Wall clock time and date at job start Mon Mar 30 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48492 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46823 * 300.00109 * 3 2 1 6 6 H 1.48503 * 109.46882 * 60.00107 * 3 2 1 7 7 C 1.37878 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00309 * 0.02562 * 7 2 1 10 10 O 1.42892 * 109.47426 * 180.02562 * 9 7 2 11 11 C 1.42906 * 114.00376 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47497 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47034 * 64.31320 * 12 11 10 14 14 C 1.48558 * 110.99800 * 175.73509 * 13 12 11 15 15 C 1.54371 * 104.59494 * 200.96099 * 14 13 12 16 16 C 1.54258 * 105.06095 * 23.85279 * 15 14 13 17 17 H 1.08999 * 110.33051 * 241.10114 * 16 15 14 18 18 C 1.53006 * 110.32145 * 118.99570 * 16 15 14 19 19 C 1.53001 * 109.47299 * 67.83364 * 18 16 15 20 20 C 1.50697 * 109.47266 * 179.97438 * 19 18 16 21 21 O 1.20818 * 119.99824 * 0.02562 * 20 19 18 22 22 O 1.34224 * 119.99939 * 179.97438 * 20 19 18 23 23 C 1.48559 * 110.99702 * 60.32068 * 13 12 11 24 24 H 0.96994 * 119.99652 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47349 * 59.99408 * 9 7 2 26 26 H 1.09008 * 109.47022 * 299.99957 * 9 7 2 27 27 H 1.09000 * 109.46460 * 59.99953 * 11 10 9 28 28 H 1.08996 * 109.46939 * 300.00220 * 11 10 9 29 29 H 1.09004 * 109.47033 * 304.31812 * 12 11 10 30 30 H 1.08993 * 109.47348 * 184.31785 * 12 11 10 31 31 H 1.09007 * 110.40831 * 82.18536 * 14 13 12 32 32 H 1.09001 * 110.51154 * 319.79633 * 14 13 12 33 33 H 1.09002 * 110.32640 * 264.96236 * 15 14 13 34 34 H 1.09003 * 110.32933 * 142.75257 * 15 14 13 35 35 H 1.09007 * 109.47248 * 187.83083 * 18 16 15 36 36 H 1.08996 * 109.47293 * 307.83121 * 18 16 15 37 37 H 1.08997 * 109.46665 * 299.99966 * 19 18 16 38 38 H 1.08996 * 109.47146 * 59.99668 * 19 18 16 39 39 H 0.96702 * 117.00635 * 180.02562 * 22 20 19 40 40 H 1.09001 * 110.41279 * 40.25769 * 23 13 12 41 41 H 1.08994 * 110.41162 * 277.81680 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8755 -0.0019 12 6 2.6479 -5.9563 -0.0023 13 7 3.4186 -5.8777 1.2459 14 6 4.4140 -6.9775 1.3271 15 6 4.7380 -7.0987 2.8316 16 6 3.5068 -6.5151 3.5550 17 1 3.7938 -5.6503 4.1532 18 6 2.8563 -7.5801 4.4402 19 6 3.7937 -7.9213 5.6002 20 6 3.1527 -8.9699 6.4724 21 8 2.0586 -9.4004 6.1944 22 8 3.7978 -9.4262 7.5574 23 6 2.5425 -6.0905 2.4267 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 0.9453 -4.9823 -0.8922 28 1 0.9445 -4.9826 0.8877 29 1 3.3144 -5.8026 -0.8510 30 1 2.1813 -6.9382 -0.0800 31 1 5.3115 -6.7202 0.7645 32 1 3.9862 -7.9081 0.9542 33 1 5.6293 -6.5202 3.0747 34 1 4.8778 -8.1443 3.1059 35 1 1.9142 -7.1990 4.8344 36 1 2.6670 -8.4768 3.8502 37 1 4.7358 -8.3024 5.2060 38 1 3.9830 -7.0246 6.1902 39 1 3.3467 -10.0988 8.0859 40 1 1.8199 -6.8816 2.2263 41 1 2.0308 -5.1654 2.6920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385330886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:52 Heat of formation + Delta-G solvation = -149.944306 kcal Electronic energy + Delta-G solvation = -20661.176703 eV Core-core repulsion = 17347.514899 eV Total energy + Delta-G solvation = -3313.661804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60062 -39.20598 -36.71321 -36.42660 -34.55818 -32.68784 -31.31921 -29.07068 -28.04516 -26.52805 -24.82237 -22.37614 -22.16296 -21.59366 -20.28188 -19.83951 -18.37690 -16.87619 -16.66554 -16.34049 -16.07706 -15.49272 -15.44822 -14.56109 -14.13598 -14.10735 -13.98942 -13.58352 -13.35303 -13.04068 -12.49364 -12.45262 -11.97837 -11.90507 -11.72434 -11.70707 -11.51325 -11.05730 -11.00066 -10.79098 -10.75795 -10.74379 -10.61219 -10.52453 -10.34917 -9.92233 -9.02082 -8.75477 -8.21107 -8.07918 -6.05843 -4.06553 1.89078 2.71591 3.32684 3.38921 3.46237 4.12619 4.37639 4.40413 4.56136 4.72429 4.75864 4.86508 4.98937 5.05477 5.27006 5.30687 5.31763 5.41742 5.47765 5.55161 5.62215 5.74632 5.77326 5.81285 5.86118 6.00087 6.04685 6.12162 6.15213 6.23133 6.27828 6.36701 7.05077 7.15462 7.25871 7.49141 7.55900 7.86571 8.22563 8.67438 9.08763 9.58206 11.05956 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.003136 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.262719 B = 8926.840767 C = 9384.381901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.050 3.950 13 N -0.493 5.493 14 C 0.029 3.971 15 C -0.121 4.121 16 C -0.092 4.092 17 H 0.085 0.915 18 C -0.102 4.102 19 C -0.114 4.114 20 C 0.477 3.523 21 O -0.516 6.516 22 O -0.520 6.520 23 C 0.037 3.963 24 H 0.262 0.738 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.409 0.591 40 H 0.041 0.959 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -19.473 10.732 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.078 4.078 13 N -0.217 5.217 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.111 4.111 17 H 0.104 0.896 18 C -0.139 4.139 19 C -0.151 4.151 20 C 0.319 3.681 21 O -0.404 6.404 22 O -0.333 6.333 23 C -0.091 4.091 24 H 0.072 0.928 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.267 0.733 40 H 0.059 0.941 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.351 -18.598 10.395 22.884 hybrid contribution -0.800 -0.415 0.286 0.946 sum 7.550 -19.013 10.680 23.077 Atomic orbital electron populations 1.69981 1.06102 1.26923 1.51029 1.24959 0.94965 0.99427 0.95314 0.86292 0.80093 0.82657 0.77538 1.19438 1.20925 1.20903 1.21109 0.94135 0.89321 1.50119 0.91448 1.20181 0.88869 0.83960 0.95084 1.87954 1.34612 1.12298 1.95018 1.22251 0.93821 0.86302 0.98927 1.22313 0.96112 0.96107 0.93250 1.65417 1.12978 1.41659 1.01617 1.23125 0.97236 0.92894 0.96616 1.22418 0.98326 1.00419 0.94714 1.21922 0.95264 0.97805 0.96148 0.89633 1.21534 0.98210 0.99365 0.94833 1.21462 1.00960 0.96792 0.95925 1.23707 0.83703 0.81504 0.79158 1.90739 1.21320 1.57357 1.70986 1.84552 1.52619 1.57307 1.38774 1.23165 0.94782 1.00745 0.90376 0.92814 0.98026 0.97968 0.94338 0.94620 0.89962 0.94302 0.90234 0.94402 0.90796 0.91547 0.90619 0.91048 0.87468 0.87314 0.73263 0.94058 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 8 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 9 C 0.19 5.44 5.69 36.01 0.20 5.65 16 10 O -0.38 -9.44 10.26 -35.23 -0.36 -9.80 16 11 C 0.07 1.24 5.92 37.16 0.22 1.47 16 12 C 0.05 0.78 5.30 -3.82 -0.02 0.76 16 13 N -0.49 -7.53 5.38 -229.98 -1.24 -8.77 16 14 C 0.03 0.34 6.49 -2.19 -0.01 0.33 16 15 C -0.12 -1.15 6.15 -25.35 -0.16 -1.31 16 16 C -0.09 -0.96 3.07 -89.24 -0.27 -1.24 16 17 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.10 -0.92 3.68 -26.73 -0.10 -1.02 16 19 C -0.11 -0.81 5.65 -27.88 -0.16 -0.96 16 20 C 0.48 4.17 8.33 36.00 0.30 4.47 16 21 O -0.52 -6.33 16.74 -18.74 -0.31 -6.64 16 22 O -0.52 -3.40 13.42 -39.24 -0.53 -3.93 16 23 C 0.04 0.51 4.90 -2.18 -0.01 0.50 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 26 H 0.00 0.07 8.14 -51.92 -0.42 -0.35 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.67 6.73 -51.93 -0.35 0.32 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.51 7.98 -51.93 -0.41 0.10 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.41 7.91 -51.93 -0.41 0.00 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.50 6.94 -51.93 -0.36 0.14 16 35 H 0.08 0.76 8.10 -51.92 -0.42 0.34 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.11 0.60 7.03 -51.93 -0.36 0.23 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.41 1.07 9.10 45.56 0.41 1.49 16 40 H 0.04 0.53 7.69 -51.93 -0.40 0.13 16 41 H 0.09 1.39 7.57 -51.93 -0.39 1.00 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -35.17 338.43 -8.10 -43.27 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -6.05 Total: -4.24 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.43 Total: -5.50 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.50 Total: -35.43 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.20 Total: -20.37 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.17 -8.10 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385330886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.679 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds