Wall clock time and date at job start Mon Mar 30 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48500 * 109.46897 * 239.99947 * 3 2 1 5 5 H 1.48495 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46817 * 120.00292 * 3 2 1 7 7 C 1.37872 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00359 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47099 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00168 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47344 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47063 * 65.00433 * 12 11 10 14 14 C 1.46891 * 110.99999 * 179.97438 * 13 12 11 15 15 C 1.53011 * 109.47191 * 179.97438 * 14 13 12 16 16 H 1.08998 * 110.01175 * 306.45991 * 15 14 13 17 17 C 1.54267 * 110.02746 * 67.89734 * 15 14 13 18 18 C 1.54895 * 104.19239 * 142.90057 * 17 15 14 19 19 C 1.54887 * 102.74455 * 322.05391 * 18 17 15 20 20 C 1.53874 * 110.03311 * 185.06428 * 15 14 13 21 21 H 1.09003 * 110.02830 * 121.43071 * 20 15 14 22 22 C 1.50702 * 110.03300 * 0.02562 * 20 15 14 23 23 O 1.20822 * 119.99993 * 273.42050 * 22 20 15 24 24 O 1.34223 * 119.99940 * 93.41582 * 22 20 15 25 25 H 0.97003 * 120.00399 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46866 * 299.99775 * 9 7 2 27 27 H 1.08994 * 109.47544 * 60.00398 * 9 7 2 28 28 H 1.09001 * 109.47679 * 300.00526 * 11 10 9 29 29 H 1.09006 * 109.47078 * 60.00288 * 11 10 9 30 30 H 1.09006 * 109.47035 * 185.00341 * 12 11 10 31 31 H 1.08998 * 109.47052 * 305.00308 * 12 11 10 32 32 H 1.00899 * 110.99788 * 56.04592 * 13 12 11 33 33 H 1.09001 * 109.47447 * 299.99642 * 14 13 12 34 34 H 1.08995 * 109.47571 * 59.99951 * 14 13 12 35 35 H 1.09002 * 110.48331 * 261.57343 * 17 15 14 36 36 H 1.08991 * 110.49208 * 24.21897 * 17 15 14 37 37 H 1.08996 * 110.75627 * 203.74145 * 18 17 15 38 38 H 1.09000 * 110.91832 * 80.44041 * 18 17 15 39 39 H 1.09006 * 110.48655 * 279.26357 * 19 18 17 40 40 H 1.08996 * 110.48881 * 156.62644 * 19 18 17 41 41 H 0.96703 * 117.00439 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4090 -5.8877 1.2541 14 6 4.4597 -6.9137 1.2892 15 6 5.2292 -6.8107 2.6077 16 1 5.5905 -5.7923 2.7501 17 6 4.3187 -7.2189 3.7841 18 6 5.2627 -7.9783 4.7493 19 6 6.1796 -8.7660 3.7810 20 6 6.4124 -7.7944 2.6056 21 1 7.3479 -7.2535 2.7480 22 6 6.4488 -8.5555 1.3054 23 8 5.8003 -9.5671 1.1792 24 8 7.2015 -8.1094 0.2875 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 0.9451 -4.9823 0.8902 29 1 0.9446 -4.9827 -0.8898 30 1 2.1819 -6.9375 -0.0898 31 1 3.3210 -5.7957 -0.8429 32 1 2.7976 -5.9692 2.0526 33 1 4.0058 -7.9015 1.2092 34 1 5.1453 -6.7603 0.4559 35 1 3.9055 -6.3356 4.2710 36 1 3.5192 -7.8741 3.4383 37 1 4.6978 -8.6590 5.3861 38 1 5.8453 -7.2816 5.3521 39 1 5.6807 -9.6712 3.4346 40 1 7.1245 -9.0119 4.2655 41 1 7.1930 -8.6314 -0.5265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385326076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:34 Heat of formation + Delta-G solvation = -183.481791 kcal Electronic energy + Delta-G solvation = -20965.317714 eV Core-core repulsion = 17650.201615 eV Total energy + Delta-G solvation = -3315.116099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82449 -39.25038 -38.60896 -37.10066 -36.40770 -34.84717 -31.93587 -30.63746 -29.59472 -28.20153 -25.02737 -24.45139 -23.92567 -22.94415 -21.54890 -20.29718 -19.06916 -18.62080 -17.86519 -17.53830 -17.30960 -16.66093 -16.56616 -16.17199 -16.00556 -15.53907 -15.07744 -14.97647 -14.33699 -14.12697 -14.04387 -13.59585 -13.39489 -13.05228 -12.80037 -12.77631 -12.65531 -12.58644 -12.32860 -12.14756 -11.99216 -11.88821 -11.75298 -11.58414 -11.51957 -11.30850 -11.26036 -10.84754 -10.19380 -9.36892 -8.30251 -6.42451 1.16505 1.41255 1.46407 1.54761 2.13091 2.36769 3.02029 3.03435 3.21624 3.44968 3.60109 3.89362 4.06240 4.19516 4.26252 4.31137 4.40097 4.45686 4.49887 4.50322 4.54545 4.61742 4.65515 4.77757 4.82959 4.88471 4.94937 5.02359 5.19144 5.19740 5.22601 5.29217 5.44646 5.56896 5.61210 5.97349 6.00800 6.40071 6.58026 6.86541 6.97770 7.29741 8.81998 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024291 B = 0.003286 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.426665 B = 8519.170220 C = 8644.827384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.396 6.396 11 C 0.057 3.943 12 C 0.073 3.927 13 N -0.688 5.688 14 C 0.060 3.940 15 C -0.076 4.076 16 H 0.095 0.905 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.083 4.083 21 H 0.125 0.875 22 C 0.490 3.510 23 O -0.547 6.547 24 O -0.516 6.516 25 H 0.271 0.729 26 H -0.015 1.015 27 H -0.017 1.017 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.344 0.656 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 -18.645 7.230 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.315 6.315 11 C -0.021 4.021 12 C -0.056 4.056 13 N -0.320 5.320 14 C -0.069 4.069 15 C -0.095 4.095 16 H 0.113 0.887 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.102 4.102 21 H 0.143 0.857 22 C 0.334 3.666 23 O -0.438 6.438 24 O -0.329 6.329 25 H 0.079 0.921 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 13.502 -18.059 7.302 23.702 hybrid contribution -0.971 -0.458 -0.816 1.348 sum 12.531 -18.517 6.486 23.281 Atomic orbital electron populations 1.70066 1.07781 1.28689 1.50612 1.25965 0.95958 1.03386 0.93894 0.85230 0.78092 0.76655 0.79413 1.19045 1.19943 1.18936 1.21364 0.94082 0.90899 1.52160 0.92115 1.19809 0.88682 0.84970 0.93239 1.87908 1.34722 1.13831 1.95080 1.22555 0.95323 0.84545 0.99644 1.21878 0.94901 0.95507 0.93282 1.60303 1.16824 1.50597 1.04324 1.22252 0.94279 0.92322 0.98088 1.21760 0.93739 0.99363 0.94606 0.88692 1.22477 0.97714 1.00555 0.95304 1.22465 0.97005 0.98892 0.96855 1.22454 1.01625 0.97374 0.93591 1.21881 1.02374 0.97033 0.88956 0.85682 1.23654 0.74199 0.82415 0.86307 1.90686 1.42880 1.26928 1.83265 1.84571 1.64490 1.57436 1.26391 0.92058 0.99760 0.99905 0.94024 0.93362 0.92070 0.91118 0.83681 0.95338 0.91772 0.90482 0.92199 0.90137 0.89646 0.91319 0.88877 0.71484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -33.44 9.43 25.60 0.24 -33.20 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 12.04 5.69 71.24 0.41 12.44 16 10 O -0.40 -20.04 10.27 -148.98 -1.53 -21.57 16 11 C 0.06 2.16 6.22 71.98 0.45 2.61 16 12 C 0.07 2.26 6.07 86.30 0.52 2.78 16 13 N -0.69 -20.43 6.45 -513.88 -3.31 -23.75 16 14 C 0.06 1.47 3.86 86.31 0.33 1.80 16 15 C -0.08 -1.51 3.15 -10.07 -0.03 -1.54 16 16 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 17 C -0.12 -2.14 5.56 31.67 0.18 -1.97 16 18 C -0.11 -1.50 6.91 31.89 0.22 -1.28 16 19 C -0.11 -1.60 6.31 31.67 0.20 -1.40 16 20 C -0.08 -1.37 3.40 -10.82 -0.04 -1.41 16 21 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 22 C 0.49 9.80 5.14 71.24 0.37 10.17 16 23 O -0.55 -13.94 15.79 21.97 0.35 -13.60 16 24 O -0.52 -8.50 12.95 -51.35 -0.66 -9.17 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.34 9.54 7.97 -89.69 -0.71 8.82 16 33 H 0.03 0.73 7.12 -2.39 -0.02 0.71 16 34 H 0.06 1.68 6.87 -2.39 -0.02 1.66 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.12 7.76 -2.39 -0.02 1.11 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.23 6.89 -2.38 -0.02 1.22 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.42 3.71 9.10 -74.06 -0.67 3.04 16 Total: -1.00 -73.58 336.35 0.09 -73.49 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.36 Total: 14.33 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.31 Total: -10.16 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.03 Total: -80.31 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.85 Total: -44.34 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.58 0.09 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.994 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds