0.95297 1.22468 0.97379 0.98817 0.97203 1.22468 1.00692 0.98347 0.93924 1.21792 1.02248 0.97081 0.89166 0.87516 1.23385 0.74791 0.82875 0.85750 1.90696 1.41615 1.25588 1.82676 1.84601 1.65111 1.57201 1.25748 0.92691 0.97894 0.98020 0.94764 0.94167 0.94926 0.90447 0.84198 0.94976 0.90923 0.90306 0.91469 0.91022 0.90927 0.89685 0.90898 0.73319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.40 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.45 5.69 36.00 0.20 5.65 16 10 O -0.38 -9.47 10.27 -35.23 -0.36 -9.83 16 11 C 0.07 1.25 6.22 37.16 0.23 1.48 16 12 C 0.06 1.01 6.07 -3.82 -0.02 0.99 16 13 N -0.67 -10.09 6.45 -113.78 -0.73 -10.83 16 14 C 0.05 0.65 3.86 -3.82 -0.01 0.64 16 15 C -0.08 -0.81 3.15 -89.50 -0.28 -1.09 16 16 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.12 -1.13 5.56 -25.07 -0.14 -1.27 16 18 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 19 C -0.12 -0.94 6.31 -25.08 -0.16 -1.09 16 20 C -0.08 -0.75 3.40 -90.66 -0.31 -1.06 16 21 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 22 C 0.49 5.13 5.14 36.01 0.19 5.32 16 23 O -0.52 -6.72 15.79 -18.75 -0.30 -7.02 16 24 O -0.51 -4.56 12.95 -39.24 -0.51 -5.06 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.34 4.76 7.97 -39.29 -0.31 4.45 16 33 H 0.03 0.42 7.12 -51.93 -0.37 0.05 16 34 H 0.07 0.97 6.87 -51.93 -0.36 0.61 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.65 7.76 -51.93 -0.40 0.25 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.81 6.89 -51.93 -0.36 0.45 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.41 2.01 9.10 45.56 0.41 2.42 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -34.42 336.35 -8.02 -42.44 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.00 Total: 0.43 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.90 Total: -5.71 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.00 Total: -37.47 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.17 Total: -21.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.42 -8.02 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.918 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds