Wall clock time and date at job start Mon Mar 30 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48492 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46823 * 300.00109 * 3 2 1 6 6 H 1.48503 * 109.46882 * 60.00107 * 3 2 1 7 7 C 1.37878 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00097 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00309 * 0.02562 * 7 2 1 10 10 O 1.42892 * 109.47426 * 180.02562 * 9 7 2 11 11 C 1.42906 * 114.00376 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47497 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47034 * 64.31320 * 12 11 10 14 14 C 1.48558 * 110.99800 * 175.73509 * 13 12 11 15 15 C 1.54371 * 104.59494 * 200.96099 * 14 13 12 16 16 C 1.54258 * 105.06095 * 23.85279 * 15 14 13 17 17 H 1.08999 * 110.33051 * 241.10114 * 16 15 14 18 18 C 1.53006 * 110.32145 * 118.99570 * 16 15 14 19 19 C 1.53001 * 109.47299 * 67.83364 * 18 16 15 20 20 C 1.50697 * 109.47266 * 179.97438 * 19 18 16 21 21 O 1.20818 * 119.99824 * 0.02562 * 20 19 18 22 22 O 1.34224 * 119.99939 * 179.97438 * 20 19 18 23 23 C 1.48559 * 110.99702 * 60.32068 * 13 12 11 24 24 H 0.96994 * 119.99652 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47349 * 59.99408 * 9 7 2 26 26 H 1.09008 * 109.47022 * 299.99957 * 9 7 2 27 27 H 1.09000 * 109.46460 * 59.99953 * 11 10 9 28 28 H 1.08996 * 109.46939 * 300.00220 * 11 10 9 29 29 H 1.09004 * 109.47033 * 304.31812 * 12 11 10 30 30 H 1.08993 * 109.47348 * 184.31785 * 12 11 10 31 31 H 1.09007 * 110.40831 * 82.18536 * 14 13 12 32 32 H 1.09001 * 110.51154 * 319.79633 * 14 13 12 33 33 H 1.09002 * 110.32640 * 264.96236 * 15 14 13 34 34 H 1.09003 * 110.32933 * 142.75257 * 15 14 13 35 35 H 1.09007 * 109.47248 * 187.83083 * 18 16 15 36 36 H 1.08996 * 109.47293 * 307.83121 * 18 16 15 37 37 H 1.08997 * 109.46665 * 299.99966 * 19 18 16 38 38 H 1.08996 * 109.47146 * 59.99668 * 19 18 16 39 39 H 0.96702 * 117.00635 * 180.02562 * 22 20 19 40 40 H 1.09001 * 110.41279 * 40.25769 * 23 13 12 41 41 H 1.08994 * 110.41162 * 277.81680 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8755 -0.0019 12 6 2.6479 -5.9563 -0.0023 13 7 3.4186 -5.8777 1.2459 14 6 4.4140 -6.9775 1.3271 15 6 4.7380 -7.0987 2.8316 16 6 3.5068 -6.5151 3.5550 17 1 3.7938 -5.6503 4.1532 18 6 2.8563 -7.5801 4.4402 19 6 3.7937 -7.9213 5.6002 20 6 3.1527 -8.9699 6.4724 21 8 2.0586 -9.4004 6.1944 22 8 3.7978 -9.4262 7.5574 23 6 2.5425 -6.0905 2.4267 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 0.9453 -4.9823 -0.8922 28 1 0.9445 -4.9826 0.8877 29 1 3.3144 -5.8026 -0.8510 30 1 2.1813 -6.9382 -0.0800 31 1 5.3115 -6.7202 0.7645 32 1 3.9862 -7.9081 0.9542 33 1 5.6293 -6.5202 3.0747 34 1 4.8778 -8.1443 3.1059 35 1 1.9142 -7.1990 4.8344 36 1 2.6670 -8.4768 3.8502 37 1 4.7358 -8.3024 5.2060 38 1 3.9830 -7.0246 6.1902 39 1 3.3467 -10.0988 8.0859 40 1 1.8199 -6.8816 2.2263 41 1 2.0308 -5.1654 2.6920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385330886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:51 Heat of formation + Delta-G solvation = -176.133342 kcal Electronic energy + Delta-G solvation = -20662.312345 eV Core-core repulsion = 17347.514899 eV Total energy + Delta-G solvation = -3314.797446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28198 -40.22498 -38.41454 -37.15311 -35.61622 -34.82640 -32.41780 -29.99973 -29.69030 -28.26344 -25.71450 -24.48702 -23.42478 -22.32111 -21.42723 -20.64586 -19.02547 -18.61495 -17.62271 -17.55791 -17.31208 -16.92363 -16.59426 -16.37048 -15.73692 -15.37647 -15.04026 -14.63411 -14.38549 -14.16781 -13.94952 -13.44791 -13.27885 -13.20415 -12.91783 -12.77102 -12.65337 -12.56669 -12.41775 -12.24534 -12.13868 -11.85977 -11.66386 -11.56825 -11.47606 -11.33082 -11.24215 -10.86077 -10.19868 -9.30224 -8.31719 -6.43815 1.24465 1.40174 1.42010 1.57172 2.18267 2.35795 3.01831 3.04762 3.25032 3.60315 3.75353 3.94989 4.00681 4.18017 4.23435 4.29753 4.35888 4.42920 4.49623 4.61354 4.67861 4.72553 4.74477 4.80373 4.82324 4.89441 4.97883 4.98747 5.09936 5.17811 5.22317 5.32508 5.44030 5.56096 5.66256 5.97142 6.01222 6.12998 6.56573 6.85492 7.02062 7.28447 8.81069 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.003136 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.262719 B = 8926.840767 C = 9384.381901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.056 3.944 12 C 0.059 3.941 13 N -0.525 5.525 14 C 0.028 3.972 15 C -0.113 4.113 16 C -0.084 4.084 17 H 0.082 0.918 18 C -0.093 4.093 19 C -0.110 4.110 20 C 0.482 3.518 21 O -0.559 6.559 22 O -0.515 6.515 23 C 0.035 3.965 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.019 1.019 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.425 0.575 40 H 0.047 0.953 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.065 -19.941 11.430 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.021 4.021 12 C -0.069 4.069 13 N -0.250 5.250 14 C -0.100 4.100 15 C -0.151 4.151 16 C -0.103 4.103 17 H 0.101 0.899 18 C -0.131 4.131 19 C -0.147 4.147 20 C 0.326 3.674 21 O -0.450 6.450 22 O -0.329 6.329 23 C -0.093 4.093 24 H 0.079 0.921 25 H 0.001 0.999 26 H -0.002 1.002 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.287 0.713 40 H 0.065 0.935 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.274 -19.103 11.114 24.372 hybrid contribution -1.434 -0.356 0.095 1.480 sum 8.840 -19.460 11.209 24.134 Atomic orbital electron populations 1.70085 1.07798 1.28565 1.50750 1.25999 0.95989 1.03478 0.93934 0.85109 0.78665 0.77158 0.78304 1.18793 1.19566 1.19590 1.21399 0.94030 0.90810 1.51904 0.92146 1.19794 0.88682 0.85086 0.93046 1.87906 1.34624 1.13772 1.95033 1.22591 0.95554 0.84774 0.99221 1.22215 0.95203 0.95738 0.93776 1.65349 1.13904 1.44163 1.01582 1.23217 0.96218 0.92193 0.98347 1.22426 0.97681 1.02133 0.92850 1.21832 0.95023 0.98207 0.95249 0.89931 1.21386 0.97954 0.98472 0.95313 1.21471 1.00987 0.97121 0.95147 1.23949 0.82980 0.81117 0.79306 1.90733 1.23186 1.58968 1.72151 1.84514 1.52409 1.57720 1.38220 1.23124 0.95515 0.99317 0.91326 0.92066 0.99920 1.00173 0.93619 0.94655 0.90140 0.91300 0.90135 0.93037 0.90146 0.88813 0.92295 0.91433 0.85050 0.85798 0.71307 0.93482 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 45.37 29.54 68.60 2.03 47.40 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.54 -33.54 9.43 25.60 0.24 -33.30 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.28 5.69 71.24 0.41 12.68 16 10 O -0.39 -20.29 10.26 -148.98 -1.53 -21.82 16 11 C 0.06 2.20 5.92 71.98 0.43 2.62 16 12 C 0.06 1.81 5.30 86.30 0.46 2.26 16 13 N -0.53 -15.81 5.38 -881.51 -4.75 -20.56 16 14 C 0.03 0.59 6.49 86.45 0.56 1.15 16 15 C -0.11 -1.85 6.15 31.49 0.19 -1.65 16 16 C -0.08 -1.66 3.07 -9.90 -0.03 -1.69 16 17 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 18 C -0.09 -1.58 3.68 30.60 0.11 -1.47 16 19 C -0.11 -1.29 5.65 29.85 0.17 -1.12 16 20 C 0.48 7.59 8.33 71.24 0.59 8.19 16 21 O -0.56 -13.36 16.74 21.99 0.37 -12.99 16 22 O -0.52 -5.55 13.42 -51.36 -0.69 -6.24 16 23 C 0.04 0.97 4.90 86.45 0.42 1.39 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.38 6.73 -2.39 -0.02 1.36 16 29 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.07 1.70 7.98 -2.39 -0.02 1.68 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.05 0.96 7.91 -2.39 -0.02 0.94 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.05 6.94 -2.39 -0.02 1.03 16 35 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.13 0.95 7.03 -2.39 -0.02 0.93 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.43 1.39 9.10 -74.06 -0.67 0.72 16 40 H 0.05 1.21 7.69 -2.39 -0.02 1.19 16 41 H 0.05 1.80 7.57 -2.39 -0.02 1.78 16 Total: -1.00 -77.24 338.43 0.07 -77.17 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.34 Total: 4.34 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.01 Total: -10.23 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -4.46 Total: -77.63 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.85 Total: -41.05 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.24 0.07 -77.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385330886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.962 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds