Wall clock time and date at job start Mon Mar 30 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.45032 * 2 1 4 4 O 1.20835 * 120.00277 * 226.35580 * 3 2 1 5 5 O 1.34228 * 120.00291 * 46.36357 * 3 2 1 6 6 C 1.53043 * 109.46301 * 240.03344 * 2 1 3 7 7 C 1.53122 * 109.27603 * 299.16086 * 6 2 1 8 8 C 1.53120 * 109.15787 * 302.34377 * 7 6 2 9 9 C 1.53038 * 109.27971 * 57.65679 * 8 7 6 10 10 N 1.46844 * 109.52440 * 300.81843 * 9 8 7 11 11 C 1.46900 * 111.00509 * 185.83677 * 10 9 8 12 12 C 1.52997 * 109.46980 * 65.73933 * 11 10 9 13 13 O 1.42899 * 109.47216 * 64.99878 * 12 11 10 14 14 C 1.42901 * 114.00462 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47468 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99521 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00040 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00241 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00176 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47511 * 89.99748 * 19 17 15 21 21 H 1.48506 * 109.47260 * 209.99895 * 19 17 15 22 22 H 1.48503 * 109.47317 * 329.99631 * 19 17 15 23 23 H 1.08996 * 109.47010 * 300.01976 * 1 2 3 24 24 H 1.08999 * 109.47669 * 60.02524 * 1 2 3 25 25 H 1.09004 * 109.46613 * 180.02562 * 1 2 3 26 26 H 0.96699 * 117.00543 * 179.97438 * 5 3 2 27 27 H 1.08997 * 109.50184 * 179.21891 * 6 2 1 28 28 H 1.09001 * 109.53471 * 59.11696 * 6 2 1 29 29 H 1.08996 * 109.52176 * 182.44094 * 7 6 2 30 30 H 1.09006 * 109.52528 * 62.24600 * 7 6 2 31 31 H 1.08998 * 109.50894 * 297.71231 * 8 7 6 32 32 H 1.09002 * 109.50014 * 177.58991 * 8 7 6 33 33 H 1.09000 * 109.46704 * 180.80372 * 9 8 7 34 34 H 1.09007 * 109.46508 * 60.83480 * 9 8 7 35 35 H 1.09005 * 109.47076 * 305.74282 * 11 10 9 36 36 H 1.09001 * 109.47394 * 185.73830 * 11 10 9 37 37 H 1.08997 * 109.47405 * 185.00037 * 12 11 10 38 38 H 1.08999 * 109.47279 * 305.00629 * 12 11 10 39 39 H 1.08999 * 109.47178 * 300.00737 * 14 13 12 40 40 H 1.09000 * 109.46659 * 60.00481 * 14 13 12 41 41 H 0.96993 * 120.00536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0318 1.4210 0.0000 4 8 2.9140 1.7502 -0.7572 5 8 1.4989 2.3210 0.8413 6 6 2.0399 -0.7208 -1.2501 7 6 1.5443 -2.1695 -1.2358 8 6 2.0271 -2.8531 0.0464 9 6 1.5176 -2.0705 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.6652 0.0505 2.4165 12 6 2.3953 -0.5580 3.6155 13 8 3.8038 -0.3760 3.4581 14 6 4.5825 -0.9109 4.5302 15 6 6.0447 -0.6646 4.2608 16 1 6.3488 -0.1506 3.3610 17 6 6.9940 -1.0955 5.1630 18 7 8.2700 -0.8802 4.9282 19 14 6.4680 -1.9853 6.7189 20 1 6.4115 -3.4462 6.4588 21 1 7.4483 -1.7126 7.8006 22 1 5.1259 -1.5043 7.1346 23 1 -0.3633 0.5141 0.8898 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.8537 3.2198 0.8049 27 1 3.1298 -0.7090 -1.2577 28 1 1.6642 -0.2164 -2.1404 29 1 1.9409 -2.6987 -2.1022 30 1 0.4548 -2.1821 -1.2673 31 1 3.1168 -2.8750 0.0592 32 1 1.6415 -3.8720 0.0829 33 1 1.8715 -2.5466 2.1734 34 1 0.4276 -2.0609 1.2531 35 1 0.5889 -0.0089 2.5781 36 1 1.9587 1.0942 2.3039 37 1 2.0653 -0.0654 4.5301 38 1 2.1711 -1.6230 3.6751 39 1 4.2978 -0.4253 5.4636 40 1 4.4037 -1.9833 4.6092 41 1 8.9379 -1.1836 5.5626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385336424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:50 Heat of formation + Delta-G solvation = -130.302709 kcal Electronic energy + Delta-G solvation = -22317.746326 eV Core-core repulsion = 19004.936245 eV Total energy + Delta-G solvation = -3312.810081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08245 -38.85606 -36.85784 -36.13802 -33.81113 -32.59059 -32.27996 -29.24849 -27.72475 -27.02857 -24.67555 -24.22426 -21.81397 -21.39625 -21.11051 -18.65911 -17.99973 -17.17687 -16.81523 -16.12781 -15.69826 -15.36937 -14.87773 -14.65991 -14.44530 -14.25048 -13.77012 -13.38626 -13.09817 -13.06139 -12.71506 -12.49825 -12.45994 -12.32857 -11.96322 -11.60634 -11.34967 -11.18197 -10.99063 -10.81464 -10.76889 -10.59287 -10.52492 -10.27750 -10.14668 -9.80806 -9.11194 -8.77905 -8.40290 -8.22066 -6.06200 -4.04576 2.16713 2.97368 3.26972 3.33711 3.35144 3.87227 4.39252 4.45734 4.62829 4.66035 4.87462 4.91142 5.04796 5.19365 5.24781 5.31956 5.36368 5.41191 5.49031 5.55495 5.66381 5.71310 5.76791 5.83935 5.90746 5.92694 5.97541 6.16196 6.18127 6.25917 6.40543 6.51266 6.64757 7.02065 7.05561 7.08968 7.65639 7.91252 8.10616 8.74245 9.07605 9.53376 11.07063 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.004956 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.256839 B = 5648.269297 C = 5931.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 C 0.497 3.503 4 O -0.501 6.501 5 O -0.515 6.515 6 C -0.099 4.099 7 C -0.118 4.118 8 C -0.121 4.121 9 C 0.053 3.947 10 N -0.505 5.505 11 C 0.044 3.956 12 C 0.062 3.938 13 O -0.365 6.365 14 C 0.168 3.832 15 C -0.514 4.514 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.408 0.592 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.000 1.000 40 H -0.004 1.004 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.157 -0.439 -9.539 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.035 3.965 3 C 0.338 3.662 4 O -0.386 6.386 5 O -0.327 6.327 6 C -0.137 4.137 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.074 4.074 10 N -0.231 5.231 11 C -0.083 4.083 12 C -0.016 4.016 13 O -0.283 6.283 14 C 0.093 3.907 15 C -0.552 4.552 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.267 0.733 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.262 -0.689 -9.852 21.646 hybrid contribution -0.848 0.049 1.248 1.510 sum -20.111 -0.640 -8.604 21.883 Atomic orbital electron populations 1.22549 0.94836 1.03538 1.03376 1.20901 0.93997 0.86940 0.94647 1.23132 0.78911 0.87823 0.76359 1.90712 1.28292 1.80326 1.39314 1.84575 1.64262 1.24733 1.59130 1.21530 1.03237 0.94966 0.93938 1.21624 1.00391 0.95100 0.98470 1.21633 1.02820 0.97995 0.93414 1.22231 0.96974 0.88149 1.00065 1.62060 1.59011 1.01920 1.00150 1.22520 0.96762 1.00055 0.88981 1.22363 0.85434 0.98303 0.95478 1.88025 1.13592 1.80308 1.46402 1.20575 0.92231 0.92116 0.85780 1.20901 0.87544 1.38082 1.08714 0.89950 1.24767 0.94685 0.95718 0.97837 1.69880 1.00009 1.46922 1.36707 0.86860 0.78853 0.80544 0.83508 1.19992 1.20849 1.19196 0.91036 0.91659 0.90492 0.73304 0.89416 0.91199 0.91223 0.92038 0.90209 0.91378 0.89569 0.94483 0.93530 0.88228 0.94010 0.94387 0.98277 0.98638 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 7.27 37.16 0.27 -1.49 16 2 C 0.13 1.60 0.65 -132.76 -0.09 1.52 16 3 C 0.50 7.14 6.58 36.00 0.24 7.38 16 4 O -0.50 -8.78 16.73 -18.76 -0.31 -9.09 16 5 O -0.51 -5.86 10.45 -39.25 -0.41 -6.27 16 6 C -0.10 -1.19 4.30 -26.65 -0.11 -1.31 16 7 C -0.12 -1.15 5.70 -26.61 -0.15 -1.31 16 8 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 9 C 0.05 0.65 5.00 -3.84 -0.02 0.63 16 10 N -0.51 -7.42 4.38 -220.34 -0.97 -8.39 16 11 C 0.04 0.65 4.39 -3.83 -0.02 0.63 16 12 C 0.06 1.10 6.00 37.16 0.22 1.32 16 13 O -0.36 -8.72 10.27 -35.23 -0.36 -9.08 16 14 C 0.17 4.38 4.76 36.01 0.17 4.55 16 15 C -0.51 -15.71 9.99 -34.44 -0.34 -16.06 16 16 H 0.08 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 H 0.07 0.68 6.53 -51.93 -0.34 0.35 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.66 4.80 -51.93 -0.25 0.41 16 26 H 0.41 3.10 9.10 45.56 0.41 3.52 16 27 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.15 6.12 -51.93 -0.32 0.84 16 34 H 0.04 0.38 6.19 -51.92 -0.32 0.06 16 35 H 0.05 0.56 6.95 -51.93 -0.36 0.20 16 36 H 0.10 1.56 5.05 -51.93 -0.26 1.30 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.63 6.22 -51.93 -0.32 0.30 16 39 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 40 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 41 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -35.40 315.65 -6.68 -42.08 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.40 Total: -0.02 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.09 Total: -3.60 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.19 Total: -35.83 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.09 Total: -24.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.40 -6.68 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385336424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.219 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds