Wall clock time and date at job start Mon Mar 30 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.45032 * 2 1 4 4 O 1.20835 * 120.00277 * 226.35580 * 3 2 1 5 5 O 1.34228 * 120.00291 * 46.36357 * 3 2 1 6 6 C 1.53043 * 109.46301 * 240.03344 * 2 1 3 7 7 C 1.53122 * 109.27603 * 299.16086 * 6 2 1 8 8 C 1.53120 * 109.15787 * 302.34377 * 7 6 2 9 9 C 1.53038 * 109.27971 * 57.65679 * 8 7 6 10 10 N 1.46844 * 109.52440 * 300.81843 * 9 8 7 11 11 C 1.46900 * 111.00509 * 185.83677 * 10 9 8 12 12 C 1.52997 * 109.46980 * 65.73933 * 11 10 9 13 13 O 1.42899 * 109.47216 * 64.99878 * 12 11 10 14 14 C 1.42901 * 114.00462 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47468 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99521 * 0.02562 * 15 14 13 17 17 C 1.37868 * 120.00040 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00241 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00176 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47511 * 89.99748 * 19 17 15 21 21 H 1.48506 * 109.47260 * 209.99895 * 19 17 15 22 22 H 1.48503 * 109.47317 * 329.99631 * 19 17 15 23 23 H 1.08996 * 109.47010 * 300.01976 * 1 2 3 24 24 H 1.08999 * 109.47669 * 60.02524 * 1 2 3 25 25 H 1.09004 * 109.46613 * 180.02562 * 1 2 3 26 26 H 0.96699 * 117.00543 * 179.97438 * 5 3 2 27 27 H 1.08997 * 109.50184 * 179.21891 * 6 2 1 28 28 H 1.09001 * 109.53471 * 59.11696 * 6 2 1 29 29 H 1.08996 * 109.52176 * 182.44094 * 7 6 2 30 30 H 1.09006 * 109.52528 * 62.24600 * 7 6 2 31 31 H 1.08998 * 109.50894 * 297.71231 * 8 7 6 32 32 H 1.09002 * 109.50014 * 177.58991 * 8 7 6 33 33 H 1.09000 * 109.46704 * 180.80372 * 9 8 7 34 34 H 1.09007 * 109.46508 * 60.83480 * 9 8 7 35 35 H 1.09005 * 109.47076 * 305.74282 * 11 10 9 36 36 H 1.09001 * 109.47394 * 185.73830 * 11 10 9 37 37 H 1.08997 * 109.47405 * 185.00037 * 12 11 10 38 38 H 1.08999 * 109.47279 * 305.00629 * 12 11 10 39 39 H 1.08999 * 109.47178 * 300.00737 * 14 13 12 40 40 H 1.09000 * 109.46659 * 60.00481 * 14 13 12 41 41 H 0.96993 * 120.00536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0318 1.4210 0.0000 4 8 2.9140 1.7502 -0.7572 5 8 1.4989 2.3210 0.8413 6 6 2.0399 -0.7208 -1.2501 7 6 1.5443 -2.1695 -1.2358 8 6 2.0271 -2.8531 0.0464 9 6 1.5176 -2.0705 1.2589 10 7 2.0194 -0.6918 1.1993 11 6 1.6652 0.0505 2.4165 12 6 2.3953 -0.5580 3.6155 13 8 3.8038 -0.3760 3.4581 14 6 4.5825 -0.9109 4.5302 15 6 6.0447 -0.6646 4.2608 16 1 6.3488 -0.1506 3.3610 17 6 6.9940 -1.0955 5.1630 18 7 8.2700 -0.8802 4.9282 19 14 6.4680 -1.9853 6.7189 20 1 6.4115 -3.4462 6.4588 21 1 7.4483 -1.7126 7.8006 22 1 5.1259 -1.5043 7.1346 23 1 -0.3633 0.5141 0.8898 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.8537 3.2198 0.8049 27 1 3.1298 -0.7090 -1.2577 28 1 1.6642 -0.2164 -2.1404 29 1 1.9409 -2.6987 -2.1022 30 1 0.4548 -2.1821 -1.2673 31 1 3.1168 -2.8750 0.0592 32 1 1.6415 -3.8720 0.0829 33 1 1.8715 -2.5466 2.1734 34 1 0.4276 -2.0609 1.2531 35 1 0.5889 -0.0089 2.5781 36 1 1.9587 1.0942 2.3039 37 1 2.0653 -0.0654 4.5301 38 1 2.1711 -1.6230 3.6751 39 1 4.2978 -0.4253 5.4636 40 1 4.4037 -1.9833 4.6092 41 1 8.9379 -1.1836 5.5626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385336424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:50 Heat of formation + Delta-G solvation = -158.081982 kcal Electronic energy + Delta-G solvation = -22318.950925 eV Core-core repulsion = 19004.936245 eV Total energy + Delta-G solvation = -3314.014680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11761 -39.92441 -38.50461 -37.26057 -35.14360 -34.53480 -33.29267 -30.81058 -29.24493 -28.17371 -25.68094 -25.26220 -23.96025 -22.48000 -22.20003 -19.59963 -19.09096 -19.02769 -18.23250 -17.47722 -17.14584 -16.62664 -16.36974 -15.97119 -15.78765 -15.42017 -14.85852 -14.75525 -14.50320 -14.19252 -14.10523 -13.73903 -13.67748 -13.27343 -13.11525 -12.96451 -12.81505 -12.59337 -12.45069 -12.11511 -12.01470 -11.85379 -11.74289 -11.44626 -11.39232 -11.28651 -11.12112 -10.91568 -10.27248 -9.20197 -8.37084 -6.45274 1.06103 1.32015 1.36254 1.47125 2.02949 2.29409 2.85727 2.95250 3.14167 3.55102 3.78060 3.96062 4.02629 4.14299 4.25720 4.32038 4.40421 4.45214 4.51214 4.55436 4.57636 4.65886 4.72772 4.81574 4.88928 4.97924 4.99346 5.05438 5.09543 5.13154 5.23085 5.32132 5.44861 5.50762 5.55691 5.93419 6.03994 6.12287 6.59326 6.82177 6.91465 7.19784 8.80711 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.004956 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.256839 B = 5648.269297 C = 5931.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.124 3.876 3 C 0.493 3.507 4 O -0.546 6.546 5 O -0.505 6.505 6 C -0.100 4.100 7 C -0.110 4.110 8 C -0.121 4.121 9 C 0.052 3.948 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.052 3.948 13 O -0.397 6.397 14 C 0.181 3.819 15 C -0.545 4.545 16 H 0.022 0.978 17 C 0.010 3.990 18 N -0.945 5.945 19 Si 0.960 3.040 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.244 1.244 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.422 0.578 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 -1.941 -8.207 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 C 0.335 3.665 4 O -0.435 6.435 5 O -0.318 6.318 6 C -0.138 4.138 7 C -0.147 4.147 8 C -0.159 4.159 9 C -0.075 4.075 10 N -0.267 5.267 11 C -0.077 4.077 12 C -0.025 4.025 13 O -0.316 6.316 14 C 0.105 3.895 15 C -0.582 4.582 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.585 5.585 19 Si 0.781 3.219 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.167 1.167 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.284 0.716 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.868 -2.170 -8.526 24.502 hybrid contribution 0.308 0.620 0.736 1.010 sum -22.560 -1.551 -7.790 23.917 Atomic orbital electron populations 1.22499 0.91596 1.04961 1.04258 1.21005 0.96321 0.85475 0.93876 1.23707 0.78121 0.88963 0.75660 1.90692 1.30274 1.81252 1.41267 1.84534 1.63685 1.25600 1.57971 1.21537 1.00764 0.97028 0.94478 1.21608 1.02001 0.93043 0.98026 1.21642 1.00676 0.99554 0.93999 1.22292 0.98734 0.86720 0.99716 1.61957 1.60898 1.03204 1.00651 1.22453 0.98227 0.98932 0.88113 1.22762 0.82061 0.99913 0.97773 1.87981 1.17129 1.80509 1.46002 1.20259 0.89722 0.92836 0.86641 1.21171 0.91095 1.38701 1.07282 0.95999 1.25906 0.94292 0.96219 1.02284 1.70052 1.01751 1.47997 1.38656 0.85545 0.79564 0.79347 0.77447 1.18295 1.19789 1.16703 0.90647 0.90330 0.88669 0.71591 0.93566 0.90068 0.90282 0.89106 0.93836 0.88848 0.91022 0.91278 0.89818 0.89712 0.92394 0.92858 0.97140 0.97355 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 7.27 71.98 0.52 -2.19 16 2 C 0.12 3.01 0.65 2.80 0.00 3.01 16 3 C 0.49 14.25 6.58 71.24 0.47 14.72 16 4 O -0.55 -20.07 16.73 21.94 0.37 -19.71 16 5 O -0.50 -11.12 10.45 -51.40 -0.54 -11.66 16 6 C -0.10 -2.39 4.30 30.65 0.13 -2.26 16 7 C -0.11 -1.90 5.70 30.68 0.17 -1.73 16 8 C -0.12 -2.53 6.09 30.65 0.19 -2.34 16 9 C 0.05 1.16 5.00 86.33 0.43 1.59 16 10 N -0.54 -15.35 4.38 -851.04 -3.73 -19.08 16 11 C 0.05 1.37 4.39 86.30 0.38 1.75 16 12 C 0.05 1.75 6.00 71.98 0.43 2.18 16 13 O -0.40 -19.25 10.27 -148.98 -1.53 -20.78 16 14 C 0.18 9.40 4.76 71.24 0.34 9.74 16 15 C -0.54 -34.64 9.99 25.60 0.26 -34.38 16 16 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 17 C 0.01 0.64 5.47 84.65 0.46 1.10 16 18 N -0.95 -61.34 13.96 21.44 0.30 -61.04 16 19 Si 0.96 44.23 27.47 68.60 1.88 46.12 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 23 H 0.07 1.14 6.53 -2.39 -0.02 1.12 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.14 4.80 -2.38 -0.01 1.13 16 26 H 0.42 6.32 9.10 -74.06 -0.67 5.65 16 27 H 0.05 1.46 7.93 -2.39 -0.02 1.45 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.09 6.56 -2.38 -0.02 1.08 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.80 6.12 -2.39 -0.01 1.78 16 34 H 0.07 1.10 6.19 -2.38 -0.01 1.09 16 35 H 0.08 1.69 6.95 -2.38 -0.02 1.67 16 36 H 0.08 2.59 5.05 -2.39 -0.01 2.57 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.63 6.22 -2.39 -0.01 1.62 16 39 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 40 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 41 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -81.96 315.65 0.85 -81.11 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.31 Total: 13.85 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.79 Total: -8.81 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.43 Total: -80.12 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -1.70 Total: -52.14 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -81.96 0.85 -81.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385336424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.973 kcal (2) G-P(sol) polarization free energy of solvation -81.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds