Wall clock time and date at job start Mon Mar 30 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46506 * 2 1 4 4 O 1.20824 * 120.00137 * 24.98124 * 3 2 1 5 5 O 1.34229 * 120.00130 * 204.97659 * 3 2 1 6 6 C 1.53036 * 109.46339 * 119.98147 * 2 1 3 7 7 C 1.53126 * 109.27755 * 60.81952 * 6 2 1 8 8 C 1.53122 * 109.15715 * 57.66101 * 7 6 2 9 9 C 1.53039 * 109.27789 * 302.34269 * 8 7 6 10 10 N 1.46841 * 109.52332 * 59.17994 * 9 8 7 11 11 C 1.46906 * 111.00277 * 174.15852 * 10 9 8 12 12 C 1.52994 * 109.46927 * 286.68977 * 11 10 9 13 13 O 1.42895 * 109.47754 * 67.58873 * 12 11 10 14 14 C 1.42897 * 114.00304 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47012 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99903 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47211 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47599 * 119.99879 * 19 17 15 22 22 H 1.48505 * 109.47036 * 239.99943 * 19 17 15 23 23 H 1.09003 * 109.46949 * 59.99971 * 1 2 3 24 24 H 1.09002 * 109.47259 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46915 * 300.00408 * 1 2 3 26 26 H 0.96698 * 117.00219 * 180.02562 * 5 3 2 27 27 H 1.08997 * 109.51064 * 180.76356 * 6 2 1 28 28 H 1.09006 * 109.50262 * 300.88580 * 6 2 1 29 29 H 1.09005 * 109.51901 * 177.56195 * 7 6 2 30 30 H 1.08993 * 109.52611 * 297.75402 * 7 6 2 31 31 H 1.08996 * 109.50425 * 62.28325 * 8 7 6 32 32 H 1.09000 * 109.50317 * 182.39951 * 8 7 6 33 33 H 1.09000 * 109.45957 * 179.19600 * 9 8 7 34 34 H 1.08999 * 109.46181 * 299.17562 * 9 8 7 35 35 H 1.09006 * 109.46404 * 46.68472 * 11 10 9 36 36 H 1.08993 * 109.47389 * 166.68105 * 11 10 9 37 37 H 1.09007 * 109.46625 * 187.58691 * 12 11 10 38 38 H 1.08998 * 109.47395 * 307.58425 * 12 11 10 39 39 H 1.09000 * 109.46866 * 299.99774 * 14 13 12 40 40 H 1.09001 * 109.47393 * 59.99913 * 14 13 12 41 41 H 0.97002 * 120.00109 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.3393 2.3065 0.4419 5 8 3.2493 1.7025 -0.4908 6 6 2.0399 -0.7210 1.2498 7 6 1.5439 -2.1697 1.2355 8 6 2.0264 -2.8533 -0.0469 9 6 1.5169 -2.0704 -1.2592 10 7 2.0191 -0.6918 -1.1995 11 6 1.6650 0.0507 -2.4166 12 6 2.5337 -0.4326 -3.5796 13 8 2.1854 -1.7792 -3.9070 14 6 2.9420 -2.3291 -4.9873 15 6 2.4943 -3.7448 -5.2447 16 1 1.7107 -4.1812 -4.6432 17 6 3.0859 -4.4834 -6.2475 18 7 4.0406 -3.9522 -6.9797 19 14 2.5305 -6.2380 -6.5671 20 1 1.4497 -6.5965 -5.6138 21 1 2.0221 -6.3509 -7.9577 22 1 3.6786 -7.1619 -6.3832 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.5280 2.6282 -0.4691 27 1 3.1298 -0.7097 1.2575 28 1 1.6639 -0.2165 2.1399 29 1 1.9406 -2.6991 2.1019 30 1 0.4545 -2.1821 1.2672 31 1 3.1160 -2.8754 -0.0597 32 1 1.6408 -3.8722 -0.0834 33 1 1.8707 -2.5465 -2.1737 34 1 0.4270 -2.0604 -1.2531 35 1 0.6145 -0.1189 -2.6529 36 1 1.8338 1.1152 -2.2548 37 1 2.3680 0.2067 -4.4469 38 1 3.5840 -0.3888 -3.2913 39 1 2.7844 -1.7291 -5.8836 40 1 4.0009 -2.3246 -4.7286 41 1 4.4570 -4.4720 -7.6849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385336425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:53 Heat of formation + Delta-G solvation = -139.139801 kcal Electronic energy + Delta-G solvation = -22305.086138 eV Core-core repulsion = 18991.892852 eV Total energy + Delta-G solvation = -3313.193286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06948 -38.84474 -36.74474 -36.16154 -33.77119 -32.65207 -31.99599 -29.11623 -27.45566 -26.71314 -24.72220 -23.81375 -22.26951 -21.48558 -20.84488 -18.82210 -18.03432 -17.11238 -16.44338 -16.00074 -15.56572 -15.31192 -14.92079 -14.54183 -14.34851 -14.06115 -13.83842 -13.27972 -13.19721 -12.96465 -12.65179 -12.22886 -12.12120 -11.95124 -11.75526 -11.51315 -11.25604 -11.18451 -11.05749 -10.91902 -10.77671 -10.73382 -10.38427 -10.26497 -10.17005 -9.81288 -9.07499 -8.78577 -8.18337 -8.09029 -6.11331 -4.13033 2.08078 2.95943 3.28289 3.35108 3.40533 3.82679 4.33694 4.54457 4.66477 4.90791 4.95895 5.12381 5.14785 5.22294 5.25526 5.34092 5.52366 5.60208 5.62968 5.63663 5.74315 5.84608 5.93431 5.97446 6.05619 6.06961 6.10828 6.18638 6.36281 6.40353 6.54450 6.78066 7.11126 7.23581 7.25516 7.45619 7.78336 7.87792 8.15437 8.56780 9.00374 9.51943 11.00186 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.004665 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.039177 B = 6001.244492 C = 6622.709286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 C 0.496 3.504 4 O -0.523 6.523 5 O -0.495 6.495 6 C -0.102 4.102 7 C -0.119 4.119 8 C -0.118 4.118 9 C 0.039 3.961 10 N -0.508 5.508 11 C 0.058 3.942 12 C 0.070 3.930 13 O -0.393 6.393 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.402 0.598 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 8.006 15.308 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 C 0.338 3.662 4 O -0.411 6.411 5 O -0.304 6.304 6 C -0.140 4.140 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.087 4.087 10 N -0.234 5.234 11 C -0.070 4.070 12 C -0.007 4.007 13 O -0.313 6.313 14 C 0.121 3.879 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.576 7.668 15.385 17.558 hybrid contribution -0.641 0.086 -0.512 0.824 sum -4.217 7.754 14.873 17.295 Atomic orbital electron populations 1.22414 0.93869 1.03524 1.03468 1.20952 0.93933 0.87242 0.95156 1.23388 0.78718 0.91600 0.72533 1.90701 1.57521 1.48634 1.44246 1.84737 1.34481 1.35509 1.75680 1.21581 1.02187 0.96148 0.94063 1.21629 1.00748 0.94455 0.98841 1.21630 1.02108 0.98542 0.93330 1.22652 0.97233 0.87108 1.01708 1.62214 1.58842 1.02781 0.99550 1.22220 0.98463 0.96544 0.89738 1.22193 0.98030 0.86229 0.94297 1.87739 1.63737 1.24943 1.54884 1.20190 0.90728 0.93568 0.83439 1.21074 1.20450 0.96805 1.16773 0.91588 1.24940 0.94960 0.98930 0.95631 1.69973 1.25227 1.37292 1.21195 0.86320 0.78596 0.83707 0.78088 1.19510 1.20925 1.20863 0.91998 0.90076 0.91020 0.74044 0.90110 0.91310 0.91485 0.91859 0.90874 0.91264 0.85332 0.94866 0.93766 0.91073 0.94172 0.93115 0.97884 0.97576 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 7.02 37.16 0.26 -1.81 16 2 C 0.12 1.50 0.65 -132.76 -0.09 1.42 16 3 C 0.50 6.45 5.56 36.00 0.20 6.65 16 4 O -0.52 -7.75 16.85 -18.75 -0.32 -8.06 16 5 O -0.49 -5.60 12.27 -39.26 -0.48 -6.08 16 6 C -0.10 -1.12 4.87 -26.65 -0.13 -1.25 16 7 C -0.12 -1.24 5.70 -26.60 -0.15 -1.39 16 8 C -0.12 -1.51 6.09 -26.65 -0.16 -1.68 16 9 C 0.04 0.60 4.88 -3.84 -0.02 0.58 16 10 N -0.51 -7.49 4.18 -220.35 -0.92 -8.41 16 11 C 0.06 0.89 4.44 -3.82 -0.02 0.88 16 12 C 0.07 1.29 6.23 37.15 0.23 1.53 16 13 O -0.39 -8.91 7.33 -35.23 -0.26 -9.17 16 14 C 0.19 5.19 5.69 36.01 0.20 5.40 16 15 C -0.51 -14.63 9.43 -34.44 -0.32 -14.95 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.77 6.96 -51.93 -0.36 0.41 16 24 H 0.08 0.91 4.80 -51.93 -0.25 0.66 16 25 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 26 H 0.40 2.68 9.10 45.56 0.41 3.09 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.13 2.47 5.12 -51.93 -0.27 2.20 16 34 H 0.03 0.49 6.19 -51.93 -0.32 0.17 16 35 H 0.04 0.69 7.28 -51.93 -0.38 0.31 16 36 H 0.07 1.00 5.86 -51.93 -0.30 0.70 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -31.82 319.93 -7.09 -38.91 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.56 Total: 0.50 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.09 Total: -3.13 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.18 Total: -34.23 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.06 Total: -23.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.82 -7.09 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385336425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.228 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds